Wall clock time and date at job start Mon Mar 30 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46587 * 2 1 4 4 O 1.42900 * 109.46980 * 240.00601 * 2 1 3 5 5 C 1.52996 * 109.47617 * 119.99929 * 2 1 3 6 6 H 1.08996 * 109.99941 * 302.78664 * 5 2 1 7 7 C 1.54327 * 109.88086 * 63.88351 * 5 2 1 8 8 C 1.55153 * 102.94461 * 141.61049 * 7 5 2 9 9 C 1.54909 * 101.58083 * 324.49775 * 8 7 5 10 10 N 1.47023 * 109.88425 * 181.68902 * 5 2 1 11 11 S 1.65597 * 125.64690 * 61.66468 * 10 5 2 12 12 O 1.42100 * 104.27792 * 26.07181 * 11 10 5 13 13 O 1.42100 * 104.27738 * 153.93418 * 11 10 5 14 14 C 1.81408 * 104.44866 * 270.00046 * 11 10 5 15 15 C 1.52999 * 109.46887 * 180.02562 * 14 11 10 16 16 C 1.50696 * 109.46900 * 179.97438 * 15 14 11 17 17 H 1.08001 * 120.00344 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99925 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47207 * 120.00284 * 20 18 16 23 23 H 1.48502 * 109.46833 * 240.00289 * 20 18 16 24 24 H 1.09005 * 109.47138 * 299.99458 * 1 2 3 25 25 H 1.08991 * 109.47516 * 59.99814 * 1 2 3 26 26 H 1.09004 * 109.46587 * 180.02562 * 1 2 3 27 27 H 0.96700 * 113.99845 * 306.48647 * 4 2 1 28 28 H 1.09004 * 110.72024 * 259.97560 * 7 5 2 29 29 H 1.09003 * 110.71944 * 23.24472 * 7 5 2 30 30 H 1.08998 * 111.00367 * 206.42396 * 8 7 5 31 31 H 1.09006 * 111.00399 * 82.56817 * 8 7 5 32 32 H 1.09006 * 110.36800 * 278.17231 * 9 8 7 33 33 H 1.08998 * 110.37332 * 155.84871 * 9 8 7 34 34 H 1.08998 * 109.46954 * 300.00171 * 14 11 10 35 35 H 1.08997 * 109.46873 * 60.00207 * 14 11 10 36 36 H 1.08998 * 109.47393 * 299.99815 * 15 14 11 37 37 H 1.09004 * 109.47266 * 59.99983 * 15 14 11 38 38 H 0.97003 * 120.00347 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7212 1.2492 6 1 1.6415 -0.2437 2.1442 7 6 1.6128 -2.2036 1.2106 8 6 2.8503 -2.9373 1.7915 9 6 4.0118 -2.0767 1.2347 10 7 3.5097 -0.6912 1.2788 11 16 4.4460 0.6728 1.3504 12 8 3.6124 1.6375 1.9779 13 8 5.6525 0.2380 1.9624 14 6 4.7358 1.1144 -0.3851 15 6 5.6006 2.3747 -0.4530 16 6 5.8419 2.7413 -1.8946 17 1 5.4210 2.1356 -2.6836 18 6 6.6002 3.8498 -2.2065 19 7 7.1132 4.5870 -1.2459 20 14 6.8987 4.3046 -3.9936 21 1 6.2185 3.3217 -4.8748 22 1 6.3580 5.6625 -4.2558 23 1 8.3576 4.2905 -4.2708 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6421 -1.5616 -1.2846 28 1 0.7368 -2.3689 1.8379 29 1 1.4207 -2.5231 0.1863 30 1 2.9086 -3.9600 1.4192 31 1 2.8389 -2.9199 2.8814 32 1 4.2396 -2.3651 0.2085 33 1 4.8959 -2.1799 1.8637 34 1 5.2489 0.2946 -0.8878 35 1 3.7811 1.3015 -0.8767 36 1 5.0879 3.1948 0.0498 37 1 6.5553 2.1873 0.0386 38 1 7.6469 5.3667 -1.4653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594858376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:59 Heat of formation + Delta-G solvation = -132.605812 kcal Electronic energy + Delta-G solvation = -21003.557972 eV Core-core repulsion = 17779.800267 eV Total energy + Delta-G solvation = -3223.757704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55862 -36.65639 -36.20134 -35.39115 -33.81595 -31.55113 -31.11125 -30.97407 -27.96696 -25.52659 -23.71553 -22.24290 -21.42614 -20.43759 -18.66032 -17.62122 -16.91324 -16.40457 -16.02068 -15.54178 -15.28485 -14.92993 -14.51366 -14.18129 -13.74455 -13.40075 -13.30553 -12.90919 -12.46738 -12.39141 -12.11719 -11.95350 -11.67081 -11.60118 -11.52806 -11.37710 -11.23358 -11.04855 -10.95385 -10.90037 -10.72683 -10.41509 -10.29701 -10.24000 -9.67441 -9.21039 -8.61486 -8.45595 -6.07370 -4.12022 0.80946 3.07183 3.28917 3.35917 3.40465 4.20513 4.29345 4.32365 4.39519 4.43991 4.61202 4.79707 4.91153 4.99103 5.08822 5.23418 5.27899 5.36341 5.52625 5.58039 5.62346 5.68566 5.73877 5.79371 5.85215 5.94422 6.01939 6.05165 6.25353 6.56304 6.62732 7.36646 7.41986 7.58505 7.87102 8.24400 8.92060 9.52347 11.03879 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.005539 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.795664 B = 5053.703989 C = 5576.766636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 H 0.105 0.895 4 O -0.547 6.547 5 C 0.122 3.878 6 H 0.086 0.914 7 C -0.124 4.124 8 C -0.128 4.128 9 C 0.116 3.884 10 N -1.007 6.007 11 S 2.601 3.399 12 O -0.966 6.966 13 O -0.965 6.965 14 C -0.582 4.582 15 C 0.027 3.973 16 C -0.515 4.515 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.368 0.632 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -15.795 3.806 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.352 6.352 5 C 0.015 3.985 6 H 0.104 0.896 7 C -0.163 4.163 8 C -0.166 4.166 9 C -0.009 4.009 10 N -0.842 5.842 11 S 2.702 3.298 12 O -0.957 6.957 13 O -0.956 6.956 14 C -0.716 4.716 15 C -0.012 4.012 16 C -0.554 4.554 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.531 5.531 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.215 0.785 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.719 -14.615 4.626 19.919 hybrid contribution -0.214 -0.243 -1.502 1.536 sum -12.933 -14.857 3.124 19.944 Atomic orbital electron populations 1.22438 0.95373 1.02610 1.03480 1.22504 0.93881 0.97279 0.84947 0.87733 1.86719 1.71757 1.32718 1.44044 1.21990 0.80677 0.97240 0.98599 0.89558 1.22648 0.98499 0.93545 1.01617 1.22740 0.94173 0.98644 1.01090 1.21982 0.97423 0.80399 1.01095 1.58812 1.14790 1.20099 1.90538 1.05385 0.73059 0.72089 0.79272 1.93518 1.67762 1.59788 1.74618 1.93522 1.46236 1.80645 1.75195 1.30487 1.10632 1.10393 1.20043 1.18981 0.93802 0.88336 1.00085 1.21057 1.32440 1.10941 0.91002 0.91905 1.25071 0.95539 0.96170 0.97777 1.69968 1.34310 1.16915 1.31891 0.86419 0.78007 0.78393 0.84513 1.19611 1.20833 1.20835 0.91124 0.91273 0.92020 0.78461 0.90193 0.90778 0.90129 0.90697 0.91477 0.90018 0.86234 0.85810 0.95021 0.95019 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.29 37.16 0.35 -1.23 16 2 C 0.07 0.88 3.06 -26.73 -0.08 0.80 16 3 H 0.10 1.52 6.75 -51.93 -0.35 1.17 16 4 O -0.55 -6.49 12.96 -35.23 -0.46 -6.95 16 5 C 0.12 1.41 2.62 -66.95 -0.18 1.24 16 6 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.12 -0.95 5.36 -24.90 -0.13 -1.09 16 8 C -0.13 -1.04 7.08 -24.58 -0.17 -1.22 16 9 C 0.12 1.35 7.07 -2.53 -0.02 1.33 16 10 N -1.01 -14.52 3.23 -104.42 -0.34 -14.86 16 11 S 2.60 50.52 5.17 -107.50 -0.56 49.96 16 12 O -0.97 -20.86 17.48 -57.54 -1.01 -21.87 16 13 O -0.97 -21.28 17.28 -57.54 -0.99 -22.28 16 14 C -0.58 -12.12 6.12 37.16 0.23 -11.89 16 15 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 16 C -0.51 -14.74 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.39 7.31 -51.93 -0.38 0.01 16 27 H 0.37 2.84 7.01 45.56 0.32 3.16 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.44 5.89 -51.93 -0.31 0.14 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 34 H 0.12 2.31 8.14 -51.92 -0.42 1.89 16 35 H 0.12 2.44 6.57 -51.93 -0.34 2.10 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -35.84 319.08 -8.61 -44.45 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.22 Total: 1.38 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -0.56 Total: -24.98 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.40 Total: -41.25 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.46 Total: -51.10 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 50.52 SS G_CDS: -0.56 Total: 49.96 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.84 -8.61 -44.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594858376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.152 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds