Wall clock time and date at job start Mon Mar 30 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46769 * 2 1 4 4 O 1.42898 * 109.47078 * 240.00355 * 2 1 3 5 5 C 1.52994 * 109.47197 * 119.99835 * 2 1 3 6 6 N 1.46503 * 115.54854 * 62.15354 * 5 2 1 7 7 S 1.65603 * 119.99820 * 203.39005 * 6 5 2 8 8 O 1.42094 * 104.27845 * 184.18449 * 7 6 5 9 9 O 1.42107 * 104.27844 * 312.04139 * 7 6 5 10 10 C 1.81401 * 104.44838 * 68.11196 * 7 6 5 11 11 C 1.53006 * 109.46857 * 185.37951 * 10 7 6 12 12 C 1.53003 * 109.46819 * 179.97438 * 11 10 7 13 13 C 1.50697 * 109.47170 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99772 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00132 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00024 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47226 * 90.00064 * 17 15 13 19 19 H 1.48503 * 109.47027 * 209.99587 * 17 15 13 20 20 H 1.48499 * 109.47185 * 329.99930 * 17 15 13 21 21 C 1.52997 * 117.50204 * 276.48091 * 5 2 1 22 22 C 1.53001 * 117.49874 * 207.82200 * 5 2 1 23 23 H 1.09001 * 109.46931 * 174.95580 * 1 2 3 24 24 H 1.08998 * 109.47070 * 54.95334 * 1 2 3 25 25 H 1.08998 * 109.47212 * 294.95182 * 1 2 3 26 26 H 0.96703 * 113.99580 * 299.99493 * 4 2 1 27 27 H 0.96993 * 119.99998 * 23.39405 * 6 5 2 28 28 H 1.08998 * 109.47456 * 305.37855 * 10 7 6 29 29 H 1.08995 * 109.46961 * 65.38024 * 10 7 6 30 30 H 1.08996 * 109.47450 * 299.99894 * 11 10 7 31 31 H 1.09002 * 109.47016 * 60.00557 * 11 10 7 32 32 H 1.08996 * 109.47058 * 300.00178 * 12 11 10 33 33 H 1.09002 * 109.47080 * 59.99745 * 12 11 10 34 34 H 0.97002 * 120.00335 * 180.02562 * 16 15 13 35 35 H 1.09006 * 117.49537 * 0.02562 * 21 5 2 36 36 H 1.08997 * 117.50241 * 145.01802 * 21 5 2 37 37 H 1.09002 * 117.50132 * 214.97894 * 22 5 2 38 38 H 1.08995 * 117.49911 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.6685 -2.1341 1.3590 7 16 1.6298 -2.8671 2.8435 8 8 1.3345 -4.2268 2.5553 9 8 2.8610 -2.4972 3.4492 10 6 0.2375 -2.0810 3.7003 11 6 0.1789 -2.5823 5.1447 12 6 -0.9951 -1.9187 5.8675 13 6 -1.0525 -2.4119 7.2903 14 1 -0.3241 -3.1268 7.6439 15 6 -2.0347 -1.9506 8.1408 16 7 -2.9212 -1.0797 7.7105 17 14 -2.1053 -2.5615 9.9047 18 1 -1.2872 -1.6735 10.7693 19 1 -3.5135 -2.5508 10.3763 20 1 -1.5716 -3.9456 9.9710 21 6 2.1311 0.0880 2.5445 22 6 3.4071 -0.3056 1.7962 23 1 -0.3633 -1.0237 -0.0904 24 1 -0.3633 0.5901 -0.8413 25 1 -0.3633 0.4335 0.9317 26 1 1.7210 -1.5952 -1.2329 27 1 1.4453 -2.6402 0.5623 28 1 0.3722 -0.9994 3.6963 29 1 -0.6921 -2.3332 3.1902 30 1 0.0441 -3.6638 5.1488 31 1 1.1086 -2.3300 5.6548 32 1 -0.8598 -0.8372 5.8634 33 1 -1.9249 -2.1705 5.3575 34 1 -3.6121 -0.7549 8.3090 35 1 1.8272 1.1342 2.5067 36 1 1.9149 -0.4308 3.4783 37 1 4.0300 -1.0833 2.2382 38 1 3.9433 0.4813 1.2659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595361707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:11 Heat of formation + Delta-G solvation = -136.842483 kcal Electronic energy + Delta-G solvation = -20403.822273 eV Core-core repulsion = 17179.880853 eV Total energy + Delta-G solvation = -3223.941420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38613 -38.30310 -37.19322 -36.78131 -36.49321 -34.20841 -33.16664 -31.31231 -29.73471 -25.80585 -24.87929 -23.39523 -22.43873 -21.72867 -20.26628 -19.22482 -18.64326 -18.04603 -17.20801 -17.12397 -16.51687 -16.37633 -15.90998 -15.65126 -15.35927 -14.81369 -14.49345 -14.11989 -13.89751 -13.63431 -13.40071 -13.27543 -13.05802 -13.01949 -12.86124 -12.73348 -12.66630 -12.63978 -12.31721 -12.10367 -12.05395 -11.71718 -11.66905 -11.38221 -11.11174 -10.86597 -10.57874 -10.04029 -8.23255 -6.34088 -0.84722 1.40245 1.40502 1.51879 1.58948 2.39233 2.53008 2.72438 3.10487 3.12022 3.37929 3.51928 3.56548 3.71592 3.84110 3.94696 4.18463 4.34719 4.38203 4.43537 4.61314 4.66895 4.78752 4.92661 4.96558 5.04116 5.05423 5.19273 5.26506 5.34423 5.44520 5.61724 5.78605 5.97656 6.18970 6.75916 6.81234 7.35369 8.88119 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027290 B = 0.004272 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.752028 B = 6552.755646 C = 6924.462049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.150 3.850 3 H 0.126 0.874 4 O -0.567 6.567 5 C 0.081 3.919 6 N -1.074 6.074 7 S 2.626 3.374 8 O -0.991 6.991 9 O -0.978 6.978 10 C -0.616 4.616 11 C -0.105 4.105 12 C 0.033 3.967 13 C -0.553 4.553 14 H 0.059 0.941 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.212 4.212 22 C -0.183 4.183 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.385 0.615 27 H 0.428 0.572 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.005 0.995 33 H 0.003 0.997 34 H 0.265 0.735 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 3.523 -17.278 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.089 3.911 3 H 0.144 0.856 4 O -0.373 6.373 5 C -0.010 4.010 6 N -0.833 5.833 7 S 2.721 3.279 8 O -0.982 6.982 9 O -0.968 6.968 10 C -0.747 4.747 11 C -0.144 4.144 12 C -0.006 4.006 13 C -0.591 4.591 14 H 0.077 0.923 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.250 4.250 22 C -0.222 4.222 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.234 0.766 27 H 0.265 0.735 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.024 0.976 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.788 3.571 -16.934 19.410 hybrid contribution -1.199 -0.621 1.039 1.704 sum 7.589 2.950 -15.895 17.859 Atomic orbital electron populations 1.22525 0.94831 1.03639 1.03733 1.21618 0.93696 0.95810 0.79947 0.85594 1.86587 1.77612 1.30111 1.43035 1.21413 1.00845 0.81033 0.97695 1.54734 1.84804 1.18786 1.24966 1.04445 0.76297 0.73269 0.73860 1.93539 1.86761 1.34215 1.83639 1.93545 1.41630 1.84103 1.77543 1.30778 1.20424 1.15076 1.08425 1.21305 1.01429 1.00420 0.91239 1.18946 0.92532 0.95167 0.93923 1.21729 1.13632 1.25989 0.97757 0.92285 1.25890 0.95057 0.95089 1.03266 1.70058 1.17122 1.32057 1.37595 0.85510 0.77510 0.79102 0.79344 1.19703 1.20545 1.19002 1.23968 1.03372 1.03383 0.94285 1.23785 0.91404 1.04480 1.02510 0.91509 0.90683 0.90807 0.76613 0.73518 0.83137 0.83550 0.91871 0.91368 0.97625 0.97884 0.92620 0.84189 0.89254 0.88492 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 9.42 71.98 0.68 -1.64 16 2 C 0.15 2.02 3.55 30.59 0.11 2.13 16 3 H 0.13 1.41 8.11 -2.38 -0.02 1.39 16 4 O -0.57 -8.34 13.34 -148.98 -1.99 -10.33 16 5 C 0.08 1.42 2.34 3.60 0.01 1.43 16 6 N -1.07 -20.40 5.73 -152.22 -0.87 -21.27 16 7 S 2.63 73.01 4.95 -56.49 -0.28 72.73 16 8 O -0.99 -33.46 18.08 -127.65 -2.31 -35.77 16 9 O -0.98 -32.31 14.23 -127.65 -1.82 -34.13 16 10 C -0.62 -18.01 5.61 71.98 0.40 -17.60 16 11 C -0.10 -4.17 5.16 30.60 0.16 -4.01 16 12 C 0.03 1.65 4.97 29.85 0.15 1.80 16 13 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 17 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.21 -4.14 8.39 30.62 0.26 -3.89 16 22 C -0.18 -3.67 9.56 30.62 0.29 -3.38 16 23 H 0.07 0.76 8.11 -2.39 -0.02 0.74 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.38 3.50 7.96 -74.06 -0.59 2.91 16 27 H 0.43 5.83 7.81 -96.75 -0.76 5.08 16 28 H 0.15 3.89 5.43 -2.39 -0.01 3.88 16 29 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.09 2.13 4.16 -2.39 -0.01 2.12 16 37 H 0.10 2.47 6.49 -2.39 -0.02 2.45 16 38 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -73.87 321.45 -2.47 -76.35 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.27 Total: 16.56 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 2.75 Total: -55.27 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -0.59 Total: -75.91 kcal Atomic # 8 Polarization: -74.12 SS G_CDS: -6.11 Total: -80.23 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 73.01 SS G_CDS: -0.28 Total: 72.73 kcal Total: -73.87 -2.47 -76.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595361707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.497 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds