Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47115 * 2 1 4 4 C 1.34225 * 116.99906 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99892 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00310 * 179.97438 * 4 3 2 7 7 N 1.46494 * 109.47597 * 179.97438 * 6 4 3 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 4 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28589 * 356.68203 * 10 8 7 12 12 C 1.38221 * 120.09856 * 180.27824 * 11 10 8 13 13 C 1.38826 * 120.67147 * 359.70359 * 12 11 10 14 14 C 1.37601 * 120.57272 * 359.97438 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02809 * 14 13 12 16 16 C 1.40891 * 120.32826 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99945 * 145.79815 * 16 15 14 18 18 C 1.40280 * 119.99726 * 325.79419 * 16 15 14 19 19 N 1.30629 * 119.99933 * 340.74440 * 18 16 15 20 20 Si 1.86801 * 119.99539 * 160.74541 * 18 16 15 21 21 H 1.48504 * 109.46785 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47134 * 299.99889 * 20 18 16 23 23 H 1.48491 * 109.47228 * 59.99956 * 20 18 16 24 24 H 1.08995 * 109.47107 * 300.00221 * 1 2 3 25 25 H 1.09006 * 109.46657 * 60.00435 * 1 2 3 26 26 H 1.08996 * 109.47488 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47107 * 239.99779 * 2 1 3 28 28 H 1.08998 * 109.46710 * 119.99919 * 2 1 3 29 29 H 1.09004 * 109.46984 * 59.99769 * 6 4 3 30 30 H 1.09005 * 109.47130 * 300.00069 * 6 4 3 31 31 H 0.96994 * 119.99831 * 359.97438 * 7 6 4 32 32 H 1.08007 * 119.95363 * 0.02562 * 11 10 8 33 33 H 1.07993 * 119.66821 * 179.72086 * 12 11 10 34 34 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 35 35 H 1.07990 * 120.06274 * 180.02562 * 14 13 12 36 36 H 0.96992 * 120.00306 * 354.83710 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3837 2.8607 0.0014 8 6 6.1178 3.9910 0.0006 9 8 5.5657 5.0746 -0.0007 10 6 7.5901 3.9138 0.0014 11 6 8.2284 2.6785 0.0725 12 6 9.6089 2.6110 0.0788 13 6 10.3748 3.7668 0.0085 14 6 9.7728 5.0017 -0.0693 15 6 8.3690 5.0979 -0.0773 16 6 7.7427 6.3575 -0.1561 17 1 6.8106 6.4645 -0.6908 18 6 8.3299 7.4725 0.4601 19 7 9.2213 7.3052 1.4002 20 14 7.8371 9.1965 -0.0638 21 1 8.5969 10.1924 0.7338 22 1 8.1412 9.3816 -1.5055 23 1 6.3819 9.3859 0.1633 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5844 3.4700 0.8895 30 1 3.5853 3.4690 -0.8905 31 1 5.8241 1.9964 0.0028 32 1 7.6440 1.7719 0.1270 33 1 10.0968 1.6494 0.1387 34 1 11.4525 3.6961 0.0141 35 1 10.3766 5.8953 -0.1240 36 1 9.4226 6.4136 1.7246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601003093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -110.789975 kcal Electronic energy + Delta-G solvation = -20721.430288 eV Core-core repulsion = 17363.174638 eV Total energy + Delta-G solvation = -3358.255650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69422 -39.00570 -37.19908 -36.69252 -34.25173 -33.62832 -32.04428 -30.30276 -29.44047 -27.80861 -25.18054 -23.55960 -22.37392 -21.26008 -20.78587 -19.72591 -18.25489 -17.68979 -16.98589 -16.95376 -15.65041 -15.20250 -15.00457 -14.68880 -14.13752 -14.05382 -13.90815 -13.61612 -13.17464 -13.02383 -12.70570 -12.52813 -12.16470 -12.11255 -11.85671 -11.74615 -11.14657 -10.92727 -10.79148 -10.78037 -10.64886 -10.37127 -10.17479 -9.64809 -9.09108 -8.65582 -8.57385 -7.80807 -7.62073 -7.16667 -4.48408 2.02235 2.20773 2.33671 2.73718 3.20200 3.30809 3.40709 3.86002 3.98693 4.04065 4.48460 4.61782 4.63852 4.69738 4.97578 5.35521 5.36460 5.42617 5.46606 5.49354 5.66394 5.89696 6.00410 6.16171 6.19485 6.46904 6.71148 6.85478 6.98555 7.26357 7.48711 7.54731 7.58060 7.71797 7.86601 8.06027 8.18760 8.27988 8.70757 8.83533 9.23059 10.02710 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.004293 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.806562 B = 6521.021032 C = 7718.474465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.461 3.539 5 O -0.506 6.506 6 C 0.134 3.866 7 N -0.743 5.743 8 C 0.568 3.432 9 O -0.535 6.535 10 C -0.266 4.266 11 C -0.041 4.041 12 C -0.258 4.258 13 C -0.074 4.074 14 C -0.201 4.201 15 C 0.122 3.878 16 C -0.466 4.466 17 H 0.106 0.894 18 C 0.031 3.969 19 N -0.792 5.792 20 Si 1.071 2.929 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.272 1.272 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.404 0.596 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -9.293 -1.962 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.304 3.696 5 O -0.394 6.394 6 C 0.008 3.992 7 N -0.404 5.404 8 C 0.363 3.637 9 O -0.413 6.413 10 C -0.271 4.271 11 C -0.060 4.060 12 C -0.277 4.277 13 C -0.093 4.093 14 C -0.220 4.220 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.124 0.876 18 C -0.191 4.191 19 N -0.415 5.415 20 Si 0.894 3.106 21 H -0.199 1.199 22 H -0.199 1.199 23 H -0.198 1.198 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.241 0.759 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.193 -7.216 -1.654 13.420 hybrid contribution -0.028 -2.561 -0.163 2.566 sum -11.220 -9.777 -1.817 14.993 Atomic orbital electron populations 1.21811 0.92486 1.02973 1.03692 1.23059 0.95441 0.80024 1.02754 1.86495 1.24080 1.32596 1.83995 1.23819 0.80832 0.92844 0.72091 1.90657 1.60308 1.42976 1.45425 1.20481 0.83505 0.89410 1.05773 1.45911 1.03494 1.10898 1.80059 1.18378 0.87648 0.82274 0.75360 1.90692 1.73182 1.27289 1.50145 1.19273 0.90085 0.94317 1.23434 1.20773 0.94499 0.95097 0.95661 1.20261 0.93379 0.96746 1.17363 1.20761 0.97652 0.93134 0.97783 1.21253 0.94683 0.96278 1.09752 1.17486 0.90891 0.92196 0.87692 1.21187 1.08715 0.92293 1.27118 0.87642 1.27287 0.92001 1.06478 0.93307 1.70384 1.22996 1.29776 1.18379 0.83548 0.77322 0.72686 0.77028 1.19947 1.19946 1.19750 0.91352 0.91363 0.90213 0.91101 0.91100 0.87603 0.87594 0.75880 0.88894 0.88791 0.88800 0.87453 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.36 -4.23 10.22 -39.24 -0.40 -4.63 16 4 C 0.46 6.40 8.03 36.00 0.29 6.69 16 5 O -0.51 -8.10 15.42 -18.75 -0.29 -8.39 16 6 C 0.13 2.00 6.26 -5.20 -0.03 1.96 16 7 N -0.74 -13.69 5.48 -62.56 -0.34 -14.03 16 8 C 0.57 13.12 7.73 -12.52 -0.10 13.03 16 9 O -0.53 -13.73 13.56 5.27 0.07 -13.66 16 10 C -0.27 -6.52 5.92 -104.37 -0.62 -7.13 16 11 C -0.04 -0.90 9.53 -39.22 -0.37 -1.27 16 12 C -0.26 -5.50 10.03 -39.37 -0.39 -5.89 16 13 C -0.07 -1.65 10.01 -39.60 -0.40 -2.05 16 14 C -0.20 -4.99 7.87 -38.88 -0.31 -5.29 16 15 C 0.12 3.23 5.17 -106.54 -0.55 2.68 16 16 C -0.47 -12.69 7.65 -37.81 -0.29 -12.98 16 17 H 0.11 2.97 5.93 -52.49 -0.31 2.66 16 18 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 19 N -0.79 -21.09 12.57 55.56 0.70 -20.39 16 20 Si 1.07 22.24 29.98 -169.99 -5.10 17.15 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 29 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.40 7.10 5.48 -40.82 -0.22 6.88 16 32 H 0.09 1.74 6.41 -52.48 -0.34 1.41 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.11 2.71 6.94 -52.49 -0.36 2.34 16 36 H 0.30 8.14 6.55 -40.82 -0.27 7.87 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -30.49 312.67 -6.99 -37.49 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.10 Total: 11.11 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.24 Total: -9.36 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.36 Total: -34.43 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.62 Total: -26.68 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.10 Total: 17.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.49 -6.99 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601003093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.301 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds