Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46843 * 2 1 4 4 O 1.42900 * 109.47389 * 239.99623 * 2 1 3 5 5 C 1.53000 * 109.46779 * 119.99712 * 2 1 3 6 6 C 1.53007 * 109.47115 * 185.00352 * 5 2 1 7 7 N 1.46497 * 109.47288 * 180.02562 * 6 5 2 8 8 S 1.65600 * 120.00013 * 164.99835 * 7 6 5 9 9 O 1.42102 * 104.27698 * 308.92509 * 8 7 6 10 10 O 1.42098 * 104.27776 * 181.06845 * 8 7 6 11 11 C 1.81397 * 104.45058 * 64.99886 * 8 7 6 12 12 C 1.52994 * 109.47260 * 182.04317 * 11 8 7 13 13 C 1.50704 * 115.54788 * 294.72794 * 12 11 8 14 14 H 1.07992 * 120.00056 * 95.19496 * 13 12 11 15 15 C 1.37877 * 119.99535 * 274.90964 * 13 12 11 16 16 N 1.31509 * 120.00667 * 6.48940 * 15 13 12 17 17 Si 1.86805 * 119.99723 * 186.48980 * 15 13 12 18 18 H 1.48497 * 109.47065 * 60.00129 * 17 15 13 19 19 H 1.48497 * 109.47091 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46854 * 299.99835 * 17 15 13 21 21 C 1.52996 * 117.50014 * 80.39729 * 12 11 8 22 22 C 1.52999 * 117.50003 * 149.05486 * 12 11 8 23 23 H 1.09003 * 109.47596 * 300.00269 * 1 2 3 24 24 H 1.09004 * 109.47030 * 60.00561 * 1 2 3 25 25 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 26 26 H 0.96696 * 113.99559 * 300.00102 * 4 2 1 27 27 H 1.08994 * 109.47322 * 64.99924 * 5 2 1 28 28 H 1.09007 * 109.47294 * 304.99800 * 5 2 1 29 29 H 1.08994 * 109.47375 * 59.99604 * 6 5 2 30 30 H 1.09007 * 109.46589 * 299.99879 * 6 5 2 31 31 H 0.97006 * 119.99739 * 344.99683 * 7 6 5 32 32 H 1.09002 * 109.47300 * 62.03612 * 11 8 7 33 33 H 1.09004 * 109.47294 * 302.04399 * 11 8 7 34 34 H 0.96999 * 120.00580 * 185.07068 * 16 15 13 35 35 H 1.09008 * 117.50120 * 215.00734 * 21 12 11 36 36 H 1.09001 * 117.49818 * 0.02562 * 21 12 11 37 37 H 1.08998 * 117.50095 * 359.97438 * 22 12 11 38 38 H 1.09005 * 117.49798 * 144.97409 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5648 -0.6132 1.3139 7 7 4.0531 -1.3043 2.5097 8 16 5.6607 -1.6749 2.6534 9 8 5.9774 -2.3384 1.4374 10 8 5.7550 -2.3480 3.9013 11 6 6.4910 -0.0642 2.7348 12 6 8.0042 -0.2741 2.8190 13 6 8.4977 -0.9517 4.0714 14 1 8.6619 -2.0190 4.0790 15 6 8.7451 -0.2079 5.2057 16 7 8.4309 1.0687 5.2366 17 14 9.5267 -1.0138 6.6988 18 1 10.8583 -1.5565 6.3281 19 1 9.6851 -0.0068 7.7786 20 1 8.6572 -2.1187 7.1768 21 6 8.7502 -0.5680 1.5160 22 6 8.9017 0.7959 2.1941 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.7210 -1.5952 -1.2327 27 1 1.7515 -1.7714 1.2057 28 1 1.6053 -0.2616 2.1371 29 1 3.8531 0.4370 1.3574 30 1 3.9994 -1.0728 0.4261 31 1 3.4347 -1.5447 3.2174 32 1 6.1495 0.4765 3.6175 33 1 6.2534 0.5127 1.8410 34 1 8.6712 1.6089 6.0055 35 1 9.5980 -1.2515 1.5645 36 1 8.1630 -0.6114 0.5986 37 1 8.4142 1.6491 1.7226 38 1 9.8490 1.0100 2.6890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594761004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = -115.556520 kcal Electronic energy + Delta-G solvation = -20302.241046 eV Core-core repulsion = 17079.222655 eV Total energy + Delta-G solvation = -3223.018392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.28950 -36.73481 -36.22106 -35.24884 -34.99169 -32.01873 -31.80925 -28.54897 -28.14326 -25.43275 -23.33642 -21.70875 -21.19522 -19.69408 -18.62631 -17.06198 -16.55928 -16.35202 -16.14384 -15.76528 -15.02265 -14.68655 -14.42930 -14.16742 -13.93851 -13.77572 -13.08648 -12.96650 -12.32048 -12.12214 -11.87247 -11.82581 -11.52183 -11.27583 -11.24387 -11.11534 -11.02035 -11.00909 -10.88029 -10.58458 -10.44133 -10.16760 -10.09206 -9.71407 -9.19782 -8.92329 -8.52401 -8.08056 -6.12481 -4.22532 1.11608 3.34325 3.36358 3.43409 3.45719 4.13788 4.39942 4.50129 4.58974 4.68747 4.88009 5.00954 5.08938 5.13628 5.17290 5.23604 5.39100 5.53719 5.62260 5.67626 5.77202 5.81056 6.00145 6.00482 6.18966 6.28725 6.40600 6.63242 6.73773 7.00430 7.24994 7.30189 7.40996 7.44394 7.82310 8.22001 8.83417 9.48854 10.95932 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.004716 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.117809 B = 5935.403514 C = 6159.634639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.102 0.898 4 O -0.562 6.562 5 C -0.159 4.159 6 C 0.117 3.883 7 N -1.135 6.135 8 S 2.607 3.393 9 O -0.975 6.975 10 O -0.950 6.950 11 C -0.553 4.553 12 C 0.041 3.959 13 C -0.511 4.511 14 H 0.068 0.932 15 C 0.081 3.919 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.210 4.210 22 C -0.140 4.140 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.375 0.625 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.410 0.590 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.263 0.737 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 0.280 -7.886 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.041 3.959 3 H 0.120 0.880 4 O -0.367 6.367 5 C -0.198 4.198 6 C -0.009 4.009 7 N -0.891 5.891 8 S 2.704 3.296 9 O -0.965 6.965 10 O -0.941 6.941 11 C -0.686 4.686 12 C 0.039 3.961 13 C -0.549 4.549 14 H 0.086 0.914 15 C -0.124 4.124 16 N -0.511 5.511 17 Si 0.716 3.284 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.247 4.247 22 C -0.179 4.179 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.223 0.777 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.242 0.758 32 H 0.152 0.848 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.452 0.166 -7.972 15.637 hybrid contribution -0.250 -0.035 1.379 1.402 sum -13.702 0.131 -6.593 15.206 Atomic orbital electron populations 1.22501 0.96346 1.02579 1.02812 1.21904 0.92793 0.97004 0.84162 0.87999 1.86613 1.77211 1.29162 1.43732 1.22526 0.95778 1.02097 0.99383 1.21191 0.94818 0.96806 0.88094 1.56004 1.28524 1.76377 1.28232 1.05111 0.72408 0.78027 0.74030 1.93494 1.83112 1.72279 1.47601 1.93555 1.84364 1.72051 1.44086 1.29974 1.09928 1.19864 1.08876 1.18295 0.84879 1.00787 0.92138 1.20509 1.46355 0.94391 0.93598 0.91369 1.24934 0.94369 0.94939 0.98160 1.69999 1.44046 1.06205 1.30895 0.86672 0.80109 0.79535 0.82035 1.19964 1.21177 1.19419 1.23218 1.04273 1.00823 0.96382 1.22534 1.02233 0.90404 1.02725 0.91488 0.91746 0.92295 0.77730 0.90780 0.90267 0.92120 0.89774 0.75782 0.84798 0.88442 0.92762 0.89511 0.90603 0.91549 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.53 37.16 0.35 -0.84 16 2 C 0.10 0.84 3.59 -26.73 -0.10 0.75 16 3 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 4 O -0.56 -5.51 12.88 -35.23 -0.45 -5.96 16 5 C -0.16 -1.43 5.03 -26.73 -0.13 -1.56 16 6 C 0.12 1.46 6.03 -4.04 -0.02 1.44 16 7 N -1.13 -16.78 5.89 -10.61 -0.06 -16.84 16 8 S 2.61 52.89 5.24 -107.50 -0.56 52.33 16 9 O -0.97 -21.56 17.50 -57.54 -1.01 -22.57 16 10 O -0.95 -22.83 17.53 -57.54 -1.01 -23.84 16 11 C -0.55 -11.69 5.93 37.15 0.22 -11.47 16 12 C 0.04 1.02 1.33 -155.66 -0.21 0.81 16 13 C -0.51 -14.11 8.01 -34.44 -0.28 -14.39 16 14 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 15 C 0.08 2.21 5.39 -17.82 -0.10 2.12 16 16 N -0.88 -24.24 12.93 55.43 0.72 -23.53 16 17 Si 0.89 21.48 29.55 -169.99 -5.02 16.46 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.21 -4.65 9.96 -26.70 -0.27 -4.92 16 22 C -0.14 -3.21 9.44 -26.70 -0.25 -3.46 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.38 2.45 9.04 45.56 0.41 2.86 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.15 7.37 -51.92 -0.38 0.77 16 31 H 0.41 5.23 8.62 -34.47 -0.30 4.93 16 32 H 0.13 2.94 8.14 -51.92 -0.42 2.52 16 33 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 34 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 35 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -33.90 334.02 -8.45 -42.35 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.31 Total: 8.10 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: -0.78 Total: -31.53 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.65 Total: -40.37 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.47 Total: -52.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.56 Total: 52.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.90 -8.45 -42.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594761004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.209 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds