Wall clock time and date at job start Mon Mar 30 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47466 * 2 1 4 4 O 1.42897 * 109.47275 * 120.00448 * 2 1 3 5 5 C 1.53002 * 109.46950 * 240.00239 * 2 1 3 6 6 N 1.46501 * 109.46849 * 180.02562 * 5 2 1 7 7 C 1.46496 * 119.99919 * 274.99735 * 6 5 2 8 8 C 1.52998 * 117.50208 * 8.74864 * 7 6 5 9 9 C 1.53004 * 117.49982 * 300.08652 * 7 6 5 10 10 S 1.65600 * 120.00052 * 95.00130 * 6 5 2 11 11 O 1.42098 * 104.27576 * 333.92695 * 10 6 5 12 12 O 1.42102 * 104.27841 * 206.06822 * 10 6 5 13 13 C 1.81404 * 104.45074 * 89.99648 * 10 6 5 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 6 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 10 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00489 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00464 * 19 17 15 23 23 H 1.08990 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46902 * 300.00224 * 1 2 3 25 25 H 1.09005 * 109.46792 * 59.99885 * 1 2 3 26 26 H 0.96704 * 114.00014 * 59.99470 * 4 2 1 27 27 H 1.08998 * 109.47301 * 59.99897 * 5 2 1 28 28 H 1.09003 * 109.47154 * 299.99920 * 5 2 1 29 29 H 1.09002 * 115.54878 * 154.42264 * 7 6 5 30 30 H 1.09001 * 117.49454 * 359.97438 * 8 7 6 31 31 H 1.08993 * 117.50225 * 145.01934 * 8 7 6 32 32 H 1.08998 * 117.49985 * 214.97691 * 9 7 6 33 33 H 1.08994 * 117.49972 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47124 * 60.00022 * 13 10 6 35 35 H 1.09001 * 109.46975 * 300.00144 * 13 10 6 36 36 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 37 37 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 38 38 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5050 -0.7217 -1.2490 7 6 4.2380 0.4279 -1.7848 8 6 3.4301 1.6778 -2.1397 9 6 4.0025 0.7947 -3.2514 10 16 4.3324 -2.0219 -0.6430 11 8 3.4359 -2.6016 0.2949 12 8 5.5790 -1.4812 -0.2272 13 6 4.5586 -3.1194 -2.0695 14 6 5.3195 -4.3729 -1.6329 15 6 5.5080 -5.2844 -2.8182 16 1 5.1238 -4.9980 -3.7861 17 6 6.1718 -6.4834 -2.6671 18 7 6.6400 -6.8319 -1.4887 19 14 6.4047 -7.6136 -4.1362 20 1 7.1781 -6.9054 -5.1877 21 1 7.1435 -8.8302 -3.7125 22 1 5.0775 -8.0037 -4.6759 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.7210 -1.5953 1.2328 27 1 1.6766 -0.2074 -2.1393 28 1 1.6766 -1.7489 -1.2493 29 1 5.2412 0.5739 -1.3844 30 1 2.3532 1.6445 -1.9749 31 1 3.9019 2.6461 -1.9732 32 1 4.8506 1.1826 -3.8157 33 1 3.3025 0.1805 -3.8177 34 1 5.1262 -2.5997 -2.8414 35 1 3.5843 -3.4058 -2.4657 36 1 6.2938 -4.0869 -1.2365 37 1 4.7516 -4.8925 -0.8613 38 1 7.1073 -7.6752 -1.3824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594490200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:10 Heat of formation + Delta-G solvation = -105.668473 kcal Electronic energy + Delta-G solvation = -20705.543986 eV Core-core repulsion = 17482.954373 eV Total energy + Delta-G solvation = -3222.589614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.87182 -37.11953 -36.28558 -35.35419 -33.88510 -33.08200 -31.15149 -30.91659 -26.37502 -25.57656 -22.65128 -22.08773 -21.67989 -20.91778 -18.70915 -17.78967 -16.93538 -16.51560 -15.74671 -15.35507 -15.28735 -15.02255 -14.63722 -14.54098 -14.16248 -13.39904 -13.13292 -12.54824 -12.45375 -12.27484 -11.95093 -11.85615 -11.72139 -11.64530 -11.59575 -11.49453 -11.19902 -11.07212 -10.96534 -10.72533 -10.44008 -10.38633 -10.37382 -10.11312 -9.73014 -9.25901 -8.52881 -8.50422 -6.12484 -4.18306 0.75891 2.96443 3.26642 3.31541 3.33314 3.72785 4.32250 4.37980 4.42673 4.48704 4.65062 4.81488 4.85069 4.94179 4.98023 5.02196 5.15463 5.22465 5.40010 5.43294 5.54326 5.60414 5.66103 5.75036 5.81760 5.87648 5.98396 6.04694 6.26079 6.49348 6.68346 7.29737 7.36033 7.80092 7.94916 8.17523 8.84810 9.46398 10.98495 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.004958 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.953460 B = 5646.581599 C = 6007.479921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.098 0.902 4 O -0.556 6.556 5 C 0.089 3.911 6 N -0.971 5.971 7 C 0.085 3.915 8 C -0.184 4.184 9 C -0.198 4.198 10 S 2.601 3.399 11 O -0.958 6.958 12 O -0.963 6.963 13 C -0.593 4.593 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.386 0.614 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 15.589 -2.124 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.022 3.978 3 H 0.116 0.884 4 O -0.364 6.364 5 C -0.037 4.037 6 N -0.803 5.803 7 C -0.022 4.022 8 C -0.223 4.223 9 C -0.238 4.238 10 S 2.700 3.300 11 O -0.948 6.948 12 O -0.953 6.953 13 C -0.726 4.726 14 C -0.010 4.010 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.237 0.763 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.160 0.840 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.320 15.919 -0.966 18.996 hybrid contribution -0.324 -1.255 -1.738 2.168 sum -10.644 14.664 -2.705 18.320 Atomic orbital electron populations 1.22487 0.96435 1.02834 1.02609 1.22330 0.92434 0.97308 0.85760 0.88398 1.86540 1.77390 1.30189 1.42271 1.22031 0.80026 1.02440 0.99237 1.57330 1.13453 1.31304 1.78182 1.21518 0.97357 0.87862 0.95475 1.23299 1.00293 0.95092 1.03578 1.23458 1.04109 1.03744 0.92442 1.05479 0.73504 0.73836 0.77152 1.93426 1.64822 1.77763 1.58802 1.93512 1.44021 1.76999 1.80772 1.30547 1.10045 1.13970 1.18027 1.18948 0.94979 0.88613 0.98460 1.20965 1.37279 1.03073 0.94738 0.92156 1.25063 0.95277 0.97923 0.96155 1.69942 1.37217 1.23134 1.22545 0.86534 0.78375 0.79947 0.82435 1.20068 1.21036 1.20106 0.91973 0.91609 0.91782 0.76292 0.89922 0.89538 0.84021 0.88372 0.88128 0.87990 0.88428 0.86269 0.86568 0.94910 0.94885 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 9.53 37.16 0.35 -1.21 16 2 C 0.08 0.93 3.63 -26.73 -0.10 0.83 16 3 H 0.10 1.07 6.95 -51.93 -0.36 0.71 16 4 O -0.56 -8.27 11.80 -56.27 -0.66 -8.94 16 5 C 0.09 0.99 4.35 -4.04 -0.02 0.97 16 6 N -0.97 -13.33 2.93 -107.30 -0.31 -13.64 16 7 C 0.09 1.04 6.36 -67.93 -0.43 0.61 16 8 C -0.18 -1.66 9.26 -26.69 -0.25 -1.91 16 9 C -0.20 -1.91 10.12 -26.69 -0.27 -2.18 16 10 S 2.60 47.37 5.31 -107.50 -0.57 46.80 16 11 O -0.96 -18.74 14.05 -66.03 -0.93 -19.67 16 12 O -0.96 -20.60 16.75 -57.54 -0.96 -21.57 16 13 C -0.59 -11.47 6.12 37.16 0.23 -11.24 16 14 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 15 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.39 5.45 7.53 45.56 0.34 5.79 16 27 H 0.08 0.70 6.56 -51.93 -0.34 0.36 16 28 H 0.09 0.94 7.61 -51.93 -0.39 0.54 16 29 H 0.14 1.86 7.28 -51.93 -0.38 1.48 16 30 H 0.10 0.79 5.74 -51.93 -0.30 0.49 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 35 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -34.13 322.96 -9.09 -43.22 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.19 Total: 5.29 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -1.03 Total: -26.73 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.42 Total: -39.43 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -2.56 Total: -50.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 47.37 SS G_CDS: -0.57 Total: 46.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.13 -9.09 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594490200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.448 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds