Wall clock time and date at job start Mon Mar 30 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46769 * 2 1 4 4 O 1.42898 * 109.47078 * 240.00355 * 2 1 3 5 5 C 1.52994 * 109.47197 * 119.99835 * 2 1 3 6 6 N 1.46503 * 115.54854 * 62.15354 * 5 2 1 7 7 S 1.65603 * 119.99820 * 203.39005 * 6 5 2 8 8 O 1.42094 * 104.27845 * 184.18449 * 7 6 5 9 9 O 1.42107 * 104.27844 * 312.04139 * 7 6 5 10 10 C 1.81401 * 104.44838 * 68.11196 * 7 6 5 11 11 C 1.53006 * 109.46857 * 185.37951 * 10 7 6 12 12 C 1.53003 * 109.46819 * 179.97438 * 11 10 7 13 13 C 1.50697 * 109.47170 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99772 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00132 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00024 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47226 * 90.00064 * 17 15 13 19 19 H 1.48503 * 109.47027 * 209.99587 * 17 15 13 20 20 H 1.48499 * 109.47185 * 329.99930 * 17 15 13 21 21 C 1.52997 * 117.50204 * 276.48091 * 5 2 1 22 22 C 1.53001 * 117.49874 * 207.82200 * 5 2 1 23 23 H 1.09001 * 109.46931 * 174.95580 * 1 2 3 24 24 H 1.08998 * 109.47070 * 54.95334 * 1 2 3 25 25 H 1.08998 * 109.47212 * 294.95182 * 1 2 3 26 26 H 0.96703 * 113.99580 * 299.99493 * 4 2 1 27 27 H 0.96993 * 119.99998 * 23.39405 * 6 5 2 28 28 H 1.08998 * 109.47456 * 305.37855 * 10 7 6 29 29 H 1.08995 * 109.46961 * 65.38024 * 10 7 6 30 30 H 1.08996 * 109.47450 * 299.99894 * 11 10 7 31 31 H 1.09002 * 109.47016 * 60.00557 * 11 10 7 32 32 H 1.08996 * 109.47058 * 300.00178 * 12 11 10 33 33 H 1.09002 * 109.47080 * 59.99745 * 12 11 10 34 34 H 0.97002 * 120.00335 * 180.02562 * 16 15 13 35 35 H 1.09006 * 117.49537 * 0.02562 * 21 5 2 36 36 H 1.08997 * 117.50241 * 145.01802 * 21 5 2 37 37 H 1.09002 * 117.50132 * 214.97894 * 22 5 2 38 38 H 1.08995 * 117.49911 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.6685 -2.1341 1.3590 7 16 1.6298 -2.8671 2.8435 8 8 1.3345 -4.2268 2.5553 9 8 2.8610 -2.4972 3.4492 10 6 0.2375 -2.0810 3.7003 11 6 0.1789 -2.5823 5.1447 12 6 -0.9951 -1.9187 5.8675 13 6 -1.0525 -2.4119 7.2903 14 1 -0.3241 -3.1268 7.6439 15 6 -2.0347 -1.9506 8.1408 16 7 -2.9212 -1.0797 7.7105 17 14 -2.1053 -2.5615 9.9047 18 1 -1.2872 -1.6735 10.7693 19 1 -3.5135 -2.5508 10.3763 20 1 -1.5716 -3.9456 9.9710 21 6 2.1311 0.0880 2.5445 22 6 3.4071 -0.3056 1.7962 23 1 -0.3633 -1.0237 -0.0904 24 1 -0.3633 0.5901 -0.8413 25 1 -0.3633 0.4335 0.9317 26 1 1.7210 -1.5952 -1.2329 27 1 1.4453 -2.6402 0.5623 28 1 0.3722 -0.9994 3.6963 29 1 -0.6921 -2.3332 3.1902 30 1 0.0441 -3.6638 5.1488 31 1 1.1086 -2.3300 5.6548 32 1 -0.8598 -0.8372 5.8634 33 1 -1.9249 -2.1705 5.3575 34 1 -3.6121 -0.7549 8.3090 35 1 1.8272 1.1342 2.5067 36 1 1.9149 -0.4308 3.4783 37 1 4.0300 -1.0833 2.2382 38 1 3.9433 0.4813 1.2659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595361707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:11 Heat of formation + Delta-G solvation = -109.192175 kcal Electronic energy + Delta-G solvation = -20402.623266 eV Core-core repulsion = 17179.880853 eV Total energy + Delta-G solvation = -3222.742413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60013 -37.12661 -36.13187 -35.77311 -34.74989 -32.34037 -32.15533 -30.70543 -27.92848 -24.41072 -23.74737 -22.47666 -21.18367 -20.47630 -19.17902 -18.28678 -17.11212 -16.61998 -16.20989 -15.75788 -15.51160 -14.98705 -14.61448 -14.50106 -14.40770 -13.86231 -13.24122 -12.67168 -12.40459 -12.34475 -12.22714 -12.16139 -11.91476 -11.88456 -11.79414 -11.40393 -11.27527 -11.19347 -11.01565 -10.92067 -10.84450 -10.43802 -10.18575 -9.98619 -9.51012 -9.26959 -9.04864 -8.43886 -6.08841 -4.12039 0.34267 2.63293 3.28413 3.34727 3.36493 3.38731 3.85299 4.13519 4.15543 4.24985 4.36683 4.40615 4.66606 4.80741 4.96313 5.06618 5.10530 5.23513 5.27946 5.43771 5.50547 5.56039 5.76359 5.84193 5.87977 5.90850 6.13897 6.20179 6.39819 6.73380 6.81719 7.26102 7.52718 7.62194 7.88865 8.29135 8.94060 9.52976 11.02335 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027290 B = 0.004272 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.752028 B = 6552.755646 C = 6924.462049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.143 3.857 3 H 0.114 0.886 4 O -0.555 6.555 5 C 0.075 3.925 6 N -1.089 6.089 7 S 2.599 3.401 8 O -0.963 6.963 9 O -0.955 6.955 10 C -0.616 4.616 11 C -0.105 4.105 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.202 4.202 22 C -0.173 4.173 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.373 0.627 27 H 0.413 0.587 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 3.163 -16.489 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.082 3.918 3 H 0.131 0.869 4 O -0.360 6.360 5 C -0.015 4.015 6 N -0.843 5.843 7 S 2.695 3.305 8 O -0.953 6.953 9 O -0.945 6.945 10 C -0.748 4.748 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.240 4.240 22 C -0.213 4.213 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.221 0.779 27 H 0.247 0.753 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.569 3.233 -16.139 18.557 hybrid contribution -1.154 -0.537 0.854 1.533 sum 7.415 2.697 -15.285 17.201 Atomic orbital electron populations 1.22502 0.95432 1.03187 1.03437 1.21575 0.93322 0.95622 0.81235 0.86872 1.86601 1.77342 1.29043 1.43032 1.21173 1.01502 0.81790 0.97078 1.55166 1.85210 1.18112 1.25848 1.05473 0.77310 0.74186 0.73540 1.93579 1.86553 1.32220 1.82965 1.93567 1.40629 1.83890 1.76424 1.30811 1.18796 1.13920 1.11242 1.21512 1.03617 1.00796 0.88553 1.19057 0.91288 0.95838 0.94506 1.21245 1.13453 1.25813 0.96020 0.92378 1.25008 0.95461 0.94986 0.98832 1.69950 1.16489 1.30982 1.35979 0.86558 0.77248 0.79371 0.84655 1.20543 1.21156 1.19736 1.23864 1.03244 1.01999 0.94921 1.23767 0.91215 1.04307 1.01983 0.91874 0.91428 0.90705 0.77915 0.75268 0.84781 0.85195 0.91747 0.91385 0.96093 0.96121 0.92877 0.86651 0.87320 0.86090 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 9.42 37.16 0.35 -1.04 16 2 C 0.14 1.16 3.55 -26.74 -0.09 1.07 16 3 H 0.11 0.82 8.11 -51.92 -0.42 0.40 16 4 O -0.56 -4.83 13.34 -35.23 -0.47 -5.30 16 5 C 0.08 0.74 2.34 -131.82 -0.31 0.43 16 6 N -1.09 -11.25 5.73 0.54 0.00 -11.25 16 7 S 2.60 37.09 4.95 -107.50 -0.53 36.56 16 8 O -0.96 -16.59 18.08 -57.54 -1.04 -17.63 16 9 O -0.96 -15.87 14.23 -57.54 -0.82 -16.69 16 10 C -0.62 -9.20 5.61 37.16 0.21 -8.99 16 11 C -0.11 -2.08 5.16 -26.73 -0.14 -2.22 16 12 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 13 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.20 -2.14 8.39 -26.70 -0.22 -2.36 16 22 C -0.17 -1.87 9.56 -26.69 -0.26 -2.13 16 23 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.37 2.19 7.96 45.56 0.36 2.55 16 27 H 0.41 3.26 7.81 -34.47 -0.27 2.99 16 28 H 0.13 1.79 5.43 -51.93 -0.28 1.51 16 29 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.34 4.16 -51.93 -0.22 1.12 16 37 H 0.12 1.56 6.49 -51.93 -0.34 1.23 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -34.61 321.45 -8.24 -42.85 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.93 Total: 3.78 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -1.01 Total: -28.01 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.74 Total: -36.75 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -2.33 Total: -39.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 37.09 SS G_CDS: -0.53 Total: 36.56 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.61 -8.24 -42.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595361707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.343 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds