Wall clock time and date at job start Mon Mar 30 2020 02:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 116.99916 * 2 1 4 4 O 1.20824 * 119.99549 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99883 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46907 * 179.97438 * 5 3 2 7 7 C 1.46504 * 120.00334 * 270.00247 * 6 5 3 8 8 C 1.34778 * 119.99965 * 89.99704 * 6 5 3 9 9 O 1.21614 * 119.99518 * 5.21229 * 8 6 5 10 10 C 1.47433 * 120.00289 * 185.20433 * 8 6 5 11 11 C 1.39225 * 120.28095 * 313.18873 * 10 8 6 12 12 C 1.38221 * 120.08919 * 180.27877 * 11 10 8 13 13 C 1.38827 * 120.67637 * 359.72091 * 12 11 10 14 14 C 1.37596 * 120.57178 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.88077 * 359.97438 * 14 13 12 16 16 C 1.40883 * 120.33043 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00562 * 149.53237 * 16 15 14 18 18 C 1.40284 * 119.99794 * 329.53269 * 16 15 14 19 19 N 1.30625 * 119.99585 * 336.31821 * 18 16 15 20 20 Si 1.86795 * 119.99996 * 156.32103 * 18 16 15 21 21 H 1.48493 * 109.47069 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47385 * 300.00147 * 20 18 16 23 23 H 1.48504 * 109.47070 * 59.99995 * 20 18 16 24 24 H 1.09001 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47555 * 299.99783 * 1 2 3 26 26 H 1.09005 * 109.47239 * 60.00343 * 1 2 3 27 27 H 1.09004 * 109.46896 * 60.00482 * 5 3 2 28 28 H 1.08997 * 109.47530 * 300.00172 * 5 3 2 29 29 H 1.09000 * 109.47114 * 265.66730 * 7 6 5 30 30 H 1.09004 * 109.46877 * 25.66446 * 7 6 5 31 31 H 1.08998 * 109.46900 * 145.66521 * 7 6 5 32 32 H 1.07995 * 119.95878 * 0.02562 * 11 10 8 33 33 H 1.08005 * 119.66458 * 179.73917 * 12 11 10 34 34 H 1.08000 * 119.71244 * 180.02562 * 13 12 11 35 35 H 1.07994 * 120.06182 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00778 * 354.10503 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1898 3.3816 -1.2692 8 6 4.1721 3.3268 1.1667 9 8 4.0920 2.7208 2.2181 10 6 4.4777 4.7691 1.1686 11 6 5.4441 5.2831 0.3083 12 6 5.7316 6.6351 0.3174 13 6 5.0608 7.4960 1.1754 14 6 4.0970 7.0184 2.0335 15 6 3.7854 5.6463 2.0440 16 6 2.7999 5.1472 2.9183 17 1 2.2142 4.2848 2.6360 18 6 2.5793 5.7704 4.1556 19 7 3.5280 6.4775 4.7090 20 14 0.9290 5.5890 5.0117 21 1 0.9519 6.3371 6.2942 22 1 -0.1433 6.1326 4.1400 23 1 0.6667 4.1525 5.2817 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9563 0.7807 -0.8892 28 1 3.9557 0.7810 0.8908 29 1 5.2431 3.3296 -1.5446 30 1 3.5873 2.9122 -2.0470 31 1 3.8937 4.4249 -1.1603 32 1 5.9728 4.6240 -0.3643 33 1 6.4856 7.0258 -0.3499 34 1 5.2975 8.5497 1.1693 35 1 3.5800 7.6956 2.6971 36 1 4.4111 6.5021 4.3085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600988601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:45 Heat of formation + Delta-G solvation = -95.643392 kcal Electronic energy + Delta-G solvation = -21794.991203 eV Core-core repulsion = 18437.392358 eV Total energy + Delta-G solvation = -3357.598845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40236 -39.15792 -37.16120 -36.23691 -34.88387 -33.86559 -30.69256 -29.56282 -28.85149 -27.12207 -26.04294 -25.01901 -22.34411 -21.13952 -20.77686 -18.95425 -17.74924 -17.60228 -16.70325 -16.59648 -15.96062 -15.51492 -14.87806 -14.61989 -14.08352 -13.98625 -13.58788 -13.31562 -12.95874 -12.57501 -12.56999 -12.23406 -12.08678 -12.01965 -11.89293 -11.64995 -11.24312 -10.92441 -10.75254 -10.70482 -10.39561 -10.37717 -10.08487 -9.57547 -9.04158 -8.85940 -8.34397 -7.75058 -7.65190 -7.22487 -4.48377 2.34047 2.40733 2.65374 2.74872 3.18363 3.29150 3.39010 3.56512 3.82823 4.02692 4.54385 4.93952 5.03617 5.12450 5.21083 5.39212 5.39835 5.42026 5.52600 5.70409 5.89068 5.99875 6.09886 6.17873 6.42753 6.47521 6.77005 6.81405 7.00336 7.27415 7.50825 7.58631 7.70735 7.83913 7.91319 7.94789 8.13822 8.18846 8.67640 8.79080 9.05080 10.00819 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.007697 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.757330 B = 3637.031745 C = 5184.706802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.436 3.564 4 O -0.487 6.487 5 C 0.129 3.871 6 N -0.614 5.614 7 C 0.087 3.913 8 C 0.589 3.411 9 O -0.533 6.533 10 C -0.259 4.259 11 C -0.047 4.047 12 C -0.262 4.262 13 C -0.073 4.073 14 C -0.208 4.208 15 C 0.129 3.871 16 C -0.480 4.480 17 H 0.080 0.920 18 C 0.039 3.961 19 N -0.785 5.785 20 Si 1.065 2.935 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -8.359 -9.773 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.276 3.724 4 O -0.372 6.372 5 C 0.003 3.997 6 N -0.350 5.350 7 C -0.056 4.056 8 C 0.382 3.618 9 O -0.409 6.409 10 C -0.264 4.264 11 C -0.066 4.066 12 C -0.282 4.282 13 C -0.091 4.091 14 C -0.227 4.227 15 C 0.125 3.875 16 C -0.507 4.507 17 H 0.098 0.902 18 C -0.184 4.184 19 N -0.407 5.407 20 Si 0.888 3.112 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.886 -7.846 -7.820 11.447 hybrid contribution 0.659 -0.410 -1.555 1.738 sum -2.227 -8.256 -9.375 12.689 Atomic orbital electron populations 1.23202 0.76791 1.03220 1.02560 1.86485 1.23184 1.33917 1.84678 1.24786 0.93203 0.81502 0.72926 1.90718 1.66710 1.36223 1.43505 1.20732 0.86532 0.86069 1.06357 1.47694 1.69572 1.10021 1.07732 1.21883 1.00056 0.99298 0.84320 1.18587 0.73982 0.87502 0.81699 1.90690 1.50998 1.68173 1.31010 1.19236 1.06889 0.90465 1.09788 1.20795 0.95588 0.94815 0.95357 1.20212 1.07462 0.93623 1.06871 1.20726 0.95597 0.97501 0.95309 1.21155 1.02831 0.94997 1.03698 1.17366 0.89406 0.90501 0.90271 1.20654 1.15366 1.12947 1.01704 0.90176 1.27122 1.04664 0.91054 0.95522 1.70370 1.04282 1.28082 1.37963 0.83647 0.73264 0.77812 0.76490 1.19660 1.19850 1.19945 0.88372 0.91890 0.92175 0.86872 0.85857 0.92803 0.92353 0.89716 0.88489 0.88870 0.88919 0.87499 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.21 10.57 -39.28 -0.41 -5.62 16 3 C 0.44 7.38 8.02 36.00 0.29 7.66 16 4 O -0.49 -10.17 16.18 -18.75 -0.30 -10.48 16 5 C 0.13 1.94 6.02 -5.19 -0.03 1.91 16 6 N -0.61 -11.36 2.36 -184.23 -0.44 -11.79 16 7 C 0.09 1.31 9.02 59.85 0.54 1.85 16 8 C 0.59 13.98 6.60 -12.52 -0.08 13.89 16 9 O -0.53 -14.36 15.27 5.26 0.08 -14.28 16 10 C -0.26 -6.41 5.03 -104.37 -0.53 -6.94 16 11 C -0.05 -1.00 7.68 -39.22 -0.30 -1.30 16 12 C -0.26 -5.50 10.03 -39.37 -0.39 -5.90 16 13 C -0.07 -1.62 10.01 -39.60 -0.40 -2.01 16 14 C -0.21 -5.25 7.97 -38.88 -0.31 -5.56 16 15 C 0.13 3.49 5.21 -106.54 -0.56 2.94 16 16 C -0.48 -13.57 7.73 -37.81 -0.29 -13.86 16 17 H 0.08 2.40 7.14 -52.49 -0.37 2.02 16 18 C 0.04 1.05 4.95 -17.30 -0.09 0.97 16 19 N -0.78 -21.38 12.46 55.56 0.69 -20.69 16 20 Si 1.06 23.09 30.00 -169.99 -5.10 17.99 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.11 1.16 8.07 -51.93 -0.42 0.74 16 28 H 0.12 1.90 7.36 -51.93 -0.38 1.51 16 29 H 0.05 0.67 7.06 -51.93 -0.37 0.31 16 30 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 31 H 0.08 1.46 6.09 -51.93 -0.32 1.15 16 32 H 0.10 1.74 6.07 -52.49 -0.32 1.42 16 33 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.11 2.76 6.82 -52.49 -0.36 2.40 16 36 H 0.30 8.39 6.79 -40.82 -0.28 8.11 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -33.47 310.95 -6.01 -39.48 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.14 Total: 5.57 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.08 Total: -4.87 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.26 Total: -32.48 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.64 Total: -30.38 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.10 Total: 17.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.47 -6.01 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600988601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.161 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds