Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36909 * 119.99897 * 2 1 4 4 H 1.08002 * 120.00114 * 139.31514 * 3 2 1 5 5 C 1.39019 * 120.00215 * 319.32088 * 3 2 1 6 6 N 1.31378 * 120.00189 * 161.53552 * 5 3 2 7 7 Si 1.86806 * 119.99894 * 341.52585 * 5 3 2 8 8 H 1.48503 * 109.46707 * 92.48131 * 7 5 3 9 9 H 1.48500 * 109.47197 * 212.47791 * 7 5 3 10 10 H 1.48499 * 109.46968 * 332.48122 * 7 5 3 11 11 C 1.34771 * 120.00043 * 180.02562 * 2 1 3 12 12 O 1.21625 * 120.00160 * 5.47887 * 11 2 1 13 13 C 1.47444 * 120.00063 * 185.47721 * 11 2 1 14 14 C 1.39968 * 120.31874 * 318.34992 * 13 11 2 15 15 C 1.37743 * 120.04372 * 179.97438 * 14 13 11 16 16 C 1.38647 * 120.43953 * 359.96189 * 15 14 13 17 17 C 1.38378 * 120.06858 * 0.02562 * 16 15 14 18 18 C 1.38745 * 120.15997 * 0.04884 * 17 16 15 19 19 O 1.36182 * 119.69633 * 179.79957 * 18 17 16 20 20 C 1.42918 * 115.91990 * 68.42383 * 19 18 17 21 21 C 1.52074 * 110.71520 * 275.56346 * 20 19 18 22 22 C 1.52068 * 112.36368 * 64.82987 * 21 20 19 23 23 O 1.36493 * 120.28613 * 180.02562 * 17 16 15 24 24 H 1.09004 * 109.47294 * 264.55447 * 1 2 3 25 25 H 1.09007 * 109.47303 * 24.55665 * 1 2 3 26 26 H 1.09005 * 109.47307 * 144.55577 * 1 2 3 27 27 H 0.97005 * 119.99971 * 179.97438 * 6 5 3 28 28 H 1.07998 * 119.98174 * 0.02562 * 14 13 11 29 29 H 1.07998 * 119.77797 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.96360 * 179.97438 * 16 15 14 31 31 H 1.08994 * 109.22483 * 35.91700 * 20 19 18 32 32 H 1.09005 * 109.21882 * 155.30303 * 20 19 18 33 33 H 1.09000 * 108.94922 * 304.06059 * 21 20 19 34 34 H 1.09003 * 108.86765 * 185.54791 * 21 20 19 35 35 H 1.08997 * 109.21314 * 174.78967 * 22 21 20 36 36 H 1.09006 * 109.21244 * 55.42123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1857 0.0000 4 1 3.0337 1.2987 0.6097 5 6 1.7063 2.2442 -0.7847 6 7 2.1152 3.4666 -0.5305 7 14 0.5297 1.9284 -2.2009 8 1 -0.8688 2.0879 -1.7273 9 1 0.7966 2.8995 -3.2922 10 1 0.7258 0.5468 -2.7087 11 6 2.1388 -1.1671 -0.0005 12 8 1.5349 -2.2180 -0.1016 13 6 3.6082 -1.1701 0.1214 14 6 4.3770 -0.2311 -0.5760 15 6 5.7493 -0.2387 -0.4576 16 6 6.3794 -1.1723 0.3508 17 6 5.6305 -2.1057 1.0456 18 6 4.2475 -2.1116 0.9353 19 8 3.5200 -3.0370 1.6201 20 6 3.5074 -2.8942 3.0421 21 6 4.7273 -3.5592 3.6603 22 6 6.0258 -2.8841 3.2474 23 8 6.2462 -3.0265 1.8432 24 1 -0.3634 -0.0975 1.0231 25 1 -0.3634 0.9348 -0.4271 26 1 -0.3634 -0.8372 -0.5960 27 1 1.8063 4.2051 -1.0784 28 1 3.8938 0.5004 -1.2068 29 1 6.3383 0.4876 -0.9980 30 1 7.4559 -1.1715 0.4377 31 1 3.5081 -1.8344 3.2963 32 1 2.6055 -3.3583 3.4413 33 1 4.7575 -4.6032 3.3485 34 1 4.6382 -3.5194 4.7460 35 1 6.8549 -3.3396 3.7889 36 1 5.9740 -1.8241 3.4966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593441184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -80.437175 kcal Electronic energy + Delta-G solvation = -22352.802664 eV Core-core repulsion = 18995.863210 eV Total energy + Delta-G solvation = -3356.939454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99442 -40.52379 -38.49814 -38.16749 -36.83616 -33.98080 -33.82672 -32.06043 -30.08863 -28.51578 -27.42015 -26.95871 -24.37940 -22.93377 -22.72801 -21.10790 -19.85195 -18.89595 -18.41733 -17.90579 -17.37044 -16.87541 -16.51248 -16.33687 -15.99241 -15.90069 -15.55537 -15.04507 -14.75642 -14.61040 -14.40240 -14.09788 -14.05135 -13.54826 -13.20146 -12.99800 -12.91113 -12.71615 -12.23848 -12.08718 -11.90655 -11.85957 -11.36004 -11.23949 -11.02869 -10.52081 -9.80146 -9.75615 -9.42401 -8.52212 -6.17519 -0.06570 0.17602 1.18837 1.32610 1.43673 1.85464 2.16522 2.33414 2.47901 2.63224 2.87141 3.01142 3.70387 3.75074 3.91270 4.13082 4.17303 4.23440 4.33040 4.33906 4.39282 4.43894 4.48849 4.50300 4.65175 4.71127 4.77109 4.88296 5.06550 5.24211 5.32951 5.36792 5.48197 5.67622 6.01057 6.16572 6.19571 6.58763 6.89358 7.30082 7.67666 8.59798 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.006561 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.356592 B = 4266.673208 C = 4850.254949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.473 5.473 3 C -0.344 4.344 4 H 0.088 0.912 5 C 0.038 3.962 6 N -0.888 5.888 7 Si 0.923 3.077 8 H -0.255 1.255 9 H -0.279 1.279 10 H -0.275 1.275 11 C 0.517 3.483 12 O -0.606 6.606 13 C -0.133 4.133 14 C -0.063 4.063 15 C -0.119 4.119 16 C -0.091 4.091 17 C 0.041 3.959 18 C 0.086 3.914 19 O -0.334 6.334 20 C 0.047 3.953 21 C -0.176 4.176 22 C 0.050 3.950 23 O -0.330 6.330 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.283 0.717 28 H 0.138 0.862 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -6.132 6.227 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.194 5.194 3 C -0.471 4.471 4 H 0.105 0.895 5 C -0.167 4.167 6 N -0.524 5.524 7 Si 0.749 3.251 8 H -0.181 1.181 9 H -0.205 1.205 10 H -0.200 1.200 11 C 0.307 3.693 12 O -0.492 6.492 13 C -0.136 4.136 14 C -0.082 4.082 15 C -0.136 4.136 16 C -0.110 4.110 17 C -0.002 4.002 18 C 0.041 3.959 19 O -0.250 6.250 20 C -0.027 4.027 21 C -0.214 4.214 22 C -0.024 4.024 23 O -0.247 6.247 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.184 0.816 30 H 0.187 0.813 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.810 -6.711 6.039 11.937 hybrid contribution -1.076 0.424 -0.442 1.238 sum 6.734 -6.287 5.597 10.779 Atomic orbital electron populations 1.21913 0.81500 1.01545 1.02245 1.43651 1.05220 1.05357 1.65187 1.18943 1.12955 0.88058 1.27146 0.89458 1.25763 0.98277 0.94297 0.98366 1.69756 1.44731 0.99279 1.38596 0.86215 0.80250 0.78347 0.80316 1.18101 1.20491 1.20020 1.18492 0.87666 0.83456 0.79656 1.90625 1.70569 1.32631 1.55353 1.19987 0.93529 0.96884 1.03238 1.21745 0.94488 0.94858 0.97064 1.21367 0.93272 0.99510 0.99481 1.21497 1.01759 0.91426 0.96293 1.19070 0.88743 0.93803 0.98633 1.19345 0.89931 0.90235 0.96438 1.86349 1.70270 1.48413 1.20003 1.22894 1.00805 1.00648 0.78335 1.22440 0.93847 1.01696 1.03387 1.22956 0.99139 1.01271 0.79015 1.86310 1.70087 1.50132 1.18186 0.91801 0.91410 0.91876 0.90729 0.84422 0.81622 0.81262 0.93474 0.87323 0.90345 0.85761 0.84495 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.13 8.98 127.77 1.15 4.28 16 2 N -0.47 -23.73 2.53 -662.62 -1.68 -25.41 16 3 C -0.34 -17.70 6.88 84.09 0.58 -17.12 16 4 H 0.09 4.78 6.69 -2.91 -0.02 4.76 16 5 C 0.04 1.95 5.32 84.95 0.45 2.40 16 6 N -0.89 -46.75 13.95 21.68 0.30 -46.45 16 7 Si 0.92 40.69 25.03 68.60 1.72 42.41 16 8 H -0.26 -10.50 6.61 99.48 0.66 -9.84 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 C 0.52 26.57 7.10 86.67 0.62 27.19 16 12 O -0.61 -33.84 15.86 9.87 0.16 -33.68 16 13 C -0.13 -6.08 5.30 -20.03 -0.11 -6.19 16 14 C -0.06 -2.55 7.80 22.57 0.18 -2.37 16 15 C -0.12 -3.69 10.02 22.25 0.22 -3.47 16 16 C -0.09 -2.64 9.99 22.40 0.22 -2.42 16 17 C 0.04 1.43 5.73 22.42 0.13 1.56 16 18 C 0.09 3.59 5.70 22.80 0.13 3.72 16 19 O -0.33 -14.06 9.01 -71.09 -0.64 -14.70 16 20 C 0.05 1.46 6.52 71.68 0.47 1.93 16 21 C -0.18 -3.85 5.92 29.98 0.18 -3.68 16 22 C 0.05 1.10 6.51 71.67 0.47 1.57 16 23 O -0.33 -10.02 10.16 -84.42 -0.86 -10.88 16 24 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.07 2.92 3.62 -2.38 -0.01 2.92 16 26 H 0.06 2.76 7.52 -2.38 -0.02 2.74 16 27 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 28 H 0.14 6.05 6.25 -2.91 -0.02 6.03 16 29 H 0.17 3.95 8.06 -2.91 -0.02 3.92 16 30 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.05 1.49 7.93 -2.39 -0.02 1.47 16 32 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.28 7.93 -2.38 -0.02 1.26 16 Total: -1.00 -68.41 294.21 4.74 -63.67 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 1.06 Total: 17.62 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.68 Total: 7.40 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.37 Total: -71.86 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -1.34 Total: -59.26 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.72 Total: 42.41 kcal Total: -68.41 4.74 -63.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593441184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.764 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds