Wall clock time and date at job start Mon Mar 30 2020 01:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47049 * 2 1 4 4 C 1.46899 * 111.00032 * 197.47796 * 3 2 1 5 5 C 1.50706 * 109.47084 * 72.69833 * 4 3 2 6 6 H 1.07998 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00353 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46856 * 59.99661 * 9 7 5 11 11 H 1.48495 * 109.47421 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46970 * 299.99960 * 9 7 5 13 13 C 1.46902 * 111.00087 * 73.52998 * 3 2 1 14 14 H 1.08998 * 109.64533 * 293.90114 * 13 3 2 15 15 C 1.55095 * 109.65632 * 173.45650 * 13 3 2 16 16 S 1.83838 * 101.18752 * 198.41012 * 15 13 3 17 17 O 1.42104 * 109.61476 * 148.94869 * 16 15 13 18 18 O 1.42104 * 109.61407 * 282.71551 * 16 15 13 19 19 C 1.83234 * 95.32509 * 35.92273 * 16 15 13 20 20 C 1.52969 * 109.55089 * 54.27656 * 13 3 2 21 21 H 1.09002 * 108.93921 * 270.45017 * 20 13 3 22 22 O 1.42900 * 108.93201 * 28.97741 * 20 13 3 23 23 C 1.42895 * 114.00371 * 204.49568 * 22 20 13 24 24 H 1.09002 * 109.47336 * 63.89603 * 1 2 3 25 25 H 1.09004 * 109.47527 * 183.89512 * 1 2 3 26 26 H 1.09000 * 109.46857 * 303.89359 * 1 2 3 27 27 H 1.09000 * 109.47002 * 240.00653 * 2 1 3 28 28 H 1.08994 * 109.47448 * 120.00526 * 2 1 3 29 29 H 1.09002 * 109.47233 * 192.69446 * 4 3 2 30 30 H 1.08997 * 109.47480 * 312.69882 * 4 3 2 31 31 H 0.97001 * 119.99569 * 180.02562 * 8 7 5 32 32 H 1.09002 * 111.07476 * 316.38604 * 15 13 3 33 33 H 1.08996 * 111.08007 * 80.42820 * 15 13 3 34 34 H 1.09008 * 110.26792 * 98.66285 * 19 16 15 35 35 H 1.08993 * 110.27491 * 220.63493 * 19 16 15 36 36 H 1.08997 * 109.47059 * 60.00229 * 23 22 20 37 37 H 1.09003 * 109.47611 * 179.97438 * 23 22 20 38 38 H 1.08998 * 109.47205 * 299.99932 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4284 1.4453 -0.4119 5 6 3.5307 1.1817 -1.8922 6 1 2.6384 0.9882 -2.4691 7 6 4.7634 1.1864 -2.5097 8 7 5.8500 1.4215 -1.8071 9 14 4.8902 0.8589 -4.3444 10 1 4.1138 1.8853 -5.0853 11 1 6.3142 0.9199 -4.7609 12 1 4.3432 -0.4884 -4.6456 13 6 1.8285 2.0110 1.3152 14 1 0.7630 2.1151 1.5201 15 6 2.5017 3.4081 1.3307 16 16 2.6400 3.7173 3.1376 17 8 3.7882 4.5127 3.3990 18 8 1.3736 4.1036 3.6538 19 6 2.9854 1.9736 3.5826 20 6 2.4775 1.1427 2.3945 21 1 1.7450 0.4206 2.7555 22 8 3.5776 0.4342 1.8202 23 6 3.9135 -0.7731 2.5068 24 1 -0.3634 0.4522 -0.9228 25 1 -0.3634 -1.0253 0.0698 26 1 -0.3633 0.5731 0.8530 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8297 2.4343 -0.1905 30 1 3.9985 0.6918 0.1316 31 1 6.7172 1.4251 -2.2416 32 1 3.4853 3.3745 0.8623 33 1 1.8671 4.1544 0.8527 34 1 4.0565 1.8235 3.7179 35 1 2.4488 1.7024 4.4917 36 1 3.0568 -1.4470 2.4971 37 1 4.7571 -1.2515 2.0091 38 1 4.1826 -0.5422 3.5374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595331668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:36 Heat of formation + Delta-G solvation = -79.402267 kcal Electronic energy + Delta-G solvation = -21595.273782 eV Core-core repulsion = 18373.823156 eV Total energy + Delta-G solvation = -3221.450626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.58038 -36.90489 -36.10995 -35.86916 -33.27100 -32.49032 -30.34435 -28.68098 -26.89795 -26.30044 -24.18165 -22.28275 -21.75583 -19.40343 -18.70950 -17.27508 -16.75062 -16.28064 -15.81051 -15.68352 -15.22508 -14.81015 -14.62849 -14.23639 -14.00554 -13.29264 -13.17601 -12.84758 -12.64594 -12.12483 -12.04683 -12.02282 -11.89964 -11.67488 -11.41479 -11.26957 -11.01010 -10.93829 -10.72841 -10.68859 -10.29621 -10.16907 -10.03730 -9.62556 -9.53990 -9.14484 -8.36270 -7.17405 -5.98381 -3.97796 0.20787 2.60874 3.33576 3.38594 3.41096 3.70530 3.78126 4.16419 4.41130 4.53283 4.72283 4.78198 4.89237 5.15065 5.22667 5.36671 5.39372 5.50051 5.55052 5.64839 5.74223 5.87070 5.91772 5.95369 6.01472 6.21433 6.29395 6.65549 6.74796 7.20939 7.32393 7.72335 7.82284 8.11024 8.25407 8.56094 9.10436 9.63730 11.11176 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.006671 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.281606 B = 4196.511780 C = 4562.100113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.505 5.505 4 C 0.175 3.825 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.087 3.913 14 H 0.104 0.896 15 C -0.569 4.569 16 S 2.377 3.623 17 O -0.941 6.941 18 O -0.943 6.943 19 C -0.617 4.617 20 C 0.060 3.940 21 H 0.076 0.924 22 O -0.333 6.333 23 C 0.016 3.984 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.260 0.740 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 -2.684 10.069 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.229 5.229 4 C 0.051 3.949 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.025 4.025 14 H 0.122 0.878 15 C -0.700 4.700 16 S 2.561 3.439 17 O -0.937 6.937 18 O -0.940 6.940 19 C -0.747 4.747 20 C -0.002 4.002 21 H 0.093 0.907 22 O -0.251 6.251 23 C -0.080 4.080 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.079 -1.500 10.108 12.431 hybrid contribution 0.661 -1.520 -0.529 1.740 sum -6.418 -3.021 9.579 11.920 Atomic orbital electron populations 1.21855 0.96936 1.00111 1.01805 1.22085 0.93661 0.90200 1.01699 1.62395 1.25230 1.16391 1.18847 1.20373 0.81024 0.98072 0.95412 1.21180 0.92475 1.47427 0.93380 0.92264 1.24936 0.95816 0.95819 0.97970 1.69949 0.97987 1.49968 1.35641 0.86639 0.76736 0.78689 0.85751 1.20351 1.21485 1.20475 1.22416 0.98535 0.90604 0.90951 0.87783 1.30927 1.12902 1.04753 1.21380 1.09352 0.75319 0.78343 0.80891 1.93601 1.50414 1.65734 1.83997 1.93594 1.41429 1.80981 1.77999 1.30952 1.12072 1.24369 1.07321 1.23245 0.90252 0.95475 0.91204 0.90651 1.88757 1.49596 1.36227 1.50546 1.22837 1.00605 0.87815 0.96739 0.92187 0.93455 0.93686 0.89747 0.94993 0.94805 0.93536 0.93004 0.81838 0.84094 0.83693 0.85070 0.94388 0.89324 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.05 37.16 0.37 -1.74 16 2 C 0.05 0.90 5.14 -3.83 -0.02 0.88 16 3 N -0.50 -9.73 4.47 -226.78 -1.01 -10.75 16 4 C 0.17 4.14 3.74 -4.97 -0.02 4.12 16 5 C -0.51 -13.53 8.39 -34.44 -0.29 -13.82 16 6 H 0.06 1.59 7.70 -52.49 -0.40 1.18 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.09 1.35 2.53 -66.62 -0.17 1.18 16 14 H 0.10 1.39 6.95 -51.93 -0.36 1.03 16 15 C -0.57 -8.63 6.66 38.27 0.25 -8.37 16 16 S 2.38 32.85 6.05 -107.50 -0.65 32.20 16 17 O -0.94 -16.29 18.16 -57.69 -1.05 -17.34 16 18 O -0.94 -14.75 18.16 -57.69 -1.05 -15.80 16 19 C -0.62 -7.30 6.72 37.48 0.25 -7.04 16 20 C 0.06 0.83 1.97 -26.43 -0.05 0.78 16 21 H 0.08 0.90 7.47 -51.93 -0.39 0.51 16 22 O -0.33 -5.56 4.68 -35.23 -0.16 -5.72 16 23 C 0.02 0.22 10.36 101.05 1.05 1.26 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.57 6.82 -51.93 -0.35 0.22 16 27 H 0.08 1.67 7.11 -51.93 -0.37 1.30 16 28 H 0.03 0.52 4.57 -51.93 -0.24 0.28 16 29 H 0.03 0.85 4.99 -51.93 -0.26 0.59 16 30 H 0.05 1.18 5.08 -52.49 -0.27 0.91 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.16 2.88 5.30 -51.93 -0.28 2.61 16 33 H 0.14 1.89 8.14 -51.93 -0.42 1.46 16 34 H 0.14 1.70 7.83 -51.92 -0.41 1.29 16 35 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.04 0.45 7.61 -51.93 -0.40 0.05 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.04 0.40 7.82 -51.93 -0.41 0.00 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -33.49 304.94 -7.70 -41.19 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.37 Total: 1.66 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 1.28 Total: -21.32 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.28 Total: -35.69 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -2.26 Total: -38.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 32.85 SS G_CDS: -0.65 Total: 32.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.49 -7.70 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.211 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds