Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99703 * 2 1 4 4 O 1.20822 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99879 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.46847 * 60.00040 * 5 3 2 7 7 C 1.53001 * 109.47357 * 300.00444 * 5 3 2 8 8 N 1.46494 * 109.47290 * 180.02562 * 5 3 2 9 9 C 1.34776 * 120.00009 * 204.99952 * 8 5 3 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 5 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 5 12 12 C 1.39235 * 120.28458 * 356.67675 * 11 9 8 13 13 C 1.38213 * 120.09249 * 180.28306 * 12 11 9 14 14 C 1.38827 * 120.67921 * 359.69384 * 13 12 11 15 15 C 1.37601 * 120.56893 * 0.02562 * 14 13 12 16 16 C 1.40712 * 119.88037 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.32641 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00072 * 145.79353 * 17 16 15 19 19 C 1.40272 * 120.00206 * 325.79005 * 17 16 15 20 20 N 1.30633 * 119.99972 * 340.74887 * 19 17 16 21 21 Si 1.86798 * 120.00264 * 160.74343 * 19 17 16 22 22 H 1.48499 * 109.47225 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47050 * 300.00357 * 21 19 17 24 24 H 1.48501 * 109.47036 * 60.00089 * 21 19 17 25 25 H 1.09004 * 109.46995 * 299.99641 * 1 2 3 26 26 H 1.08995 * 109.47074 * 59.99616 * 1 2 3 27 27 H 1.09000 * 109.46681 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47061 * 179.97438 * 7 5 3 29 29 H 1.09003 * 109.47003 * 300.00075 * 7 5 3 30 30 H 1.08998 * 109.47084 * 59.99927 * 7 5 3 31 31 H 0.96994 * 119.99831 * 25.00024 * 8 5 3 32 32 H 1.07999 * 119.94851 * 359.97438 * 12 11 9 33 33 H 1.08002 * 119.66180 * 179.71936 * 13 12 11 34 34 H 1.08002 * 119.72085 * 180.02562 * 14 13 12 35 35 H 1.08000 * 120.06075 * 180.02562 * 15 14 13 36 36 H 0.97003 * 119.99800 * 354.82684 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1129 0.5816 1.2501 8 7 3.9816 2.6798 0.0011 9 6 5.1873 3.0262 -0.4916 10 8 5.9302 2.1727 -0.9371 11 6 5.6055 4.4400 -0.4906 12 6 4.7332 5.4300 -0.0461 13 6 5.1273 6.7547 -0.0523 14 6 6.3934 7.1150 -0.4933 15 6 7.2797 6.1587 -0.9331 16 6 6.9028 4.8030 -0.9379 17 6 7.8026 3.8162 -1.3867 18 1 7.8040 2.8382 -0.9286 19 6 8.6966 4.1038 -2.4287 20 7 8.4660 5.1112 -3.2277 21 14 10.2169 3.0465 -2.6736 22 1 10.9926 3.5558 -3.8330 23 1 11.0599 3.1012 -1.4522 24 1 9.8073 1.6423 -2.9298 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 5.2014 0.6383 1.2503 29 1 3.7228 1.0758 2.1399 30 1 3.8039 -0.4637 1.2501 31 1 3.3889 3.3606 0.3560 32 1 3.7454 5.1628 0.2994 33 1 4.4434 7.5174 0.2897 34 1 6.6853 8.1548 -0.4911 35 1 8.2627 6.4482 -1.2739 36 1 7.6403 5.6141 -3.1484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600986427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -125.716818 kcal Electronic energy + Delta-G solvation = -21257.678793 eV Core-core repulsion = 17898.775866 eV Total energy + Delta-G solvation = -3358.902926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91676 -40.73133 -38.91601 -37.73883 -36.23060 -35.67757 -32.76255 -31.46933 -30.77143 -28.67137 -27.19392 -25.77335 -24.15321 -22.87041 -21.91971 -21.27385 -20.04772 -18.97421 -18.42479 -17.65718 -17.40678 -16.74549 -16.41583 -15.93068 -15.78966 -15.66131 -15.38655 -14.79565 -14.47029 -14.45112 -14.05367 -13.89063 -13.62773 -13.30255 -13.03865 -12.93929 -12.71975 -12.63397 -12.50227 -12.01269 -11.95072 -11.89052 -11.62863 -11.46661 -10.95615 -10.43856 -10.23063 -9.64526 -9.50853 -9.11201 -6.46764 0.36504 0.90146 0.91843 1.34146 1.49586 1.64461 1.79507 2.19117 2.32797 2.36529 2.74235 3.53092 3.54270 3.91715 3.98519 4.21098 4.24684 4.26979 4.31180 4.43498 4.63831 4.67504 4.70376 4.80789 4.86955 5.09559 5.12494 5.18185 5.37657 5.41381 5.64008 5.69253 5.87363 5.95357 6.18039 6.31631 6.47308 6.59204 6.81263 6.89462 7.47877 8.04402 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.005202 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.627564 B = 5380.847294 C = 6449.846452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.472 3.528 4 O -0.526 6.526 5 C 0.151 3.849 6 H 0.114 0.886 7 C -0.147 4.147 8 N -0.722 5.722 9 C 0.568 3.432 10 O -0.566 6.566 11 C -0.285 4.285 12 C -0.043 4.043 13 C -0.245 4.245 14 C -0.070 4.070 15 C -0.224 4.224 16 C 0.099 3.901 17 C -0.507 4.507 18 H 0.086 0.914 19 C -0.002 4.002 20 N -0.816 5.816 21 Si 1.117 2.883 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.269 1.269 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.408 0.592 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 -7.696 7.027 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.315 3.685 4 O -0.415 6.415 5 C 0.045 3.955 6 H 0.132 0.868 7 C -0.206 4.206 8 N -0.379 5.379 9 C 0.362 3.638 10 O -0.446 6.446 11 C -0.290 4.290 12 C -0.062 4.062 13 C -0.264 4.264 14 C -0.089 4.089 15 C -0.243 4.243 16 C 0.095 3.905 17 C -0.535 4.535 18 H 0.104 0.896 19 C -0.218 4.218 20 N -0.439 5.439 21 Si 0.934 3.066 22 H -0.191 1.191 23 H -0.183 1.183 24 H -0.194 1.194 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.156 0.844 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.246 0.754 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.759 -8.152 5.760 13.960 hybrid contribution -1.948 0.878 0.829 2.292 sum -11.708 -7.274 6.588 15.277 Atomic orbital electron populations 1.23660 0.74025 1.06158 1.02777 1.86490 1.25470 1.31354 1.83323 1.23631 0.91494 0.81934 0.71487 1.90649 1.67224 1.37233 1.46422 1.20360 0.86677 0.84797 1.03706 0.86827 1.22067 1.01926 1.01863 0.94695 1.45708 1.18764 1.07885 1.65567 1.18299 0.80306 0.89002 0.76162 1.90663 1.53441 1.52546 1.47992 1.19699 0.96381 0.92073 1.20856 1.21130 0.97293 0.93049 0.94695 1.20779 0.97866 0.95735 1.12057 1.21156 0.93880 0.98507 0.95316 1.21229 0.99645 0.93582 1.09854 1.17865 0.90443 0.92962 0.89278 1.21144 1.14655 1.01015 1.16645 0.89580 1.28509 1.04489 0.97080 0.91695 1.70503 1.26004 1.14938 1.32499 0.83011 0.71176 0.74324 0.78112 1.19096 1.18294 1.19378 0.91366 0.92099 0.84424 0.92070 0.91054 0.87883 0.75444 0.85625 0.84836 0.85645 0.88980 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.56 10.47 -51.45 -0.54 -8.10 16 3 C 0.47 12.78 7.32 71.24 0.52 13.30 16 4 O -0.53 -16.50 15.59 21.98 0.34 -16.15 16 5 C 0.15 4.52 3.09 44.25 0.14 4.66 16 6 H 0.11 3.66 7.58 -2.38 -0.02 3.65 16 7 C -0.15 -3.64 9.41 71.98 0.68 -2.96 16 8 N -0.72 -26.13 4.90 -449.36 -2.20 -28.33 16 9 C 0.57 26.43 7.69 86.67 0.67 27.09 16 10 O -0.57 -29.80 13.22 -4.06 -0.05 -29.86 16 11 C -0.29 -14.00 5.92 -19.70 -0.12 -14.12 16 12 C -0.04 -1.77 9.53 22.50 0.21 -1.56 16 13 C -0.25 -9.65 10.03 22.40 0.22 -9.42 16 14 C -0.07 -2.98 10.01 22.26 0.22 -2.76 16 15 C -0.22 -11.32 7.87 22.72 0.18 -11.14 16 16 C 0.10 5.38 5.17 -21.11 -0.11 5.27 16 17 C -0.51 -28.85 7.65 23.41 0.18 -28.67 16 18 H 0.09 5.11 5.92 -2.91 -0.02 5.09 16 19 C 0.00 -0.12 5.04 85.37 0.43 0.31 16 20 N -0.82 -45.31 12.57 21.88 0.28 -45.04 16 21 Si 1.12 46.21 29.98 68.60 2.06 48.26 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H 0.07 0.95 8.13 -2.38 -0.02 0.93 16 26 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.95 8.11 -2.39 -0.02 1.93 16 31 H 0.41 13.60 5.83 -92.71 -0.54 13.06 16 32 H 0.13 4.29 6.41 -2.91 -0.02 4.27 16 33 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.09 4.85 6.94 -2.91 -0.02 4.83 16 36 H 0.28 16.23 6.55 -92.71 -0.61 15.63 16 Total: -1.00 -68.48 311.51 5.04 -63.44 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.73 Total: 34.19 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.42 Total: -18.41 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.93 Total: -73.37 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -0.25 Total: -54.11 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.06 Total: 48.26 kcal Total: -68.48 5.04 -63.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600986427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.274 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds