Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36909 * 119.99897 * 2 1 4 4 H 1.08002 * 120.00114 * 139.31514 * 3 2 1 5 5 C 1.39019 * 120.00215 * 319.32088 * 3 2 1 6 6 N 1.31378 * 120.00189 * 161.53552 * 5 3 2 7 7 Si 1.86806 * 119.99894 * 341.52585 * 5 3 2 8 8 H 1.48503 * 109.46707 * 92.48131 * 7 5 3 9 9 H 1.48500 * 109.47197 * 212.47791 * 7 5 3 10 10 H 1.48499 * 109.46968 * 332.48122 * 7 5 3 11 11 C 1.34771 * 120.00043 * 180.02562 * 2 1 3 12 12 O 1.21625 * 120.00160 * 5.47887 * 11 2 1 13 13 C 1.47444 * 120.00063 * 185.47721 * 11 2 1 14 14 C 1.39968 * 120.31874 * 318.34992 * 13 11 2 15 15 C 1.37743 * 120.04372 * 179.97438 * 14 13 11 16 16 C 1.38647 * 120.43953 * 359.96189 * 15 14 13 17 17 C 1.38378 * 120.06858 * 0.02562 * 16 15 14 18 18 C 1.38745 * 120.15997 * 0.04884 * 17 16 15 19 19 O 1.36182 * 119.69633 * 179.79957 * 18 17 16 20 20 C 1.42918 * 115.91990 * 68.42383 * 19 18 17 21 21 C 1.52074 * 110.71520 * 275.56346 * 20 19 18 22 22 C 1.52068 * 112.36368 * 64.82987 * 21 20 19 23 23 O 1.36493 * 120.28613 * 180.02562 * 17 16 15 24 24 H 1.09004 * 109.47294 * 264.55447 * 1 2 3 25 25 H 1.09007 * 109.47303 * 24.55665 * 1 2 3 26 26 H 1.09005 * 109.47307 * 144.55577 * 1 2 3 27 27 H 0.97005 * 119.99971 * 179.97438 * 6 5 3 28 28 H 1.07998 * 119.98174 * 0.02562 * 14 13 11 29 29 H 1.07998 * 119.77797 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.96360 * 179.97438 * 16 15 14 31 31 H 1.08994 * 109.22483 * 35.91700 * 20 19 18 32 32 H 1.09005 * 109.21882 * 155.30303 * 20 19 18 33 33 H 1.09000 * 108.94922 * 304.06059 * 21 20 19 34 34 H 1.09003 * 108.86765 * 185.54791 * 21 20 19 35 35 H 1.08997 * 109.21314 * 174.78967 * 22 21 20 36 36 H 1.09006 * 109.21244 * 55.42123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.0337 1.2987 0.6097 5 6 1.7063 2.2442 -0.7847 6 7 2.1152 3.4666 -0.5305 7 14 0.5297 1.9284 -2.2009 8 1 -0.8688 2.0879 -1.7273 9 1 0.7966 2.8995 -3.2922 10 1 0.7258 0.5468 -2.7087 11 6 2.1388 -1.1671 -0.0005 12 8 1.5349 -2.2180 -0.1016 13 6 3.6082 -1.1701 0.1214 14 6 4.3770 -0.2311 -0.5760 15 6 5.7493 -0.2387 -0.4576 16 6 6.3794 -1.1723 0.3508 17 6 5.6305 -2.1057 1.0456 18 6 4.2475 -2.1116 0.9353 19 8 3.5200 -3.0370 1.6201 20 6 3.5074 -2.8942 3.0421 21 6 4.7273 -3.5592 3.6603 22 6 6.0258 -2.8841 3.2474 23 8 6.2462 -3.0265 1.8432 24 1 -0.3634 -0.0975 1.0231 25 1 -0.3634 0.9348 -0.4271 26 1 -0.3634 -0.8372 -0.5960 27 1 1.8063 4.2051 -1.0784 28 1 3.8938 0.5004 -1.2068 29 1 6.3383 0.4876 -0.9980 30 1 7.4559 -1.1715 0.4377 31 1 3.5081 -1.8344 3.2963 32 1 2.6055 -3.3583 3.4413 33 1 4.7575 -4.6032 3.3485 34 1 4.6382 -3.5194 4.7460 35 1 6.8549 -3.3396 3.7889 36 1 5.9740 -1.8241 3.4966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593441184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -60.973203 kcal Electronic energy + Delta-G solvation = -22351.958642 eV Core-core repulsion = 18995.863210 eV Total energy + Delta-G solvation = -3356.095433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59258 -38.79158 -37.12667 -36.76478 -34.89235 -32.69508 -32.00516 -30.56805 -28.70224 -26.87946 -26.09705 -25.07332 -22.85889 -21.60016 -21.50749 -19.37637 -18.26721 -17.34873 -16.89861 -16.32286 -15.78656 -15.27967 -15.07208 -14.92294 -14.64684 -14.15998 -13.86995 -13.76261 -13.50797 -12.99235 -12.71496 -12.62805 -12.23136 -12.07720 -11.69361 -11.49025 -11.40151 -10.90538 -10.85249 -10.73281 -10.34877 -10.20287 -10.05635 -9.70939 -9.28544 -8.68623 -8.27844 -8.08021 -7.78960 -6.56372 -4.18817 1.40994 1.57050 2.99983 3.16830 3.26088 3.52334 3.70404 3.86816 4.05251 4.35632 4.38907 4.72547 4.81390 4.87771 5.17332 5.27367 5.38633 5.45874 5.50498 5.64676 5.70578 5.81369 5.84619 5.96719 6.01415 6.07880 6.22341 6.27482 6.47688 6.63856 6.76322 6.91304 7.08150 7.27257 7.43725 7.93678 7.98148 8.16027 8.84955 9.24533 9.59482 10.52610 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.006561 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.356592 B = 4266.673208 C = 4850.254949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.465 5.465 3 C -0.349 4.349 4 H 0.107 0.893 5 C 0.066 3.934 6 N -0.857 5.857 7 Si 0.878 3.122 8 H -0.273 1.273 9 H -0.287 1.287 10 H -0.260 1.260 11 C 0.522 3.478 12 O -0.574 6.574 13 C -0.094 4.094 14 C -0.049 4.049 15 C -0.130 4.130 16 C -0.109 4.109 17 C 0.041 3.959 18 C 0.101 3.899 19 O -0.300 6.300 20 C 0.059 3.941 21 C -0.185 4.185 22 C 0.059 3.941 23 O -0.320 6.320 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.277 0.723 28 H 0.158 0.842 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -5.920 5.500 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.186 5.186 3 C -0.476 4.476 4 H 0.125 0.875 5 C -0.141 4.141 6 N -0.492 5.492 7 Si 0.705 3.295 8 H -0.199 1.199 9 H -0.213 1.213 10 H -0.184 1.184 11 C 0.312 3.688 12 O -0.458 6.458 13 C -0.098 4.098 14 C -0.067 4.067 15 C -0.148 4.148 16 C -0.127 4.127 17 C -0.003 4.003 18 C 0.055 3.945 19 O -0.216 6.216 20 C -0.016 4.016 21 C -0.223 4.223 22 C -0.016 4.016 23 O -0.237 6.237 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.125 -6.516 5.295 10.393 hybrid contribution -0.624 0.431 -0.324 0.825 sum 5.500 -6.085 4.971 9.591 Atomic orbital electron populations 1.21805 0.82533 1.01332 1.01136 1.43507 1.04328 1.05581 1.65164 1.19145 1.13243 0.87883 1.27362 0.87510 1.25367 0.96999 0.94663 0.97110 1.69717 1.43310 0.98641 1.37547 0.86936 0.80764 0.79406 0.82426 1.19946 1.21331 1.18360 1.17985 0.86272 0.83942 0.80644 1.90678 1.69461 1.31751 1.53884 1.19997 0.94865 0.94401 1.00501 1.21869 0.92843 0.95330 0.96706 1.21040 0.94716 0.99044 1.00039 1.21081 0.99957 0.93199 0.98506 1.18917 0.89703 0.93449 0.98241 1.19123 0.88660 0.90442 0.96232 1.86431 1.69457 1.48150 1.17550 1.22577 0.98229 1.00495 0.80309 1.22480 0.95719 1.02630 1.01424 1.22584 0.97610 1.00481 0.80916 1.86337 1.70589 1.50362 1.16369 0.93330 0.91826 0.91998 0.91295 0.82421 0.85091 0.85344 0.92615 0.88250 0.90056 0.89649 0.88350 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 8.98 59.84 0.54 2.19 16 2 N -0.46 -11.37 2.53 -123.41 -0.31 -11.68 16 3 C -0.35 -8.79 6.88 -15.00 -0.10 -8.89 16 4 H 0.11 2.82 6.69 -52.49 -0.35 2.47 16 5 C 0.07 1.68 5.32 -17.46 -0.09 1.58 16 6 N -0.86 -22.52 13.95 55.50 0.77 -21.75 16 7 Si 0.88 19.83 25.03 -169.99 -4.26 15.57 16 8 H -0.27 -5.93 6.61 56.52 0.37 -5.56 16 9 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 11 C 0.52 12.95 7.10 -12.51 -0.09 12.87 16 12 O -0.57 -15.44 15.86 -9.36 -0.15 -15.59 16 13 C -0.09 -2.09 5.30 -104.87 -0.56 -2.65 16 14 C -0.05 -0.98 7.80 -39.11 -0.31 -1.28 16 15 C -0.13 -2.15 10.02 -39.61 -0.40 -2.55 16 16 C -0.11 -1.73 9.99 -39.38 -0.39 -2.12 16 17 C 0.04 0.73 5.73 -39.34 -0.23 0.51 16 18 C 0.10 2.09 5.70 -38.77 -0.22 1.87 16 19 O -0.30 -6.20 9.01 -45.99 -0.41 -6.62 16 20 C 0.06 0.92 6.52 36.69 0.24 1.16 16 21 C -0.18 -2.24 5.92 -27.68 -0.16 -2.41 16 22 C 0.06 0.74 6.51 36.68 0.24 0.98 16 23 O -0.32 -5.26 10.16 -36.82 -0.37 -5.63 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.39 3.62 -51.93 -0.19 1.20 16 26 H 0.06 1.34 7.52 -51.93 -0.39 0.95 16 27 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.16 3.34 6.25 -52.49 -0.33 3.01 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -30.80 294.21 -6.03 -36.83 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.20 Total: 3.18 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.53 Total: 1.25 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.46 Total: -33.42 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.94 Total: -27.84 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.26 Total: 15.57 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.80 -6.03 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593441184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds