Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47115 * 2 1 4 4 C 1.34225 * 116.99906 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99892 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00310 * 179.97438 * 4 3 2 7 7 N 1.46494 * 109.47597 * 179.97438 * 6 4 3 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 4 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28589 * 356.68203 * 10 8 7 12 12 C 1.38221 * 120.09856 * 180.27824 * 11 10 8 13 13 C 1.38826 * 120.67147 * 359.70359 * 12 11 10 14 14 C 1.37601 * 120.57272 * 359.97438 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02809 * 14 13 12 16 16 C 1.40891 * 120.32826 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99945 * 145.79815 * 16 15 14 18 18 C 1.40280 * 119.99726 * 325.79419 * 16 15 14 19 19 N 1.30629 * 119.99933 * 340.74440 * 18 16 15 20 20 Si 1.86801 * 119.99539 * 160.74541 * 18 16 15 21 21 H 1.48504 * 109.46785 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47134 * 299.99889 * 20 18 16 23 23 H 1.48491 * 109.47228 * 59.99956 * 20 18 16 24 24 H 1.08995 * 109.47107 * 300.00221 * 1 2 3 25 25 H 1.09006 * 109.46657 * 60.00435 * 1 2 3 26 26 H 1.08996 * 109.47488 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47107 * 239.99779 * 2 1 3 28 28 H 1.08998 * 109.46710 * 119.99919 * 2 1 3 29 29 H 1.09004 * 109.46984 * 59.99769 * 6 4 3 30 30 H 1.09005 * 109.47130 * 300.00069 * 6 4 3 31 31 H 0.96994 * 119.99831 * 359.97438 * 7 6 4 32 32 H 1.08007 * 119.95363 * 0.02562 * 11 10 8 33 33 H 1.07993 * 119.66821 * 179.72086 * 12 11 10 34 34 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 35 35 H 1.07990 * 120.06274 * 180.02562 * 14 13 12 36 36 H 0.96992 * 120.00306 * 354.83710 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3837 2.8607 0.0014 8 6 6.1178 3.9910 0.0006 9 8 5.5657 5.0746 -0.0007 10 6 7.5901 3.9138 0.0014 11 6 8.2284 2.6785 0.0725 12 6 9.6089 2.6110 0.0788 13 6 10.3748 3.7668 0.0085 14 6 9.7728 5.0017 -0.0693 15 6 8.3690 5.0979 -0.0773 16 6 7.7427 6.3575 -0.1561 17 1 6.8106 6.4645 -0.6908 18 6 8.3299 7.4725 0.4601 19 7 9.2213 7.3052 1.4002 20 14 7.8371 9.1965 -0.0638 21 1 8.5969 10.1924 0.7338 22 1 8.1412 9.3816 -1.5055 23 1 6.3819 9.3859 0.1633 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5844 3.4700 0.8895 30 1 3.5853 3.4690 -0.8905 31 1 5.8241 1.9964 0.0028 32 1 7.6440 1.7719 0.1270 33 1 10.0968 1.6494 0.1387 34 1 11.4525 3.6961 0.0141 35 1 10.3766 5.8953 -0.1240 36 1 9.4226 6.4136 1.7246 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601003093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -129.324379 kcal Electronic energy + Delta-G solvation = -20722.234000 eV Core-core repulsion = 17363.174638 eV Total energy + Delta-G solvation = -3359.059362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82846 -40.72789 -38.86278 -37.90953 -36.02140 -35.30937 -32.80269 -32.02631 -31.27763 -29.22016 -27.03518 -24.61153 -23.81870 -22.83635 -22.17682 -21.38385 -20.05100 -19.00756 -18.34922 -17.96324 -17.19695 -16.74728 -16.40523 -16.25864 -15.79412 -15.63038 -15.39742 -15.14713 -14.46560 -14.26273 -14.01262 -13.87266 -13.65103 -13.56639 -12.97376 -12.91168 -12.69824 -12.54623 -12.50866 -12.02150 -11.95412 -11.78878 -11.60087 -11.47874 -10.95499 -10.46914 -10.21521 -9.64283 -9.50997 -9.11228 -6.46977 0.36469 0.90096 0.90930 1.26812 1.50022 1.64820 1.80027 2.18141 2.33176 2.39864 2.73993 3.48404 3.54205 3.98089 4.03758 4.12761 4.19675 4.22729 4.32142 4.34397 4.46317 4.75188 4.77141 4.86859 4.91120 5.07158 5.12132 5.30148 5.35988 5.41335 5.64032 5.69113 5.87238 5.95249 6.17810 6.31561 6.46025 6.58309 6.80877 6.89145 7.46282 8.04619 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.004293 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.806562 B = 6521.021032 C = 7718.474465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.353 6.353 4 C 0.474 3.526 5 O -0.528 6.528 6 C 0.129 3.871 7 N -0.729 5.729 8 C 0.566 3.434 9 O -0.567 6.567 10 C -0.285 4.285 11 C -0.043 4.043 12 C -0.246 4.246 13 C -0.070 4.070 14 C -0.224 4.224 15 C 0.098 3.902 16 C -0.508 4.508 17 H 0.086 0.914 18 C -0.002 4.002 19 N -0.815 5.815 20 Si 1.117 2.883 21 H -0.266 1.266 22 H -0.259 1.259 23 H -0.268 1.268 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.409 0.591 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 -11.317 -2.245 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.318 3.682 5 O -0.417 6.417 6 C 0.005 3.995 7 N -0.387 5.387 8 C 0.360 3.640 9 O -0.448 6.448 10 C -0.290 4.290 11 C -0.061 4.061 12 C -0.265 4.265 13 C -0.088 4.088 14 C -0.243 4.243 15 C 0.094 3.906 16 C -0.535 4.535 17 H 0.104 0.896 18 C -0.218 4.218 19 N -0.439 5.439 20 Si 0.934 3.066 21 H -0.191 1.191 22 H -0.184 1.184 23 H -0.193 1.193 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.248 0.752 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.924 -9.299 -1.943 15.245 hybrid contribution 0.130 -2.258 -0.089 2.264 sum -11.794 -11.558 -2.032 16.637 Atomic orbital electron populations 1.21843 0.90183 1.04543 1.03823 1.23415 0.97219 0.78495 1.03015 1.86491 1.22581 1.34513 1.83342 1.23405 0.81449 0.91795 0.71569 1.90648 1.60966 1.43405 1.46708 1.20620 0.81331 0.90777 1.06780 1.45626 1.05049 1.09723 1.78317 1.18295 0.87623 0.82840 0.75207 1.90674 1.73677 1.28789 1.51675 1.19682 0.91287 0.94972 1.23051 1.21133 0.95284 0.95201 0.94507 1.20790 0.93275 0.98065 1.14330 1.21161 0.99569 0.92332 0.95785 1.21231 0.94185 0.97137 1.11782 1.17873 0.92032 0.92952 0.87756 1.21149 1.08922 0.93816 1.29662 0.89638 1.28516 0.91296 1.09594 0.92366 1.70496 1.25066 1.28548 1.19811 0.83004 0.77191 0.68830 0.77558 1.19058 1.18381 1.19327 0.91245 0.91200 0.87896 0.90848 0.90914 0.86779 0.86541 0.75182 0.85575 0.84800 0.85610 0.88952 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.85 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.76 10.22 -51.37 -0.52 -8.29 16 4 C 0.47 12.37 8.03 71.24 0.57 12.94 16 5 O -0.53 -15.91 15.42 21.95 0.34 -15.57 16 6 C 0.13 3.71 6.26 85.63 0.54 4.25 16 7 N -0.73 -26.05 5.48 -470.10 -2.57 -28.62 16 8 C 0.57 26.29 7.73 86.67 0.67 26.96 16 9 O -0.57 -29.92 13.56 -4.06 -0.06 -29.97 16 10 C -0.29 -13.97 5.92 -19.70 -0.12 -14.08 16 11 C -0.04 -1.75 9.53 22.50 0.21 -1.54 16 12 C -0.25 -9.63 10.03 22.41 0.22 -9.41 16 13 C -0.07 -2.97 10.01 22.26 0.22 -2.75 16 14 C -0.22 -11.33 7.87 22.72 0.18 -11.15 16 15 C 0.10 5.34 5.17 -21.11 -0.11 5.23 16 16 C -0.51 -28.92 7.65 23.42 0.18 -28.75 16 17 H 0.09 5.09 5.93 -2.91 -0.02 5.07 16 18 C 0.00 -0.11 5.04 85.37 0.43 0.32 16 19 N -0.82 -45.18 12.57 21.88 0.28 -44.90 16 20 Si 1.12 46.15 29.98 68.60 2.06 48.21 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 28 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 30 H 0.12 3.15 8.14 -2.38 -0.02 3.13 16 31 H 0.41 13.61 5.48 -92.71 -0.51 13.10 16 32 H 0.13 4.29 6.41 -2.91 -0.02 4.27 16 33 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.09 4.85 6.94 -2.92 -0.02 4.83 16 36 H 0.28 16.19 6.55 -92.71 -0.61 15.58 16 Total: -1.00 -68.05 312.67 4.47 -63.58 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.77 Total: 33.03 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.19 Total: -17.47 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -2.30 Total: -73.53 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.24 Total: -53.83 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.06 Total: 48.21 kcal Total: -68.05 4.47 -63.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601003093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.742 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds