Wall clock time and date at job start Mon Mar 30 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 120.00264 * 2 1 4 4 C 1.53004 * 109.46727 * 64.91172 * 3 2 1 5 5 H 1.09000 * 110.01754 * 304.09056 * 4 3 2 6 6 C 1.53873 * 110.03292 * 65.48338 * 4 3 2 7 7 C 1.54263 * 106.60035 * 119.28165 * 6 4 3 8 8 C 1.54891 * 104.19680 * 23.60632 * 7 6 4 9 9 C 1.54266 * 110.02769 * 182.64807 * 4 3 2 10 10 H 1.08998 * 110.48701 * 335.78273 * 9 4 3 11 11 O 1.42904 * 110.48677 * 98.42658 * 9 4 3 12 12 S 1.65605 * 120.00014 * 180.02562 * 2 1 3 13 13 O 1.42106 * 104.27513 * 333.92865 * 12 2 1 14 14 O 1.42093 * 104.27786 * 206.07166 * 12 2 1 15 15 C 1.81394 * 104.44755 * 89.99798 * 12 2 1 16 16 C 1.50705 * 109.47195 * 180.02562 * 15 12 2 17 17 H 1.08001 * 119.99238 * 359.97438 * 16 15 12 18 18 C 1.37872 * 120.00407 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99844 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00310 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47210 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47129 * 119.99691 * 20 18 16 23 23 H 1.48494 * 109.47421 * 239.99870 * 20 18 16 24 24 H 1.08998 * 109.46864 * 264.96491 * 1 2 3 25 25 H 1.09001 * 109.46962 * 24.96409 * 1 2 3 26 26 H 1.08994 * 109.47678 * 144.96488 * 1 2 3 27 27 H 1.09001 * 109.47084 * 184.90932 * 3 2 1 28 28 H 1.08997 * 109.46946 * 304.91612 * 3 2 1 29 29 H 1.09003 * 110.03093 * 238.56736 * 6 4 3 30 30 H 1.09001 * 110.03574 * 359.97438 * 6 4 3 31 31 H 1.09001 * 110.48945 * 142.28387 * 7 6 4 32 32 H 1.09004 * 110.48853 * 264.80025 * 7 6 4 33 33 H 1.09005 * 110.75569 * 80.37262 * 8 7 6 34 34 H 1.08995 * 110.75923 * 203.74026 * 8 7 6 35 35 H 0.96701 * 113.99822 * 179.97438 * 11 9 4 36 36 H 1.09001 * 109.47655 * 299.99907 * 15 12 2 37 37 H 1.08997 * 109.47155 * 60.00370 * 15 12 2 38 38 H 0.97003 * 120.00400 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 1.9228 2.0162 1.3065 5 1 0.8498 2.1544 1.4387 6 6 2.5036 1.2306 2.4953 7 6 3.5485 2.1489 3.1621 8 6 3.1148 3.5782 2.7522 9 6 2.6352 3.3845 1.2922 10 1 3.4857 3.3647 0.6108 11 8 1.7219 4.4201 0.9241 12 16 2.2930 -1.4342 -0.0006 13 8 1.3969 -2.3564 0.6042 14 8 3.5394 -1.1195 0.6047 15 6 2.5192 -1.8254 -1.7574 16 6 3.2693 -3.1257 -1.8900 17 1 3.5793 -3.6628 -1.0057 18 6 3.5608 -3.6292 -3.1399 19 7 3.1837 -2.9749 -4.2167 20 14 4.4911 -5.2406 -3.3042 21 1 4.7980 -5.7750 -1.9531 22 1 3.6570 -6.2204 -4.0457 23 1 5.7572 -5.0081 -4.0444 24 1 -0.3633 -0.0902 1.0237 25 1 -0.3633 0.9317 -0.4337 26 1 -0.3634 -0.8414 -0.5899 27 1 3.2660 1.0714 -0.0879 28 1 1.8699 1.8775 -0.8427 29 1 1.7124 0.9884 3.2049 30 1 2.9807 0.3167 2.1417 31 1 3.5184 2.0372 4.2459 32 1 4.5469 1.9280 2.7843 33 1 2.2987 3.9302 3.3833 34 1 3.9601 4.2651 2.7933 35 1 2.1169 5.3024 0.8995 36 1 1.5450 -1.9178 -2.2375 37 1 3.0865 -1.0278 -2.2371 38 1 3.3884 -3.3292 -5.0962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581261395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:36 Heat of formation + Delta-G solvation = -139.524816 kcal Electronic energy + Delta-G solvation = -20704.033162 eV Core-core repulsion = 17479.975427 eV Total energy + Delta-G solvation = -3224.057735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.14115 -36.23554 -36.04539 -34.96368 -34.65758 -33.35272 -29.95870 -29.01631 -27.59832 -26.35438 -23.73316 -23.22156 -20.92350 -19.54717 -18.34262 -17.53191 -17.19831 -16.36105 -15.84799 -15.61100 -15.10323 -14.80769 -14.28324 -14.15361 -13.71477 -13.65682 -12.97438 -12.66212 -12.49564 -12.29422 -12.10382 -11.97153 -11.73708 -11.44937 -11.26557 -11.05303 -11.01977 -10.94904 -10.87453 -10.70250 -10.61061 -10.47763 -10.25877 -9.95942 -9.80987 -9.35275 -8.73071 -8.43617 -6.34288 -4.45159 1.29412 3.18993 3.26003 3.33060 3.47813 4.10818 4.23220 4.54581 4.59336 4.81404 4.91204 4.97103 5.11428 5.15919 5.29980 5.38614 5.46058 5.53456 5.62129 5.66880 5.80211 5.82248 5.89173 5.98341 6.07735 6.13760 6.18608 6.32314 6.44234 6.55296 6.62003 6.79677 7.07094 7.43472 7.56289 7.74209 8.57426 9.22762 10.77500 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.004768 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.600516 B = 5870.753043 C = 5931.292143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.011 6.011 3 C 0.129 3.871 4 C -0.096 4.096 5 H 0.084 0.916 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.155 4.155 9 C 0.101 3.899 10 H 0.067 0.933 11 O -0.565 6.565 12 S 2.580 3.420 13 O -0.978 6.978 14 O -0.976 6.976 15 C -0.420 4.420 16 C -0.534 4.534 17 H 0.069 0.931 18 C 0.076 3.924 19 N -0.879 5.879 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.375 0.625 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 13.449 8.682 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.846 5.846 3 C 0.003 3.997 4 C -0.116 4.116 5 H 0.103 0.897 6 C -0.170 4.170 7 C -0.159 4.159 8 C -0.193 4.193 9 C 0.042 3.958 10 H 0.085 0.915 11 O -0.370 6.370 12 S 2.681 3.319 13 O -0.968 6.968 14 O -0.966 6.966 15 C -0.556 4.556 16 C -0.574 4.574 17 H 0.088 0.912 18 C -0.130 4.130 19 N -0.515 5.515 20 Si 0.730 3.270 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.221 0.779 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.194 12.491 9.272 15.710 hybrid contribution 0.666 -0.071 -0.835 1.070 sum -1.528 12.421 8.437 15.093 Atomic orbital electron populations 1.21282 0.79334 1.02445 1.01408 1.57703 1.14669 1.21483 1.90777 1.21362 0.97156 0.84724 0.96474 1.22036 1.01295 0.92204 0.96050 0.89729 1.22352 0.98373 0.99965 0.96349 1.22250 0.99551 0.93847 1.00270 1.23177 1.00935 0.97915 0.97275 1.22743 0.91266 0.87535 0.94261 0.91550 1.86527 1.39759 1.18694 1.92000 1.06069 0.73239 0.72041 0.80569 1.93472 1.64958 1.61949 1.76446 1.93438 1.44075 1.82811 1.76292 1.27766 1.06500 1.06245 1.15091 1.20376 1.38448 1.04466 0.94066 0.91247 1.24934 0.94949 0.97915 0.95230 1.69966 1.44708 1.38755 0.98056 0.86321 0.79475 0.82278 0.78920 1.18961 1.20305 1.20307 0.93203 0.91489 0.91413 0.89090 0.91340 0.91995 0.89109 0.91673 0.91066 0.90817 0.91587 0.77885 0.89864 0.89837 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 9.50 59.85 0.57 2.04 16 2 N -1.01 -17.08 2.89 -121.75 -0.35 -17.44 16 3 C 0.13 1.91 4.77 -4.04 -0.02 1.90 16 4 C -0.10 -1.28 2.71 -89.50 -0.24 -1.53 16 5 H 0.08 1.16 7.63 -51.93 -0.40 0.76 16 6 C -0.13 -1.89 6.26 -25.62 -0.16 -2.05 16 7 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 8 C -0.16 -1.54 6.62 -24.74 -0.16 -1.70 16 9 C 0.10 1.13 3.76 -25.07 -0.09 1.04 16 10 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 11 O -0.56 -6.03 13.37 -35.23 -0.47 -6.50 16 12 S 2.58 55.27 5.15 -107.50 -0.55 54.72 16 13 O -0.98 -23.29 17.19 -57.54 -0.99 -24.28 16 14 O -0.98 -22.14 14.56 -57.54 -0.84 -22.98 16 15 C -0.42 -10.23 5.93 36.01 0.21 -10.02 16 16 C -0.53 -14.83 9.13 -34.44 -0.31 -15.14 16 17 H 0.07 1.90 7.71 -52.49 -0.40 1.49 16 18 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 19 N -0.88 -24.90 13.29 55.43 0.74 -24.16 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.80 8.03 -51.93 -0.42 0.39 16 26 H 0.07 0.99 7.97 -51.93 -0.41 0.58 16 27 H 0.09 1.41 6.98 -51.93 -0.36 1.05 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.55 5.18 -51.93 -0.27 1.28 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.37 2.32 9.12 45.56 0.42 2.73 16 36 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -33.22 320.34 -8.34 -41.56 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.20 Total: 3.34 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -0.48 Total: -25.05 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.38 Total: -41.60 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -2.30 Total: -53.76 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.55 Total: 54.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.22 -8.34 -41.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581261395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.964 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds