Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46791 * 2 1 4 4 C 1.53001 * 109.47239 * 240.00775 * 2 1 3 5 5 C 1.52995 * 109.47078 * 174.99950 * 4 2 1 6 6 O 1.42908 * 109.47090 * 179.97438 * 5 4 2 7 7 N 1.46491 * 109.47409 * 120.00217 * 2 1 3 8 8 S 1.65598 * 120.00140 * 265.00432 * 7 2 1 9 9 O 1.42101 * 104.27895 * 308.92653 * 8 7 2 10 10 O 1.42101 * 104.28027 * 181.07080 * 8 7 2 11 11 C 1.81399 * 104.45215 * 64.99951 * 8 7 2 12 12 C 1.52996 * 109.47278 * 180.02562 * 11 8 7 13 13 C 1.50705 * 115.54919 * 294.15329 * 12 11 8 14 14 H 1.07999 * 119.99847 * 114.68308 * 13 12 11 15 15 C 1.37876 * 120.00075 * 294.41424 * 13 12 11 16 16 N 1.31509 * 120.00066 * 177.04480 * 15 13 12 17 17 Si 1.86804 * 119.99893 * 357.03676 * 15 13 12 18 18 H 1.48509 * 109.46895 * 93.43449 * 17 15 13 19 19 H 1.48497 * 109.47014 * 213.43453 * 17 15 13 20 20 H 1.48501 * 109.47265 * 333.43885 * 17 15 13 21 21 C 1.52997 * 117.50200 * 79.82577 * 12 11 8 22 22 C 1.52998 * 117.49968 * 148.48400 * 12 11 8 23 23 H 1.09004 * 109.47116 * 59.99989 * 1 2 3 24 24 H 1.09001 * 109.46708 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47353 * 299.99454 * 1 2 3 26 26 H 1.09004 * 109.46978 * 294.99691 * 4 2 1 27 27 H 1.08992 * 109.47516 * 54.99239 * 4 2 1 28 28 H 1.09004 * 109.47101 * 299.99178 * 5 4 2 29 29 H 1.09001 * 109.47561 * 59.99902 * 5 4 2 30 30 H 0.96702 * 113.99820 * 179.97438 * 6 5 4 31 31 H 0.97001 * 120.00233 * 84.99693 * 7 2 1 32 32 H 1.09001 * 109.47227 * 60.01539 * 11 8 7 33 33 H 1.09005 * 109.46805 * 300.02110 * 11 8 7 34 34 H 0.96997 * 119.99657 * 180.02562 * 16 15 13 35 35 H 1.09004 * 117.49719 * 215.00437 * 21 12 11 36 36 H 1.09004 * 117.50053 * 0.02562 * 21 12 11 37 37 H 1.08997 * 117.50023 * 359.97438 * 22 12 11 38 38 H 1.09008 * 117.50097 * 144.97061 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 8 4.0413 -1.2871 -2.4803 7 7 2.0184 -0.6906 1.1960 8 16 2.4122 0.1771 2.5504 9 8 3.2874 1.1906 2.0751 10 8 2.8607 -0.8030 3.4765 11 6 0.8407 0.8987 3.0985 12 6 1.0753 1.7347 4.3582 13 6 1.5026 0.9631 5.5802 14 1 2.4835 1.1216 6.0032 15 6 0.6391 0.0589 6.1614 16 7 1.0323 -0.6567 7.1923 17 14 -1.0895 -0.1496 5.4846 18 1 -1.1040 -1.2587 4.4970 19 1 -2.0218 -0.4647 6.5966 20 1 -1.5168 1.1088 4.8218 21 6 1.6470 3.1421 4.1758 22 6 0.1801 2.9569 4.5718 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.7517 -1.7714 -1.2058 27 1 1.6054 -0.2616 -2.1370 28 1 3.8532 0.4372 -1.3574 29 1 3.9995 -1.0727 -0.4261 30 1 5.0021 -1.2588 -2.5861 31 1 2.1110 -1.6562 1.1948 32 1 0.1317 0.1007 3.3187 33 1 0.4384 1.5348 2.3100 34 1 0.4249 -1.2930 7.6009 35 1 2.3322 3.5099 4.9397 36 1 1.8556 3.4727 3.1583 37 1 -0.5757 3.1657 3.8147 38 1 -0.1003 3.2027 5.5962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594756845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = -136.452706 kcal Electronic energy + Delta-G solvation = -20963.729630 eV Core-core repulsion = 17739.805112 eV Total energy + Delta-G solvation = -3223.924518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.86919 -38.79383 -37.94297 -36.98105 -36.80540 -34.30524 -31.86442 -30.41578 -29.55856 -27.56426 -24.18944 -23.25659 -22.10464 -21.36401 -20.39476 -18.69685 -18.59793 -18.28051 -17.25163 -16.96014 -16.77170 -16.16245 -15.63685 -15.50625 -15.33392 -14.96785 -14.59538 -14.39420 -13.99213 -13.81237 -13.27546 -13.15021 -12.97137 -12.94718 -12.80098 -12.64893 -12.41612 -12.33551 -12.16054 -12.02049 -11.89331 -11.76885 -11.53371 -10.96498 -10.90028 -10.73008 -10.56578 -10.15319 -8.30440 -6.41320 -0.58227 1.27396 1.36618 1.50115 1.96935 2.34815 2.88733 2.96979 3.18921 3.23874 3.38215 3.78584 3.97984 4.01164 4.02180 4.19459 4.30358 4.41337 4.43687 4.49815 4.55608 4.59864 4.69861 4.90811 4.94660 4.98016 5.00072 5.14988 5.21755 5.32777 5.41684 5.49484 5.61968 6.12254 6.23303 6.67490 6.84116 7.29184 8.86246 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.006176 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.532037 B = 4532.498989 C = 4578.889797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 H 0.097 0.903 4 C -0.115 4.115 5 C 0.066 3.934 6 O -0.590 6.590 7 N -1.115 6.115 8 S 2.618 3.382 9 O -0.986 6.986 10 O -0.993 6.993 11 C -0.576 4.576 12 C -0.036 4.036 13 C -0.507 4.507 14 H 0.027 0.973 15 C 0.027 3.973 16 N -0.941 5.941 17 Si 0.913 3.087 18 H -0.260 1.260 19 H -0.292 1.292 20 H -0.203 1.203 21 C -0.178 4.178 22 C -0.157 4.157 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.396 0.604 31 H 0.421 0.579 32 H 0.120 0.880 33 H 0.162 0.838 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 2.588 -20.077 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.031 3.969 3 H 0.115 0.885 4 C -0.154 4.154 5 C -0.012 4.012 6 O -0.399 6.399 7 N -0.876 5.876 8 S 2.714 3.286 9 O -0.976 6.976 10 O -0.983 6.983 11 C -0.708 4.708 12 C -0.039 4.039 13 C -0.544 4.544 14 H 0.046 0.954 15 C -0.173 4.173 16 N -0.579 5.579 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.219 1.219 20 H -0.124 1.124 21 C -0.215 4.215 22 C -0.196 4.196 23 H 0.115 0.885 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.245 0.755 31 H 0.256 0.744 32 H 0.138 0.862 33 H 0.180 0.820 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.675 2.609 -19.679 20.188 hybrid contribution -0.196 -0.847 0.843 1.211 sum -3.870 1.763 -18.836 19.310 Atomic orbital electron populations 1.22515 0.93352 1.04117 1.04130 1.21056 0.95394 0.96873 0.83597 0.88537 1.21729 0.93743 1.02425 0.97491 1.22267 0.95760 0.96156 0.87002 1.86375 1.29049 1.78898 1.45538 1.55742 1.84356 1.20046 1.27502 1.04465 0.77488 0.74137 0.72464 1.93473 1.62549 1.61383 1.80223 1.93557 1.80712 1.60189 1.63877 1.30274 1.21276 1.11802 1.07407 1.18780 1.05658 0.87502 0.91925 1.20459 1.00740 1.22531 1.10712 0.95424 1.25890 1.03115 0.93823 0.94426 1.70056 1.38069 1.25144 1.24646 0.86272 0.79108 0.81934 0.79169 1.18567 1.21895 1.12425 1.23114 0.97200 0.98575 1.02618 1.23143 0.92785 1.01559 1.02128 0.88497 0.91071 0.91845 0.90255 0.88049 0.92942 0.94469 0.75493 0.74389 0.86236 0.82036 0.92414 0.90272 0.86855 0.86794 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.48 71.98 0.68 -2.07 16 2 C 0.14 2.66 2.81 44.99 0.13 2.78 16 3 H 0.10 1.84 7.48 -2.39 -0.02 1.82 16 4 C -0.11 -1.99 5.18 30.59 0.16 -1.83 16 5 C 0.07 1.34 6.93 71.98 0.50 1.84 16 6 O -0.59 -11.43 13.66 -148.98 -2.04 -13.47 16 7 N -1.12 -29.33 4.81 -169.40 -0.82 -30.14 16 8 S 2.62 99.76 5.26 -56.49 -0.30 99.47 16 9 O -0.99 -39.50 17.39 -127.65 -2.22 -41.72 16 10 O -0.99 -49.77 17.44 -127.65 -2.23 -51.99 16 11 C -0.58 -20.43 4.69 71.98 0.34 -20.09 16 12 C -0.04 -1.57 0.78 -52.93 -0.04 -1.61 16 13 C -0.51 -29.01 8.53 25.60 0.22 -28.79 16 14 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 15 C 0.03 1.54 5.47 84.66 0.46 2.00 16 16 N -0.94 -60.05 13.96 21.45 0.30 -59.76 16 17 Si 0.91 40.97 24.85 68.60 1.70 42.67 16 18 H -0.26 -10.92 7.05 99.48 0.70 -10.22 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.20 -7.63 5.81 99.48 0.58 -7.05 16 21 C -0.18 -6.72 9.96 30.62 0.30 -6.42 16 22 C -0.16 -5.70 8.17 30.62 0.25 -5.45 16 23 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.00 5.78 -2.39 -0.01 0.99 16 26 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.04 0.85 7.75 -2.39 -0.02 0.83 16 30 H 0.40 4.45 9.12 -74.06 -0.68 3.77 16 31 H 0.42 10.04 8.80 -96.75 -0.85 9.19 16 32 H 0.12 4.26 4.90 -2.39 -0.01 4.25 16 33 H 0.16 3.96 6.72 -2.39 -0.02 3.94 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 36 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -80.91 319.53 -3.18 -84.09 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.59 Total: 30.47 kcal Atomic # 6 Polarization: -62.62 SS G_CDS: 3.00 Total: -59.62 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -0.52 Total: -89.90 kcal Atomic # 8 Polarization: -100.70 SS G_CDS: -6.48 Total: -107.18 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.70 Total: 42.67 kcal Atomic # 16 Polarization: 99.76 SS G_CDS: -0.30 Total: 99.47 kcal Total: -80.91 -3.18 -84.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594756845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.363 kcal (2) G-P(sol) polarization free energy of solvation -80.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds