Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99703 * 2 1 4 4 O 1.20822 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99879 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.46847 * 60.00040 * 5 3 2 7 7 C 1.53001 * 109.47357 * 300.00444 * 5 3 2 8 8 N 1.46494 * 109.47290 * 180.02562 * 5 3 2 9 9 C 1.34776 * 120.00009 * 204.99952 * 8 5 3 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 5 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 5 12 12 C 1.39235 * 120.28458 * 356.67675 * 11 9 8 13 13 C 1.38213 * 120.09249 * 180.28306 * 12 11 9 14 14 C 1.38827 * 120.67921 * 359.69384 * 13 12 11 15 15 C 1.37601 * 120.56893 * 0.02562 * 14 13 12 16 16 C 1.40712 * 119.88037 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.32641 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00072 * 145.79353 * 17 16 15 19 19 C 1.40272 * 120.00206 * 325.79005 * 17 16 15 20 20 N 1.30633 * 119.99972 * 340.74887 * 19 17 16 21 21 Si 1.86798 * 120.00264 * 160.74343 * 19 17 16 22 22 H 1.48499 * 109.47225 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47050 * 300.00357 * 21 19 17 24 24 H 1.48501 * 109.47036 * 60.00089 * 21 19 17 25 25 H 1.09004 * 109.46995 * 299.99641 * 1 2 3 26 26 H 1.08995 * 109.47074 * 59.99616 * 1 2 3 27 27 H 1.09000 * 109.46681 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47061 * 179.97438 * 7 5 3 29 29 H 1.09003 * 109.47003 * 300.00075 * 7 5 3 30 30 H 1.08998 * 109.47084 * 59.99927 * 7 5 3 31 31 H 0.96994 * 119.99831 * 25.00024 * 8 5 3 32 32 H 1.07999 * 119.94851 * 359.97438 * 12 11 9 33 33 H 1.08002 * 119.66180 * 179.71936 * 13 12 11 34 34 H 1.08002 * 119.72085 * 180.02562 * 14 13 12 35 35 H 1.08000 * 120.06075 * 180.02562 * 15 14 13 36 36 H 0.97003 * 119.99800 * 354.82684 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1129 0.5816 1.2501 8 7 3.9816 2.6798 0.0011 9 6 5.1873 3.0262 -0.4916 10 8 5.9302 2.1727 -0.9371 11 6 5.6055 4.4400 -0.4906 12 6 4.7332 5.4300 -0.0461 13 6 5.1273 6.7547 -0.0523 14 6 6.3934 7.1150 -0.4933 15 6 7.2797 6.1587 -0.9331 16 6 6.9028 4.8030 -0.9379 17 6 7.8026 3.8162 -1.3867 18 1 7.8040 2.8382 -0.9286 19 6 8.6966 4.1038 -2.4287 20 7 8.4660 5.1112 -3.2277 21 14 10.2169 3.0465 -2.6736 22 1 10.9926 3.5558 -3.8330 23 1 11.0599 3.1012 -1.4522 24 1 9.8073 1.6423 -2.9298 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 5.2014 0.6383 1.2503 29 1 3.7228 1.0758 2.1399 30 1 3.8039 -0.4637 1.2501 31 1 3.3889 3.3606 0.3560 32 1 3.7454 5.1628 0.2994 33 1 4.4434 7.5174 0.2897 34 1 6.6853 8.1548 -0.4911 35 1 8.2627 6.4482 -1.2739 36 1 7.6403 5.6141 -3.1484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600986427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -107.124408 kcal Electronic energy + Delta-G solvation = -21256.872565 eV Core-core repulsion = 17898.775866 eV Total energy + Delta-G solvation = -3358.096699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73401 -39.04749 -37.21590 -36.54936 -34.64775 -33.88949 -31.18316 -29.66682 -29.10464 -27.84561 -25.37450 -24.48594 -22.50278 -21.13051 -20.54637 -19.65277 -18.27706 -17.55120 -17.19091 -16.55785 -15.88125 -15.27536 -14.70676 -14.28347 -14.16503 -14.07770 -13.82125 -13.41385 -13.34471 -12.73336 -12.62975 -12.40435 -12.17965 -12.11336 -11.73298 -11.54414 -11.13942 -10.97699 -10.92522 -10.76267 -10.45049 -10.37418 -10.16751 -9.64408 -9.09264 -8.65718 -8.57898 -7.80898 -7.62061 -7.16674 -4.48401 2.06466 2.19840 2.44884 2.73738 3.19905 3.30502 3.40322 3.80455 3.98915 4.03884 4.58906 4.61614 4.90809 4.97872 5.11201 5.19868 5.31052 5.45854 5.65721 5.78107 5.90481 6.03597 6.12670 6.16940 6.25584 6.47377 6.71197 6.87652 6.98598 7.26375 7.48743 7.57711 7.59026 7.71789 7.86598 8.06061 8.18779 8.28423 8.70776 8.83531 9.23700 10.02603 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.005202 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.627564 B = 5380.847294 C = 6449.846452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.460 3.540 4 O -0.503 6.503 5 C 0.158 3.842 6 H 0.124 0.876 7 C -0.156 4.156 8 N -0.736 5.736 9 C 0.570 3.430 10 O -0.534 6.534 11 C -0.266 4.266 12 C -0.041 4.041 13 C -0.258 4.258 14 C -0.074 4.074 15 C -0.201 4.201 16 C 0.122 3.878 17 C -0.466 4.466 18 H 0.106 0.894 19 C 0.031 3.969 20 N -0.792 5.792 21 Si 1.071 2.929 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.272 1.272 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.401 0.599 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 -7.463 5.754 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.302 3.698 4 O -0.390 6.390 5 C 0.051 3.949 6 H 0.141 0.859 7 C -0.214 4.214 8 N -0.394 5.394 9 C 0.365 3.635 10 O -0.412 6.412 11 C -0.271 4.271 12 C -0.060 4.060 13 C -0.277 4.277 14 C -0.093 4.093 15 C -0.220 4.220 16 C 0.118 3.882 17 C -0.493 4.493 18 H 0.124 0.876 19 C -0.191 4.191 20 N -0.415 5.415 21 Si 0.894 3.106 22 H -0.200 1.200 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.238 0.762 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.764 -7.911 4.455 11.946 hybrid contribution -2.245 0.779 1.093 2.616 sum -10.009 -7.131 5.548 13.484 Atomic orbital electron populations 1.23281 0.76323 1.03681 1.02621 1.86509 1.23395 1.33104 1.84071 1.24065 0.92241 0.81501 0.71968 1.90656 1.66909 1.36354 1.45066 1.20188 0.85266 0.86675 1.02759 0.85897 1.22128 1.03422 1.00247 0.95634 1.45968 1.20270 1.06115 1.67097 1.18386 0.79293 0.89611 0.76221 1.90682 1.52142 1.51897 1.46515 1.19282 0.96358 0.90331 1.21156 1.20769 0.96366 0.93286 0.95597 1.20255 0.97961 0.95002 1.14523 1.20758 0.93984 0.97436 0.97148 1.21253 0.99321 0.93332 1.08063 1.17483 0.89521 0.92148 0.89086 1.21182 1.12015 1.01363 1.14718 0.87622 1.27280 1.02437 0.96721 0.92639 1.70389 1.26392 1.13364 1.31371 0.83553 0.73913 0.75769 0.77381 1.19952 1.19942 1.19763 0.91874 0.91842 0.88007 0.89976 0.92217 0.90761 0.76175 0.88925 0.88820 0.88821 0.87471 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.28 10.47 -39.27 -0.41 -4.69 16 3 C 0.46 6.66 7.32 36.01 0.26 6.92 16 4 O -0.50 -8.36 15.59 -18.75 -0.29 -8.65 16 5 C 0.16 2.45 3.09 -69.08 -0.21 2.23 16 6 H 0.12 1.98 7.58 -51.93 -0.39 1.59 16 7 C -0.16 -2.04 9.41 37.16 0.35 -1.69 16 8 N -0.74 -13.57 4.90 -56.01 -0.27 -13.85 16 9 C 0.57 13.05 7.69 -12.52 -0.10 12.96 16 10 O -0.53 -13.55 13.22 5.27 0.07 -13.48 16 11 C -0.27 -6.49 5.92 -104.36 -0.62 -7.11 16 12 C -0.04 -0.89 9.53 -39.22 -0.37 -1.27 16 13 C -0.26 -5.49 10.03 -39.37 -0.39 -5.89 16 14 C -0.07 -1.65 10.01 -39.60 -0.40 -2.04 16 15 C -0.20 -4.98 7.87 -38.88 -0.31 -5.28 16 16 C 0.12 3.23 5.17 -106.54 -0.55 2.67 16 17 C -0.47 -12.62 7.65 -37.82 -0.29 -12.91 16 18 H 0.11 2.95 5.92 -52.49 -0.31 2.64 16 19 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 20 N -0.79 -21.08 12.57 55.56 0.70 -20.38 16 21 Si 1.07 22.19 29.98 -169.99 -5.10 17.10 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.40 7.04 5.83 -40.82 -0.24 6.80 16 32 H 0.09 1.74 6.41 -52.49 -0.34 1.40 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.11 2.70 6.94 -52.49 -0.36 2.34 16 36 H 0.30 8.15 6.55 -40.82 -0.27 7.88 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -30.31 311.51 -6.34 -36.65 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -4.09 Total: 11.92 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.65 Total: -9.31 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.42 Total: -34.23 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.63 Total: -26.82 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.10 Total: 17.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.31 -6.34 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600986427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.474 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds