Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46843 * 2 1 4 4 O 1.42900 * 109.47389 * 239.99623 * 2 1 3 5 5 C 1.53000 * 109.46779 * 119.99712 * 2 1 3 6 6 C 1.53007 * 109.47115 * 185.00352 * 5 2 1 7 7 N 1.46497 * 109.47288 * 180.02562 * 6 5 2 8 8 S 1.65600 * 120.00013 * 164.99835 * 7 6 5 9 9 O 1.42102 * 104.27698 * 308.92509 * 8 7 6 10 10 O 1.42098 * 104.27776 * 181.06845 * 8 7 6 11 11 C 1.81397 * 104.45058 * 64.99886 * 8 7 6 12 12 C 1.52994 * 109.47260 * 182.04317 * 11 8 7 13 13 C 1.50704 * 115.54788 * 294.72794 * 12 11 8 14 14 H 1.07992 * 120.00056 * 95.19496 * 13 12 11 15 15 C 1.37877 * 119.99535 * 274.90964 * 13 12 11 16 16 N 1.31509 * 120.00667 * 6.48940 * 15 13 12 17 17 Si 1.86805 * 119.99723 * 186.48980 * 15 13 12 18 18 H 1.48497 * 109.47065 * 60.00129 * 17 15 13 19 19 H 1.48497 * 109.47091 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46854 * 299.99835 * 17 15 13 21 21 C 1.52996 * 117.50014 * 80.39729 * 12 11 8 22 22 C 1.52999 * 117.50003 * 149.05486 * 12 11 8 23 23 H 1.09003 * 109.47596 * 300.00269 * 1 2 3 24 24 H 1.09004 * 109.47030 * 60.00561 * 1 2 3 25 25 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 26 26 H 0.96696 * 113.99559 * 300.00102 * 4 2 1 27 27 H 1.08994 * 109.47322 * 64.99924 * 5 2 1 28 28 H 1.09007 * 109.47294 * 304.99800 * 5 2 1 29 29 H 1.08994 * 109.47375 * 59.99604 * 6 5 2 30 30 H 1.09007 * 109.46589 * 299.99879 * 6 5 2 31 31 H 0.97006 * 119.99739 * 344.99683 * 7 6 5 32 32 H 1.09002 * 109.47300 * 62.03612 * 11 8 7 33 33 H 1.09004 * 109.47294 * 302.04399 * 11 8 7 34 34 H 0.96999 * 120.00580 * 185.07068 * 16 15 13 35 35 H 1.09008 * 117.50120 * 215.00734 * 21 12 11 36 36 H 1.09001 * 117.49818 * 0.02562 * 21 12 11 37 37 H 1.08998 * 117.50095 * 359.97438 * 22 12 11 38 38 H 1.09005 * 117.49798 * 144.97409 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5648 -0.6132 1.3139 7 7 4.0531 -1.3043 2.5097 8 16 5.6607 -1.6749 2.6534 9 8 5.9774 -2.3384 1.4374 10 8 5.7550 -2.3480 3.9013 11 6 6.4910 -0.0642 2.7348 12 6 8.0042 -0.2741 2.8190 13 6 8.4977 -0.9517 4.0714 14 1 8.6619 -2.0190 4.0790 15 6 8.7451 -0.2079 5.2057 16 7 8.4309 1.0687 5.2366 17 14 9.5267 -1.0138 6.6988 18 1 10.8583 -1.5565 6.3281 19 1 9.6851 -0.0068 7.7786 20 1 8.6572 -2.1187 7.1768 21 6 8.7502 -0.5680 1.5160 22 6 8.9017 0.7959 2.1941 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.7210 -1.5952 -1.2327 27 1 1.7515 -1.7714 1.2057 28 1 1.6053 -0.2616 2.1371 29 1 3.8531 0.4370 1.3574 30 1 3.9994 -1.0728 0.4261 31 1 3.4347 -1.5447 3.2174 32 1 6.1495 0.4765 3.6175 33 1 6.2534 0.5127 1.8410 34 1 8.6712 1.6089 6.0055 35 1 9.5980 -1.2515 1.5645 36 1 8.1630 -0.6114 0.5986 37 1 8.4142 1.6491 1.7226 38 1 9.8490 1.0100 2.6890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594761004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = -142.637073 kcal Electronic energy + Delta-G solvation = -20303.415347 eV Core-core repulsion = 17079.222655 eV Total energy + Delta-G solvation = -3224.192692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.00693 -38.56550 -37.92446 -36.80523 -36.22905 -34.07716 -32.55766 -29.85838 -29.33532 -27.48250 -24.19466 -22.99157 -22.42945 -21.48520 -20.20704 -18.49817 -18.33168 -17.36883 -17.21220 -16.81352 -16.67080 -16.52748 -15.80975 -15.58983 -15.19526 -14.81898 -14.69261 -13.75397 -13.74297 -13.59560 -13.20544 -13.14884 -12.93522 -12.89357 -12.84747 -12.83322 -12.44647 -12.40833 -12.25980 -12.16015 -11.89796 -11.63293 -11.55851 -10.88675 -10.85729 -10.55391 -10.42765 -9.86792 -8.19499 -6.33662 -0.48611 1.39491 1.42464 1.49137 2.04455 2.40924 2.96623 3.08590 3.35781 3.45405 3.57173 3.86632 3.90013 4.05460 4.17375 4.29841 4.39176 4.48590 4.51154 4.59138 4.65662 4.80394 4.84546 4.91854 4.97518 4.98205 5.21217 5.24335 5.29622 5.37040 5.46618 5.58987 5.72061 6.17674 6.22709 6.72818 6.91795 7.38846 8.88205 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.004716 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.117809 B = 5935.403514 C = 6159.634639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 H 0.101 0.899 4 O -0.583 6.583 5 C -0.152 4.152 6 C 0.105 3.895 7 N -1.118 6.118 8 S 2.625 3.375 9 O -0.995 6.995 10 O -0.995 6.995 11 C -0.552 4.552 12 C 0.008 3.992 13 C -0.531 4.531 14 H 0.049 0.951 15 C 0.041 3.959 16 N -0.893 5.893 17 Si 0.935 3.065 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.198 4.198 22 C -0.137 4.137 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.387 0.613 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.421 0.579 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.532 0.829 -8.460 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.041 3.959 3 H 0.119 0.881 4 O -0.391 6.391 5 C -0.191 4.191 6 C -0.020 4.020 7 N -0.879 5.879 8 S 2.722 3.278 9 O -0.985 6.985 10 O -0.985 6.985 11 C -0.685 4.685 12 C 0.005 3.995 13 C -0.568 4.568 14 H 0.067 0.933 15 C -0.161 4.161 16 N -0.529 5.529 17 Si 0.760 3.240 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.203 1.203 21 C -0.235 4.235 22 C -0.176 4.176 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.237 0.763 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.257 0.743 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.860 0.709 -8.544 17.156 hybrid contribution 0.141 -0.212 1.489 1.511 sum -14.719 0.497 -7.055 16.330 Atomic orbital electron populations 1.22438 0.94756 1.03260 1.03220 1.21954 0.93975 0.96672 0.83278 0.88143 1.86578 1.77760 1.30340 1.44419 1.22513 0.93051 1.02985 1.00539 1.21500 0.97240 0.97028 0.86249 1.55494 1.26422 1.76439 1.29540 1.04261 0.73442 0.77430 0.72656 1.93462 1.84193 1.72818 1.48054 1.93490 1.85667 1.73318 1.46015 1.29865 1.07826 1.20801 1.09985 1.18444 0.86931 1.02036 0.92041 1.20696 1.46896 0.93776 0.95441 0.93324 1.25508 0.94935 0.95546 1.00149 1.70043 1.44590 1.06762 1.31541 0.85970 0.79426 0.78787 0.79824 1.19330 1.19869 1.20260 1.23260 1.03868 1.00114 0.96275 1.22494 1.01234 0.91292 1.02548 0.90532 0.91883 0.91513 0.76335 0.90092 0.88625 0.90760 0.90988 0.74326 0.85843 0.85135 0.92589 0.89875 0.88332 0.89394 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.53 71.98 0.69 -1.16 16 2 C 0.10 1.44 3.59 30.59 0.11 1.55 16 3 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 4 O -0.58 -10.37 12.88 -148.98 -1.92 -12.29 16 5 C -0.15 -2.31 5.03 30.60 0.15 -2.16 16 6 C 0.11 2.38 6.03 86.38 0.52 2.90 16 7 N -1.12 -31.18 5.89 -187.48 -1.10 -32.29 16 8 S 2.63 104.92 5.24 -56.49 -0.30 104.62 16 9 O -1.00 -43.29 17.50 -127.65 -2.23 -45.52 16 10 O -0.99 -48.24 17.53 -127.65 -2.24 -50.48 16 11 C -0.55 -22.74 5.93 71.98 0.43 -22.31 16 12 C 0.01 0.37 1.33 -52.93 -0.07 0.30 16 13 C -0.53 -29.65 8.01 25.60 0.21 -29.44 16 14 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 15 C 0.04 2.27 5.39 84.66 0.46 2.73 16 16 N -0.89 -49.39 12.93 21.45 0.28 -49.11 16 17 Si 0.93 44.18 29.55 68.60 2.03 46.21 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 C -0.20 -8.58 9.96 30.61 0.30 -8.27 16 22 C -0.14 -6.15 9.44 30.62 0.29 -5.86 16 23 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.39 4.38 9.04 -74.06 -0.67 3.71 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.83 7.37 -2.38 -0.02 1.82 16 31 H 0.42 9.99 8.62 -96.74 -0.83 9.15 16 32 H 0.12 5.35 8.14 -2.39 -0.02 5.33 16 33 H 0.13 4.36 8.09 -2.39 -0.02 4.34 16 34 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 35 H 0.08 3.61 8.14 -2.38 -0.02 3.59 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.77 16 37 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -72.14 334.02 -2.85 -74.99 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.45 Total: 25.59 kcal Atomic # 6 Polarization: -64.81 SS G_CDS: 3.08 Total: -61.73 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -0.83 Total: -81.40 kcal Atomic # 8 Polarization: -101.90 SS G_CDS: -6.39 Total: -108.29 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 104.92 SS G_CDS: -0.30 Total: 104.62 kcal Total: -72.14 -2.85 -74.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594761004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.646 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds