Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46979 * 2 1 4 4 C 1.36932 * 120.00148 * 293.78542 * 3 2 1 5 5 H 1.08010 * 119.99895 * 149.42387 * 4 3 2 6 6 C 1.38810 * 120.00241 * 329.43292 * 4 3 2 7 7 N 1.31625 * 119.99874 * 337.47708 * 6 4 3 8 8 Si 1.86801 * 120.00075 * 157.48269 * 6 4 3 9 9 H 1.48492 * 109.47558 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46997 * 120.00005 * 8 6 4 11 11 H 1.48498 * 109.47172 * 239.99274 * 8 6 4 12 12 S 1.65606 * 120.00165 * 113.79196 * 3 2 1 13 13 O 1.42101 * 104.27267 * 333.92546 * 12 3 2 14 14 O 1.42094 * 104.27696 * 206.06691 * 12 3 2 15 15 C 1.81401 * 104.44755 * 89.99522 * 12 3 2 16 16 H 1.08995 * 110.43786 * 62.46282 * 15 12 3 17 17 C 1.54888 * 110.48654 * 299.77537 * 15 12 3 18 18 C 1.54889 * 102.74714 * 203.38153 * 17 15 12 19 19 C 1.54270 * 104.19781 * 37.94425 * 18 17 15 20 20 C 1.53877 * 106.59639 * 336.38903 * 19 18 17 21 21 H 1.09000 * 110.02802 * 119.28381 * 20 19 18 22 22 O 1.42895 * 110.03135 * 240.66715 * 20 19 18 23 23 C 1.42900 * 113.99848 * 268.54628 * 22 20 19 24 24 H 1.08998 * 109.47070 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46671 * 300.00591 * 1 2 3 26 26 H 1.09000 * 109.46621 * 59.99542 * 1 2 3 27 27 H 1.08999 * 109.46778 * 240.00171 * 2 1 3 28 28 H 1.09000 * 109.46642 * 119.99901 * 2 1 3 29 29 H 0.96995 * 119.99765 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.75322 * 85.06816 * 17 15 12 31 31 H 1.09002 * 110.75886 * 321.69594 * 17 15 12 32 32 H 1.09007 * 110.48633 * 279.26569 * 18 17 15 33 33 H 1.08999 * 110.48632 * 156.62807 * 18 17 15 34 34 H 1.08998 * 110.03224 * 95.67223 * 19 18 17 35 35 H 1.09003 * 110.03083 * 217.10516 * 19 18 17 36 36 H 1.09001 * 109.47459 * 59.99976 * 23 22 20 37 37 H 1.09005 * 109.47505 * 180.02562 * 23 22 20 38 38 H 1.09004 * 109.47363 * 300.00139 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7957 2.1861 -1.0851 5 1 1.6829 3.2521 -0.9527 6 6 1.7146 1.6322 -2.3553 7 7 2.2691 0.4638 -2.6003 8 14 0.8187 2.5448 -3.7169 9 1 0.2875 3.8264 -3.1876 10 1 1.7612 2.8214 -4.8307 11 1 -0.3051 1.7117 -4.2150 12 16 2.8398 1.9691 1.3123 13 8 2.3696 1.1849 2.4000 14 8 2.6135 3.3711 1.2681 15 6 4.5798 1.5938 0.9623 16 1 4.9089 2.1172 0.0647 17 6 4.7846 0.0663 0.8086 18 6 6.2898 -0.1106 1.1284 19 6 6.5541 0.8916 2.2711 20 6 5.4668 1.9753 2.1655 21 1 4.8704 1.9958 3.0775 22 8 6.0686 3.2526 1.9456 23 6 6.3487 3.9773 3.1450 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2122 0.0766 -3.4878 30 1 4.5663 -0.2520 -0.2108 31 1 4.1707 -0.4799 1.5248 32 1 6.8965 0.1357 0.2569 33 1 6.4922 -1.1291 1.4597 34 1 6.4852 0.3862 3.2343 35 1 7.5408 1.3398 2.1537 36 1 7.0347 3.4011 3.7659 37 1 6.8036 4.9353 2.8930 38 1 5.4210 4.1485 3.6911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = -140.396379 kcal Electronic energy + Delta-G solvation = -21564.649889 eV Core-core repulsion = 18340.554361 eV Total energy + Delta-G solvation = -3224.095529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02227 -37.95477 -37.69854 -36.82578 -36.47895 -33.61976 -30.96079 -29.97895 -29.28072 -27.10474 -26.69671 -23.34218 -22.03783 -21.56852 -20.16940 -18.96326 -18.49894 -17.82002 -17.67466 -16.65045 -16.30626 -16.23243 -15.94260 -15.29380 -14.88632 -14.65530 -14.62550 -14.06409 -13.81664 -13.73180 -13.24107 -13.07413 -12.80778 -12.71745 -12.66551 -12.60526 -12.58228 -12.45042 -12.11735 -12.06858 -11.93390 -11.80608 -11.56840 -11.46587 -11.20027 -11.05466 -10.63343 -9.64256 -8.31027 -5.94846 -0.20362 1.48304 1.52671 1.64290 2.17818 2.50149 2.69201 2.88988 3.25531 3.44655 3.53471 3.75555 3.87574 4.17696 4.29675 4.36977 4.40099 4.42953 4.49395 4.60994 4.71062 4.74584 4.76504 4.77475 4.92946 4.98724 5.03048 5.09623 5.16643 5.28754 5.36471 5.41483 5.65061 5.82826 6.14864 6.48595 6.84936 7.34920 8.59134 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021533 B = 0.007104 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.991463 B = 3940.504228 C = 4030.866015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.107 3.893 3 N -0.810 5.810 4 C -0.270 4.270 5 H 0.089 0.911 6 C 0.016 3.984 7 N -0.836 5.836 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.265 1.265 12 S 2.480 3.520 13 O -1.018 7.018 14 O -1.021 7.021 15 C -0.611 4.611 16 H 0.118 0.882 17 C -0.091 4.091 18 C -0.107 4.107 19 C -0.136 4.136 20 C 0.101 3.899 21 H 0.050 0.950 22 O -0.404 6.404 23 C 0.015 3.985 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.282 0.718 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -3.228 3.643 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 N -0.634 5.634 4 C -0.417 4.417 5 H 0.106 0.894 6 C -0.197 4.197 7 N -0.474 5.474 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.198 1.198 11 H -0.189 1.189 12 S 2.586 3.414 13 O -1.008 7.008 14 O -1.011 7.011 15 C -0.714 4.714 16 H 0.136 0.864 17 C -0.130 4.130 18 C -0.145 4.145 19 C -0.174 4.174 20 C 0.042 3.958 21 H 0.068 0.932 22 O -0.323 6.323 23 C -0.081 4.081 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.008 -2.881 4.356 7.961 hybrid contribution 0.077 0.508 -0.648 0.827 sum 6.085 -2.373 3.708 7.511 Atomic orbital electron populations 1.21879 0.96087 1.01490 1.00803 1.21564 0.94887 0.82460 1.02974 1.53589 1.55274 1.20676 1.33868 1.19764 1.43271 0.92871 0.85833 0.89359 1.26237 0.96656 0.97282 0.99486 1.69918 1.36648 1.17490 1.23347 0.85166 0.78631 0.78936 0.77622 1.19416 1.19759 1.18942 1.12902 0.77568 0.73922 0.77035 1.93298 1.79819 1.71056 1.56585 1.93295 1.85277 1.34835 1.87704 1.31841 1.27558 1.06004 1.06046 0.86413 1.22119 0.98763 0.89230 1.02856 1.22267 0.94300 0.99839 0.98105 1.22662 0.98485 0.95784 1.00492 1.22561 0.94118 0.84831 0.94285 0.93169 1.87949 1.81218 1.30733 1.32436 1.23100 1.00233 0.97610 0.87135 0.90447 0.94613 0.93181 0.88101 0.91829 0.90773 0.90075 0.90807 0.91280 0.88708 0.89269 0.89550 0.91482 0.87588 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 9.96 71.98 0.72 -4.98 16 2 C 0.11 4.66 5.53 86.38 0.48 5.14 16 3 N -0.81 -39.60 2.85 -343.45 -0.98 -40.58 16 4 C -0.27 -13.80 8.63 84.03 0.73 -13.07 16 5 H 0.09 4.79 7.26 -2.91 -0.02 4.77 16 6 C 0.02 0.73 4.63 84.86 0.39 1.12 16 7 N -0.84 -38.53 11.06 21.65 0.24 -38.30 16 8 Si 0.97 37.71 29.61 68.60 2.03 39.75 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 11 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 12 S 2.48 121.83 4.69 -56.49 -0.27 121.56 16 13 O -1.02 -51.37 16.26 -127.65 -2.08 -53.44 16 14 O -1.02 -57.50 16.82 -127.65 -2.15 -59.64 16 15 C -0.61 -25.34 3.33 31.67 0.11 -25.23 16 16 H 0.12 5.26 8.08 -2.39 -0.02 5.24 16 17 C -0.09 -3.22 6.03 31.88 0.19 -3.03 16 18 C -0.11 -2.98 6.83 31.67 0.22 -2.76 16 19 C -0.14 -3.79 6.61 31.32 0.21 -3.59 16 20 C 0.10 3.69 2.96 31.32 0.09 3.78 16 21 H 0.05 1.85 7.47 -2.39 -0.02 1.83 16 22 O -0.40 -14.97 10.26 -148.98 -1.53 -16.50 16 23 C 0.02 0.41 10.85 113.37 1.23 1.64 16 24 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 2.06 7.41 -2.39 -0.02 2.04 16 27 H 0.10 4.48 5.53 -2.39 -0.01 4.47 16 28 H 0.06 2.63 6.87 -2.39 -0.02 2.61 16 29 H 0.28 11.96 8.31 -92.71 -0.77 11.19 16 30 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.18 7.96 -2.39 -0.02 2.16 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.03 1.00 8.10 -2.38 -0.02 0.98 16 Total: -1.00 -62.84 317.92 0.67 -62.18 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 1.03 Total: 25.95 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 4.36 Total: -40.98 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -0.74 Total: -78.87 kcal Atomic # 8 Polarization: -123.84 SS G_CDS: -5.75 Total: -129.59 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 121.83 SS G_CDS: -0.27 Total: 121.56 kcal Total: -62.84 0.67 -62.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.219 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds