Wall clock time and date at job start Mon Mar 30 2020 01:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47049 * 2 1 4 4 C 1.46899 * 111.00032 * 197.47796 * 3 2 1 5 5 C 1.50706 * 109.47084 * 72.69833 * 4 3 2 6 6 H 1.07998 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00353 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46856 * 59.99661 * 9 7 5 11 11 H 1.48495 * 109.47421 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46970 * 299.99960 * 9 7 5 13 13 C 1.46902 * 111.00087 * 73.52998 * 3 2 1 14 14 H 1.08998 * 109.64533 * 293.90114 * 13 3 2 15 15 C 1.55095 * 109.65632 * 173.45650 * 13 3 2 16 16 S 1.83838 * 101.18752 * 198.41012 * 15 13 3 17 17 O 1.42104 * 109.61476 * 148.94869 * 16 15 13 18 18 O 1.42104 * 109.61407 * 282.71551 * 16 15 13 19 19 C 1.83234 * 95.32509 * 35.92273 * 16 15 13 20 20 C 1.52969 * 109.55089 * 54.27656 * 13 3 2 21 21 H 1.09002 * 108.93921 * 270.45017 * 20 13 3 22 22 O 1.42900 * 108.93201 * 28.97741 * 20 13 3 23 23 C 1.42895 * 114.00371 * 204.49568 * 22 20 13 24 24 H 1.09002 * 109.47336 * 63.89603 * 1 2 3 25 25 H 1.09004 * 109.47527 * 183.89512 * 1 2 3 26 26 H 1.09000 * 109.46857 * 303.89359 * 1 2 3 27 27 H 1.09000 * 109.47002 * 240.00653 * 2 1 3 28 28 H 1.08994 * 109.47448 * 120.00526 * 2 1 3 29 29 H 1.09002 * 109.47233 * 192.69446 * 4 3 2 30 30 H 1.08997 * 109.47480 * 312.69882 * 4 3 2 31 31 H 0.97001 * 119.99569 * 180.02562 * 8 7 5 32 32 H 1.09002 * 111.07476 * 316.38604 * 15 13 3 33 33 H 1.08996 * 111.08007 * 80.42820 * 15 13 3 34 34 H 1.09008 * 110.26792 * 98.66285 * 19 16 15 35 35 H 1.08993 * 110.27491 * 220.63493 * 19 16 15 36 36 H 1.08997 * 109.47059 * 60.00229 * 23 22 20 37 37 H 1.09003 * 109.47611 * 179.97438 * 23 22 20 38 38 H 1.08998 * 109.47205 * 299.99932 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4284 1.4453 -0.4119 5 6 3.5307 1.1817 -1.8922 6 1 2.6384 0.9882 -2.4691 7 6 4.7634 1.1864 -2.5097 8 7 5.8500 1.4215 -1.8071 9 14 4.8902 0.8589 -4.3444 10 1 4.1138 1.8853 -5.0853 11 1 6.3142 0.9199 -4.7609 12 1 4.3432 -0.4884 -4.6456 13 6 1.8285 2.0110 1.3152 14 1 0.7630 2.1151 1.5201 15 6 2.5017 3.4081 1.3307 16 16 2.6400 3.7173 3.1376 17 8 3.7882 4.5127 3.3990 18 8 1.3736 4.1036 3.6538 19 6 2.9854 1.9736 3.5826 20 6 2.4775 1.1427 2.3945 21 1 1.7450 0.4206 2.7555 22 8 3.5776 0.4342 1.8202 23 6 3.9135 -0.7731 2.5068 24 1 -0.3634 0.4522 -0.9228 25 1 -0.3634 -1.0253 0.0698 26 1 -0.3633 0.5731 0.8530 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8297 2.4343 -0.1905 30 1 3.9985 0.6918 0.1316 31 1 6.7172 1.4251 -2.2416 32 1 3.4853 3.3745 0.8623 33 1 1.8671 4.1544 0.8527 34 1 4.0565 1.8235 3.7179 35 1 2.4488 1.7024 4.4917 36 1 3.0568 -1.4470 2.4971 37 1 4.7571 -1.2515 2.0091 38 1 4.1826 -0.5422 3.5374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595331668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:35 Heat of formation + Delta-G solvation = -106.208445 kcal Electronic energy + Delta-G solvation = -21596.436185 eV Core-core repulsion = 18373.823156 eV Total energy + Delta-G solvation = -3222.613029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82031 -38.13660 -37.42331 -37.10770 -34.88506 -34.08387 -31.66975 -30.03550 -28.31579 -27.55258 -25.63066 -23.73393 -23.14766 -20.71694 -19.86365 -18.81117 -17.93242 -17.80297 -17.02994 -16.94084 -16.58566 -16.38917 -15.87190 -15.68100 -15.49377 -14.55032 -14.29744 -14.03810 -13.86595 -13.73288 -13.53799 -13.26569 -13.15214 -12.87880 -12.80415 -12.67571 -12.53019 -12.49247 -12.26831 -11.89806 -11.85734 -11.67119 -11.33279 -11.16719 -11.05948 -10.64285 -10.39684 -8.68961 -8.06397 -6.12347 -0.92262 1.42400 1.43947 1.49935 1.51527 2.45726 2.58888 2.69404 3.03463 3.25377 3.37240 3.55037 3.59620 3.83466 4.02322 4.10226 4.38781 4.40365 4.53300 4.57478 4.65408 4.69202 4.80748 4.86349 4.92086 4.97677 5.12184 5.32531 5.50508 5.56282 5.73685 5.95419 6.20091 6.31892 6.55444 6.79224 7.08560 7.53120 9.01233 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019409 B = 0.006671 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.281606 B = 4196.511780 C = 4562.100113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 N -0.518 5.518 4 C 0.186 3.814 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.078 3.922 14 H 0.134 0.866 15 C -0.581 4.581 16 S 2.406 3.594 17 O -0.979 6.979 18 O -0.956 6.956 19 C -0.595 4.595 20 C 0.055 3.945 21 H 0.109 0.891 22 O -0.371 6.371 23 C 0.013 3.987 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.014 0.986 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.133 0.867 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -3.744 11.478 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.241 5.241 4 C 0.061 3.939 5 C -0.555 4.555 6 H 0.069 0.931 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.034 4.034 14 H 0.151 0.849 15 C -0.710 4.710 16 S 2.592 3.408 17 O -0.976 6.976 18 O -0.953 6.953 19 C -0.727 4.727 20 C -0.006 4.006 21 H 0.126 0.874 22 O -0.290 6.290 23 C -0.083 4.083 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.804 -2.543 11.504 14.708 hybrid contribution 1.142 -1.227 -0.901 1.903 sum -7.662 -3.769 10.602 13.614 Atomic orbital electron populations 1.21785 0.94073 1.01876 1.02091 1.22088 0.95864 0.89033 1.00674 1.62241 1.22265 1.17818 1.21798 1.20027 0.83760 0.96517 0.93596 1.21582 0.92124 1.46434 0.95386 0.93083 1.25689 0.95655 0.95977 1.02034 1.70071 0.98285 1.51462 1.37178 0.85689 0.76649 0.78758 0.80962 1.20060 1.21279 1.19659 1.22657 1.00440 0.90355 0.89905 0.84887 1.30924 1.11415 1.05513 1.23173 1.08451 0.74019 0.79038 0.79324 1.93549 1.51814 1.68098 1.84166 1.93570 1.41926 1.82089 1.77689 1.30829 1.13080 1.20574 1.08234 1.23298 0.90385 0.95915 0.90981 0.87374 1.88640 1.50619 1.37531 1.52229 1.22954 1.00912 0.86934 0.97520 0.93400 0.91202 0.91630 0.93269 0.93556 0.96812 0.94803 0.93206 0.84862 0.83157 0.83238 0.80782 0.92608 0.90817 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 10.05 71.98 0.72 -2.88 16 2 C 0.05 1.72 5.14 86.30 0.44 2.17 16 3 N -0.52 -19.78 4.47 -871.39 -3.90 -23.68 16 4 C 0.19 9.07 3.74 85.56 0.32 9.39 16 5 C -0.52 -28.43 8.39 25.60 0.21 -28.21 16 6 H 0.05 2.81 7.70 -2.91 -0.02 2.79 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 C 0.08 2.28 2.53 45.62 0.12 2.39 16 14 H 0.13 3.10 6.95 -2.39 -0.02 3.09 16 15 C -0.58 -17.58 6.66 72.70 0.48 -17.09 16 16 S 2.41 62.89 6.05 -56.49 -0.34 62.55 16 17 O -0.98 -33.67 18.16 -127.50 -2.32 -35.99 16 18 O -0.96 -27.63 18.16 -127.50 -2.32 -29.94 16 19 C -0.60 -11.98 6.72 72.19 0.48 -11.49 16 20 C 0.06 1.37 1.97 30.79 0.06 1.43 16 21 H 0.11 2.02 7.47 -2.39 -0.02 2.00 16 22 O -0.37 -11.90 4.68 -148.98 -0.70 -12.60 16 23 C 0.01 0.31 10.36 113.37 1.17 1.48 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.06 1.41 6.82 -2.39 -0.02 1.39 16 27 H 0.05 1.97 7.11 -2.39 -0.02 1.95 16 28 H 0.05 1.40 4.57 -2.39 -0.01 1.39 16 29 H 0.01 0.74 4.99 -2.39 -0.01 0.73 16 30 H 0.03 1.78 5.08 -11.32 -0.06 1.72 16 31 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.13 4.97 5.30 -2.39 -0.01 4.95 16 33 H 0.15 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.15 3.06 7.83 -2.38 -0.02 3.04 16 35 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.14 7.61 -2.39 -0.02 1.12 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.16 7.82 -2.39 -0.02 1.14 16 Total: -1.00 -73.96 304.94 -1.76 -75.72 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.01 Total: 14.23 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 4.48 Total: -42.12 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.61 Total: -78.24 kcal Atomic # 8 Polarization: -73.20 SS G_CDS: -5.33 Total: -78.53 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 62.89 SS G_CDS: -0.34 Total: 62.55 kcal Total: -73.96 -1.76 -75.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595331668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.493 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds