Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46979 * 2 1 4 4 C 1.36932 * 120.00148 * 293.78542 * 3 2 1 5 5 H 1.08010 * 119.99895 * 149.42387 * 4 3 2 6 6 C 1.38810 * 120.00241 * 329.43292 * 4 3 2 7 7 N 1.31625 * 119.99874 * 337.47708 * 6 4 3 8 8 Si 1.86801 * 120.00075 * 157.48269 * 6 4 3 9 9 H 1.48492 * 109.47558 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46997 * 120.00005 * 8 6 4 11 11 H 1.48498 * 109.47172 * 239.99274 * 8 6 4 12 12 S 1.65606 * 120.00165 * 113.79196 * 3 2 1 13 13 O 1.42101 * 104.27267 * 333.92546 * 12 3 2 14 14 O 1.42094 * 104.27696 * 206.06691 * 12 3 2 15 15 C 1.81401 * 104.44755 * 89.99522 * 12 3 2 16 16 H 1.08995 * 110.43786 * 62.46282 * 15 12 3 17 17 C 1.54888 * 110.48654 * 299.77537 * 15 12 3 18 18 C 1.54889 * 102.74714 * 203.38153 * 17 15 12 19 19 C 1.54270 * 104.19781 * 37.94425 * 18 17 15 20 20 C 1.53877 * 106.59639 * 336.38903 * 19 18 17 21 21 H 1.09000 * 110.02802 * 119.28381 * 20 19 18 22 22 O 1.42895 * 110.03135 * 240.66715 * 20 19 18 23 23 C 1.42900 * 113.99848 * 268.54628 * 22 20 19 24 24 H 1.08998 * 109.47070 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46671 * 300.00591 * 1 2 3 26 26 H 1.09000 * 109.46621 * 59.99542 * 1 2 3 27 27 H 1.08999 * 109.46778 * 240.00171 * 2 1 3 28 28 H 1.09000 * 109.46642 * 119.99901 * 2 1 3 29 29 H 0.96995 * 119.99765 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.75322 * 85.06816 * 17 15 12 31 31 H 1.09002 * 110.75886 * 321.69594 * 17 15 12 32 32 H 1.09007 * 110.48633 * 279.26569 * 18 17 15 33 33 H 1.08999 * 110.48632 * 156.62807 * 18 17 15 34 34 H 1.08998 * 110.03224 * 95.67223 * 19 18 17 35 35 H 1.09003 * 110.03083 * 217.10516 * 19 18 17 36 36 H 1.09001 * 109.47459 * 59.99976 * 23 22 20 37 37 H 1.09005 * 109.47505 * 180.02562 * 23 22 20 38 38 H 1.09004 * 109.47363 * 300.00139 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7957 2.1861 -1.0851 5 1 1.6829 3.2521 -0.9527 6 6 1.7146 1.6322 -2.3553 7 7 2.2691 0.4638 -2.6003 8 14 0.8187 2.5448 -3.7169 9 1 0.2875 3.8264 -3.1876 10 1 1.7612 2.8214 -4.8307 11 1 -0.3051 1.7117 -4.2150 12 16 2.8398 1.9691 1.3123 13 8 2.3696 1.1849 2.4000 14 8 2.6135 3.3711 1.2681 15 6 4.5798 1.5938 0.9623 16 1 4.9089 2.1172 0.0647 17 6 4.7846 0.0663 0.8086 18 6 6.2898 -0.1106 1.1284 19 6 6.5541 0.8916 2.2711 20 6 5.4668 1.9753 2.1655 21 1 4.8704 1.9958 3.0775 22 8 6.0686 3.2526 1.9456 23 6 6.3487 3.9773 3.1450 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2122 0.0766 -3.4878 30 1 4.5663 -0.2520 -0.2108 31 1 4.1707 -0.4799 1.5248 32 1 6.8965 0.1357 0.2569 33 1 6.4922 -1.1291 1.4597 34 1 6.4852 0.3862 3.2343 35 1 7.5408 1.3398 2.1537 36 1 7.0347 3.4011 3.7659 37 1 6.8036 4.9353 2.8930 38 1 5.4210 4.1485 3.6911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = -120.849704 kcal Electronic energy + Delta-G solvation = -21563.802282 eV Core-core repulsion = 18340.554361 eV Total energy + Delta-G solvation = -3223.247921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.63056 -36.17258 -35.78703 -35.34946 -34.46529 -31.81669 -29.23425 -28.54888 -27.94689 -25.85369 -24.88218 -21.61000 -20.50238 -20.24172 -18.33428 -17.25045 -16.74585 -16.13645 -16.03632 -14.99791 -14.78157 -14.62751 -14.35913 -13.69344 -13.48966 -13.20533 -12.93121 -12.45474 -12.21060 -12.01506 -11.85660 -11.34472 -11.26371 -11.21167 -10.98636 -10.94856 -10.74205 -10.69264 -10.64308 -10.43994 -10.34174 -10.27365 -10.12527 -9.77429 -9.53084 -9.36055 -9.13426 -7.84746 -6.52617 -4.06978 1.65150 3.09337 3.17393 3.25036 3.91129 4.01026 4.28769 4.69404 4.81941 4.91874 5.17502 5.25037 5.43228 5.48471 5.54841 5.60639 5.72811 5.79392 5.90610 5.98525 6.11199 6.15783 6.18773 6.28284 6.35479 6.41220 6.44380 6.58418 6.73685 6.76620 6.98618 7.22387 7.36097 7.48003 7.57868 8.33062 8.69932 9.18519 10.36717 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.007104 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.991463 B = 3940.504228 C = 4030.866015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.110 3.890 3 N -0.800 5.800 4 C -0.238 4.238 5 H 0.111 0.889 6 C 0.037 3.963 7 N -0.825 5.825 8 Si 0.920 3.080 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.276 1.276 12 S 2.477 3.523 13 O -1.004 7.004 14 O -0.982 6.982 15 C -0.619 4.619 16 H 0.133 0.867 17 C -0.091 4.091 18 C -0.113 4.113 19 C -0.142 4.142 20 C 0.110 3.890 21 H 0.056 0.944 22 O -0.377 6.377 23 C 0.026 3.974 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.274 0.726 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -2.018 3.655 6.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 N -0.623 5.623 4 C -0.386 4.386 5 H 0.129 0.871 6 C -0.176 4.176 7 N -0.464 5.464 8 Si 0.745 3.255 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.202 1.202 12 S 2.578 3.422 13 O -0.993 6.993 14 O -0.971 6.971 15 C -0.717 4.717 16 H 0.151 0.849 17 C -0.130 4.130 18 C -0.151 4.151 19 C -0.181 4.181 20 C 0.051 3.949 21 H 0.074 0.926 22 O -0.296 6.296 23 C -0.071 4.071 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.875 -1.664 4.378 6.761 hybrid contribution 0.366 0.121 -0.725 0.821 sum 5.241 -1.543 3.653 6.573 Atomic orbital electron populations 1.21889 0.97223 0.99681 1.01715 1.21446 0.93829 0.83438 1.02925 1.53739 1.54260 1.20028 1.34315 1.19888 1.40532 0.93429 0.84743 0.87148 1.25718 0.96744 0.96623 0.98546 1.69901 1.36871 1.17082 1.22511 0.85951 0.79355 0.80189 0.79998 1.18533 1.20387 1.20163 1.13547 0.76315 0.74973 0.77320 1.93329 1.78806 1.71210 1.56002 1.93351 1.83954 1.32613 1.87225 1.32133 1.30117 1.03907 1.05577 0.84922 1.22079 0.96120 0.91507 1.03251 1.22245 0.97032 0.97989 0.97849 1.22662 0.99219 0.96936 0.99239 1.22429 0.93095 0.83378 0.95991 0.92649 1.87999 1.81173 1.30371 1.30016 1.22807 0.99701 0.96537 0.88028 0.93649 0.93806 0.92212 0.87766 0.92472 0.91573 0.89145 0.91005 0.91535 0.91818 0.91651 0.91030 0.94337 0.89620 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.96 37.16 0.37 -2.56 16 2 C 0.11 2.39 5.53 -4.04 -0.02 2.37 16 3 N -0.80 -19.11 2.85 -59.91 -0.17 -19.28 16 4 C -0.24 -5.90 8.63 -15.06 -0.13 -6.03 16 5 H 0.11 2.84 7.26 -52.48 -0.38 2.46 16 6 C 0.04 0.86 4.63 -17.43 -0.08 0.78 16 7 N -0.82 -19.17 11.06 55.49 0.61 -18.56 16 8 Si 0.92 18.48 29.61 -169.99 -5.03 13.45 16 9 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 12 S 2.48 59.36 4.69 -107.50 -0.50 58.85 16 13 O -1.00 -25.04 16.26 -57.54 -0.94 -25.98 16 14 O -0.98 -26.54 16.82 -57.54 -0.97 -27.51 16 15 C -0.62 -12.80 3.33 -25.07 -0.08 -12.88 16 16 H 0.13 2.89 8.08 -51.93 -0.42 2.47 16 17 C -0.09 -1.66 6.03 -24.74 -0.15 -1.81 16 18 C -0.11 -1.74 6.83 -25.07 -0.17 -1.91 16 19 C -0.14 -2.21 6.61 -25.61 -0.17 -2.38 16 20 C 0.11 2.06 2.96 -25.61 -0.08 1.99 16 21 H 0.06 1.04 7.47 -51.93 -0.39 0.65 16 22 O -0.38 -7.14 10.26 -35.23 -0.36 -7.50 16 23 C 0.03 0.38 10.85 101.05 1.10 1.47 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.23 7.41 -51.93 -0.38 0.85 16 27 H 0.10 2.32 5.53 -51.93 -0.29 2.04 16 28 H 0.06 1.19 6.87 -51.93 -0.36 0.83 16 29 H 0.27 5.95 8.31 -40.82 -0.34 5.61 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 31 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -29.05 317.92 -7.94 -36.99 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.96 Total: 5.71 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 0.58 Total: -20.96 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.44 Total: -37.85 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -2.26 Total: -60.99 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 59.36 SS G_CDS: -0.50 Total: 58.85 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.05 -7.94 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.859 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds