Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 116.99916 * 2 1 4 4 O 1.20824 * 119.99549 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99883 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46907 * 179.97438 * 5 3 2 7 7 C 1.46504 * 120.00334 * 270.00247 * 6 5 3 8 8 C 1.34778 * 119.99965 * 89.99704 * 6 5 3 9 9 O 1.21614 * 119.99518 * 5.21229 * 8 6 5 10 10 C 1.47433 * 120.00289 * 185.20433 * 8 6 5 11 11 C 1.39225 * 120.28095 * 313.18873 * 10 8 6 12 12 C 1.38221 * 120.08919 * 180.27877 * 11 10 8 13 13 C 1.38827 * 120.67637 * 359.72091 * 12 11 10 14 14 C 1.37596 * 120.57178 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.88077 * 359.97438 * 14 13 12 16 16 C 1.40883 * 120.33043 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00562 * 149.53237 * 16 15 14 18 18 C 1.40284 * 119.99794 * 329.53269 * 16 15 14 19 19 N 1.30625 * 119.99585 * 336.31821 * 18 16 15 20 20 Si 1.86795 * 119.99996 * 156.32103 * 18 16 15 21 21 H 1.48493 * 109.47069 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47385 * 300.00147 * 20 18 16 23 23 H 1.48504 * 109.47070 * 59.99995 * 20 18 16 24 24 H 1.09001 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47555 * 299.99783 * 1 2 3 26 26 H 1.09005 * 109.47239 * 60.00343 * 1 2 3 27 27 H 1.09004 * 109.46896 * 60.00482 * 5 3 2 28 28 H 1.08997 * 109.47530 * 300.00172 * 5 3 2 29 29 H 1.09000 * 109.47114 * 265.66730 * 7 6 5 30 30 H 1.09004 * 109.46877 * 25.66446 * 7 6 5 31 31 H 1.08998 * 109.46900 * 145.66521 * 7 6 5 32 32 H 1.07995 * 119.95878 * 0.02562 * 11 10 8 33 33 H 1.08005 * 119.66458 * 179.73917 * 12 11 10 34 34 H 1.08000 * 119.71244 * 180.02562 * 13 12 11 35 35 H 1.07994 * 120.06182 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00778 * 354.10503 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.1898 3.3816 -1.2692 8 6 4.1721 3.3268 1.1667 9 8 4.0920 2.7208 2.2181 10 6 4.4777 4.7691 1.1686 11 6 5.4441 5.2831 0.3083 12 6 5.7316 6.6351 0.3174 13 6 5.0608 7.4960 1.1754 14 6 4.0970 7.0184 2.0335 15 6 3.7854 5.6463 2.0440 16 6 2.7999 5.1472 2.9183 17 1 2.2142 4.2848 2.6360 18 6 2.5793 5.7704 4.1556 19 7 3.5280 6.4775 4.7090 20 14 0.9290 5.5890 5.0117 21 1 0.9519 6.3371 6.2942 22 1 -0.1433 6.1326 4.1400 23 1 0.6667 4.1525 5.2817 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9563 0.7807 -0.8892 28 1 3.9557 0.7810 0.8908 29 1 5.2431 3.3296 -1.5446 30 1 3.5873 2.9122 -2.0470 31 1 3.8937 4.4249 -1.1603 32 1 5.9728 4.6240 -0.3643 33 1 6.4856 7.0258 -0.3499 34 1 5.2975 8.5497 1.1693 35 1 3.5800 7.6956 2.6971 36 1 4.4111 6.5021 4.3085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600988601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -117.181125 kcal Electronic energy + Delta-G solvation = -21795.925149 eV Core-core repulsion = 18437.392358 eV Total energy + Delta-G solvation = -3358.532791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78771 -40.80025 -38.92949 -37.62107 -36.51177 -35.73731 -32.34412 -31.41233 -30.27068 -28.23039 -27.61019 -26.79648 -23.99431 -22.93652 -22.25939 -20.63026 -19.60365 -18.89648 -18.23403 -17.92624 -17.35560 -17.09004 -16.63862 -16.29811 -15.75218 -15.62220 -15.05734 -14.56336 -14.40646 -14.30368 -14.24083 -14.02980 -13.65975 -13.31809 -13.14292 -13.03553 -12.94673 -12.66430 -12.53182 -12.05466 -11.91563 -11.87358 -11.79340 -11.44933 -10.98303 -10.68362 -9.84070 -9.62155 -9.53256 -9.22120 -6.52483 0.50280 0.89339 1.08195 1.37804 1.38355 1.54202 1.69050 2.11007 2.19080 2.23600 2.62269 3.47379 3.76742 3.84868 4.16827 4.20377 4.25138 4.26227 4.29024 4.34989 4.46158 4.62812 4.70325 4.75953 4.89408 4.92488 5.11771 5.25585 5.35610 5.44464 5.61310 5.72594 5.76104 5.91299 6.09676 6.31561 6.35906 6.65283 6.72857 6.80961 7.30627 7.95766 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.007697 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.757330 B = 3637.031745 C = 5184.706802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.437 3.563 4 O -0.537 6.537 5 C 0.125 3.875 6 N -0.608 5.608 7 C 0.080 3.920 8 C 0.581 3.419 9 O -0.581 6.581 10 C -0.275 4.275 11 C -0.042 4.042 12 C -0.242 4.242 13 C -0.071 4.071 14 C -0.231 4.231 15 C 0.101 3.899 16 C -0.525 4.525 17 H 0.046 0.954 18 C 0.005 3.995 19 N -0.806 5.806 20 Si 1.108 2.892 21 H -0.256 1.256 22 H -0.261 1.261 23 H -0.274 1.274 24 H 0.140 0.860 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.175 0.825 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -9.139 -12.664 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.280 3.720 4 O -0.426 6.426 5 C 0.000 4.000 6 N -0.342 5.342 7 C -0.061 4.061 8 C 0.374 3.626 9 O -0.461 6.461 10 C -0.280 4.280 11 C -0.061 4.061 12 C -0.261 4.261 13 C -0.090 4.090 14 C -0.250 4.250 15 C 0.097 3.903 16 C -0.553 4.553 17 H 0.064 0.936 18 C -0.211 4.211 19 N -0.429 5.429 20 Si 0.925 3.075 21 H -0.180 1.180 22 H -0.185 1.185 23 H -0.199 1.199 24 H 0.158 0.842 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.192 0.808 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.627 -8.649 -10.781 13.917 hybrid contribution 0.412 -0.253 -0.957 1.072 sum -1.216 -8.902 -11.738 14.782 Atomic orbital electron populations 1.23522 0.75116 1.05804 1.01983 1.86477 1.24785 1.32316 1.83881 1.25144 0.93939 0.81439 0.71506 1.90713 1.67875 1.37886 1.46077 1.21154 0.85485 0.84332 1.09009 1.47609 1.67864 1.11396 1.07295 1.22145 1.02942 0.97821 0.83185 1.18602 0.73935 0.87431 0.82642 1.90651 1.53270 1.69031 1.33176 1.19667 1.07257 0.91314 1.09719 1.21226 0.94196 0.95869 0.94782 1.20812 1.06503 0.93204 1.05539 1.21143 0.94155 0.99587 0.94075 1.21115 1.04650 0.94205 1.05075 1.17751 0.89832 0.91831 0.90861 1.20511 1.17755 1.13477 1.03584 0.93597 1.28316 1.07001 0.90227 0.95600 1.70481 1.03790 1.30554 1.38075 0.83144 0.70018 0.77933 0.76392 1.17966 1.18525 1.19913 0.84168 0.93661 0.91671 0.80790 0.86320 0.89131 0.89287 0.92262 0.84271 0.84285 0.85725 0.89326 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.36 -9.68 10.57 -51.48 -0.54 -10.23 16 3 C 0.44 14.48 8.02 71.23 0.57 15.05 16 4 O -0.54 -22.86 16.18 21.97 0.36 -22.51 16 5 C 0.12 3.50 6.02 85.63 0.52 4.01 16 6 N -0.61 -21.53 2.36 -855.02 -2.02 -23.55 16 7 C 0.08 2.13 9.02 127.77 1.15 3.28 16 8 C 0.58 27.97 6.60 86.67 0.57 28.54 16 9 O -0.58 -32.76 15.27 -4.08 -0.06 -32.82 16 10 C -0.28 -13.70 5.03 -19.70 -0.10 -13.80 16 11 C -0.04 -1.68 7.68 22.50 0.17 -1.51 16 12 C -0.24 -9.17 10.03 22.41 0.22 -8.94 16 13 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 14 C -0.23 -12.01 7.97 22.72 0.18 -11.83 16 15 C 0.10 5.71 5.21 -21.11 -0.11 5.60 16 16 C -0.53 -31.84 7.73 23.42 0.18 -31.65 16 17 H 0.05 2.99 7.14 -2.91 -0.02 2.97 16 18 C 0.01 0.30 4.95 85.37 0.42 0.72 16 19 N -0.81 -46.47 12.46 21.88 0.27 -46.19 16 20 Si 1.11 49.06 30.00 68.60 2.06 51.12 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.15 8.13 -2.39 -0.02 1.13 16 26 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 27 H 0.17 2.72 8.07 -2.39 -0.02 2.70 16 28 H 0.12 3.54 7.36 -2.39 -0.02 3.52 16 29 H 0.09 1.76 7.06 -2.39 -0.02 1.74 16 30 H 0.09 1.83 8.04 -2.39 -0.02 1.81 16 31 H 0.06 1.90 6.09 -2.39 -0.01 1.89 16 32 H 0.14 4.29 6.07 -2.91 -0.02 4.27 16 33 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.09 4.83 6.82 -2.91 -0.02 4.81 16 36 H 0.28 16.89 6.79 -92.71 -0.63 16.26 16 Total: -1.00 -80.62 310.95 6.50 -74.11 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.24 Total: 21.58 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.20 Total: -11.52 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -1.75 Total: -69.74 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -0.25 Total: -65.56 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.06 Total: 51.12 kcal Total: -80.62 6.50 -74.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600988601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.067 kcal (2) G-P(sol) polarization free energy of solvation -80.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds