Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47321 * 2 1 4 4 O 1.42899 * 109.47454 * 239.99726 * 2 1 3 5 5 C 1.53000 * 109.47137 * 119.99515 * 2 1 3 6 6 N 1.46497 * 109.47254 * 185.00302 * 5 2 1 7 7 C 1.46499 * 119.99866 * 275.27696 * 6 5 2 8 8 S 1.65596 * 120.00467 * 95.00013 * 6 5 2 9 9 O 1.42092 * 104.28257 * 206.07355 * 8 6 5 10 10 O 1.42097 * 104.27655 * 333.93185 * 8 6 5 11 11 C 1.81406 * 104.44924 * 89.99753 * 8 6 5 12 12 C 1.52998 * 109.47205 * 173.98422 * 11 8 6 13 13 C 1.50701 * 115.54701 * 65.20263 * 12 11 8 14 14 H 1.08003 * 120.00407 * 264.78757 * 13 12 11 15 15 C 1.37874 * 120.00046 * 84.78329 * 13 12 11 16 16 N 1.31519 * 119.99960 * 352.22630 * 15 13 12 17 17 Si 1.86805 * 120.00346 * 172.22467 * 15 13 12 18 18 H 1.48494 * 109.47053 * 59.99703 * 17 15 13 19 19 H 1.48500 * 109.47072 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46612 * 299.99991 * 17 15 13 21 21 C 1.52997 * 117.50100 * 279.53562 * 12 11 8 22 22 C 1.53000 * 117.50257 * 210.87391 * 12 11 8 23 23 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47047 * 300.00265 * 1 2 3 25 25 H 1.08997 * 109.47160 * 60.00265 * 1 2 3 26 26 H 0.96702 * 113.99284 * 59.99921 * 4 2 1 27 27 H 1.08998 * 109.46789 * 65.00136 * 5 2 1 28 28 H 1.09004 * 109.47216 * 305.00508 * 5 2 1 29 29 H 1.09002 * 109.47237 * 269.72708 * 7 6 5 30 30 H 1.09000 * 109.47455 * 29.72348 * 7 6 5 31 31 H 1.09001 * 109.47290 * 149.72404 * 7 6 5 32 32 H 1.08994 * 109.47256 * 293.98828 * 11 8 6 33 33 H 1.08999 * 109.46614 * 53.98756 * 11 8 6 34 34 H 0.96999 * 120.00188 * 185.02930 * 16 15 13 35 35 H 1.09004 * 117.50002 * 0.02562 * 21 12 11 36 36 H 1.09005 * 117.50201 * 145.02110 * 21 12 11 37 37 H 1.09000 * 117.49772 * 214.98441 * 22 12 11 38 38 H 1.09007 * 117.49382 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 7 3.5000 -0.6177 1.3111 7 6 4.3337 -1.5764 0.5816 8 16 4.2080 0.5869 2.1998 9 8 5.4709 0.7844 1.5792 10 8 3.2346 1.6218 2.2255 11 6 4.4161 -0.1322 3.8522 12 6 5.2022 0.8386 4.7356 13 6 4.5140 2.1447 5.0383 14 1 4.7193 3.0160 4.4341 15 6 3.6221 2.2272 6.0864 16 7 3.2552 1.1376 6.7251 17 14 2.9347 3.8867 6.5995 18 1 2.2043 4.4942 5.4583 19 1 2.0047 3.7051 7.7429 20 1 4.0494 4.7799 7.0057 21 6 6.7240 0.8615 4.5798 22 6 6.0913 0.2391 5.8269 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -0.2701 -1.9979 27 1 1.7516 -1.7714 1.2057 28 1 1.6053 -0.2616 2.1370 29 1 4.5535 -2.4292 1.2239 30 1 3.8023 -1.9180 -0.3066 31 1 5.2657 -1.0953 0.2848 32 1 3.4370 -0.3149 4.2949 33 1 4.9603 -1.0733 3.7729 34 1 2.5736 1.1852 7.4136 35 1 7.1653 0.1852 3.8475 36 1 7.2276 1.8212 4.6966 37 1 6.1787 0.7895 6.7636 38 1 6.1159 -0.8471 5.9157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589128687.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = -99.993084 kcal Electronic energy + Delta-G solvation = -21051.132201 eV Core-core repulsion = 17828.788691 eV Total energy + Delta-G solvation = -3222.343510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.96394 -36.73798 -36.26643 -35.25000 -34.91645 -32.04274 -31.26389 -28.14012 -27.26999 -25.48839 -24.45067 -21.36404 -21.19469 -19.53186 -18.23535 -17.51714 -16.67070 -16.44790 -15.86780 -15.25464 -14.72438 -14.63104 -14.37043 -13.83738 -13.54754 -13.25850 -13.06355 -12.60188 -12.41883 -11.99402 -11.93755 -11.86097 -11.80776 -11.24762 -11.19133 -11.03777 -10.99383 -10.91203 -10.78627 -10.59857 -10.44599 -10.10833 -9.91586 -9.69481 -8.96539 -8.72543 -8.56129 -8.04722 -6.13873 -4.24474 1.08036 3.31999 3.33776 3.38595 3.40382 4.25474 4.36917 4.62946 4.84554 4.97022 5.01420 5.13441 5.19017 5.22384 5.33601 5.57634 5.65804 5.75561 5.82076 5.88229 5.92469 5.98369 6.14383 6.20775 6.24678 6.33145 6.42279 6.62662 6.73106 6.91799 7.00690 7.25919 7.39761 7.66594 7.80234 8.20995 8.80726 9.46398 10.93830 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020068 B = 0.006947 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.921575 B = 4029.299905 C = 4862.163873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.066 0.934 4 O -0.564 6.564 5 C 0.135 3.865 6 N -1.009 6.009 7 C 0.087 3.913 8 S 2.605 3.395 9 O -0.971 6.971 10 O -0.950 6.950 11 C -0.554 4.554 12 C 0.043 3.957 13 C -0.516 4.516 14 H 0.068 0.932 15 C 0.082 3.918 16 N -0.875 5.875 17 Si 0.891 3.109 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.208 4.208 22 C -0.141 4.141 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.371 0.629 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.264 0.736 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 -6.423 -10.628 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.019 3.981 3 H 0.084 0.916 4 O -0.369 6.369 5 C 0.008 3.992 6 N -0.844 5.844 7 C -0.058 4.058 8 S 2.703 3.297 9 O -0.962 6.962 10 O -0.940 6.940 11 C -0.687 4.687 12 C 0.040 3.960 13 C -0.553 4.553 14 H 0.086 0.914 15 C -0.123 4.123 16 N -0.511 5.511 17 Si 0.717 3.283 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.246 4.246 22 C -0.181 4.181 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.218 0.782 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.194 -6.047 -10.347 12.402 hybrid contribution -0.917 0.512 0.436 1.137 sum -4.111 -5.535 -9.910 12.073 Atomic orbital electron populations 1.22458 0.96203 1.02620 1.02947 1.22398 0.92729 0.96639 0.86321 0.91576 1.86504 1.77228 1.57444 1.15746 1.21250 0.79859 1.01501 0.96564 1.57705 1.13023 1.49536 1.64168 1.21509 0.95453 0.91888 0.96978 1.05297 0.73774 0.73978 0.76674 1.93471 1.43546 1.84463 1.74688 1.93521 1.60616 1.52829 1.87033 1.30014 1.10589 1.08519 1.19555 1.18286 0.86412 0.94477 0.96798 1.20491 1.26042 0.93688 1.15107 0.91411 1.24952 0.95472 0.96742 0.95119 1.69973 1.29240 1.27501 1.24357 0.86658 0.79062 0.84203 0.78350 1.19468 1.21112 1.19871 1.23197 0.97984 1.02006 1.01370 1.22554 1.04771 0.97319 0.93427 0.91871 0.90966 0.92309 0.78202 0.90234 0.88510 0.93777 0.90077 0.90426 0.84964 0.88431 0.92678 0.90667 0.89534 0.89588 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.53 37.16 0.35 -1.56 16 2 C 0.08 1.05 3.82 -26.73 -0.10 0.95 16 3 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 4 O -0.56 -6.76 11.68 -35.23 -0.41 -7.17 16 5 C 0.13 1.93 4.97 -4.04 -0.02 1.91 16 6 N -1.01 -16.52 3.10 -121.76 -0.38 -16.90 16 7 C 0.09 1.22 10.46 59.85 0.63 1.85 16 8 S 2.60 54.22 5.11 -107.50 -0.55 53.68 16 9 O -0.97 -21.91 16.57 -57.54 -0.95 -22.86 16 10 O -0.95 -22.44 16.42 -57.54 -0.94 -23.39 16 11 C -0.55 -11.87 6.03 37.16 0.22 -11.65 16 12 C 0.04 1.05 1.32 -155.66 -0.21 0.85 16 13 C -0.52 -14.20 8.18 -34.44 -0.28 -14.48 16 14 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 15 C 0.08 2.24 5.38 -17.82 -0.10 2.15 16 16 N -0.88 -24.08 12.98 55.43 0.72 -23.36 16 17 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.21 -4.65 9.96 -26.70 -0.27 -4.91 16 22 C -0.14 -3.26 9.49 -26.69 -0.25 -3.52 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.37 2.94 9.08 45.56 0.41 3.35 16 27 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.10 1.41 7.61 -51.93 -0.40 1.02 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.04 6.65 -51.93 -0.35 0.69 16 31 H 0.08 1.15 6.91 -51.93 -0.36 0.79 16 32 H 0.13 2.92 8.14 -51.93 -0.42 2.50 16 33 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 34 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -32.81 329.65 -7.88 -40.69 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.29 Total: 6.48 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -0.02 Total: -28.41 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.34 Total: -40.26 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.31 Total: -53.42 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 54.22 SS G_CDS: -0.55 Total: 53.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.81 -7.88 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589128687.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.305 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds