Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99445 * 2 1 4 4 O 1.20819 * 120.00584 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99699 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47255 * 299.99950 * 5 3 2 7 7 C 1.53002 * 109.47116 * 60.00402 * 5 3 2 8 8 N 1.46502 * 109.46869 * 180.02562 * 5 3 2 9 9 C 1.34783 * 119.99996 * 155.00252 * 8 5 3 10 10 O 1.21616 * 119.99799 * 359.97438 * 9 8 5 11 11 C 1.47429 * 120.00222 * 179.97438 * 9 8 5 12 12 C 1.39226 * 120.27901 * 354.16761 * 11 9 8 13 13 C 1.38229 * 120.08849 * 180.27414 * 12 11 9 14 14 C 1.38828 * 120.67479 * 359.48259 * 13 12 11 15 15 C 1.37597 * 120.56905 * 0.51666 * 14 13 12 16 16 C 1.40705 * 119.88589 * 359.74761 * 15 14 13 17 17 C 1.40884 * 120.33250 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00408 * 145.82129 * 17 16 15 19 19 C 1.40278 * 119.99860 * 325.82989 * 17 16 15 20 20 N 1.30632 * 119.99663 * 350.75751 * 19 17 16 21 21 Si 1.86797 * 119.99957 * 170.75803 * 19 17 16 22 22 H 1.48493 * 109.47391 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47092 * 120.00249 * 21 19 17 24 24 H 1.48498 * 109.47180 * 239.99693 * 21 19 17 25 25 H 1.08998 * 109.47382 * 299.99479 * 1 2 3 26 26 H 1.08994 * 109.47440 * 60.00235 * 1 2 3 27 27 H 1.09002 * 109.46754 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47063 * 180.02562 * 7 5 3 29 29 H 1.09005 * 109.46778 * 299.99491 * 7 5 3 30 30 H 1.08991 * 109.47070 * 59.99473 * 7 5 3 31 31 H 0.96996 * 120.00200 * 334.99478 * 8 5 3 32 32 H 1.07997 * 119.95767 * 359.97438 * 12 11 9 33 33 H 1.08003 * 119.65862 * 179.72058 * 13 12 11 34 34 H 1.08003 * 119.71238 * 180.28016 * 14 13 12 35 35 H 1.07997 * 120.05574 * 179.76566 * 15 14 13 36 36 H 0.97000 * 119.99650 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9556 0.7811 0.8908 7 6 4.1138 0.5813 -1.2484 8 7 3.9815 2.6799 0.0011 9 6 5.1868 3.0262 0.4949 10 8 5.9295 2.1724 0.9404 11 6 5.6050 4.4400 0.4949 12 6 4.8144 5.4059 -0.1218 13 6 5.2131 6.7294 -0.1244 14 6 6.3952 7.1142 0.4936 15 6 7.1974 6.1825 1.1112 16 6 6.8173 4.8278 1.1234 17 6 7.6313 3.8660 1.7535 18 1 7.1810 3.0199 2.2512 19 6 9.0268 4.0074 1.7346 20 7 9.5803 4.9235 0.9857 21 14 10.0934 2.8858 2.7803 22 1 9.2294 1.9406 3.5322 23 1 11.0172 2.1222 1.9033 24 1 10.8818 3.7031 3.7371 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 5.2024 0.6380 -1.2477 29 1 3.8048 -0.4641 -1.2482 30 1 3.7244 1.0752 -2.1385 31 1 3.3890 3.3609 -0.3540 32 1 3.8908 5.1200 -0.6031 33 1 4.5966 7.4723 -0.6088 34 1 6.6895 8.1534 0.4861 35 1 8.1172 6.4905 1.5861 36 1 10.5453 5.0215 0.9729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601319989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -101.280968 kcal Electronic energy + Delta-G solvation = -21213.608462 eV Core-core repulsion = 17855.765153 eV Total energy + Delta-G solvation = -3357.843309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69975 -38.95106 -37.03563 -36.48455 -34.57978 -33.66170 -31.11042 -29.84160 -29.05329 -27.81521 -25.50479 -24.47405 -22.36051 -21.10505 -20.40771 -19.57617 -17.87116 -17.42537 -17.02181 -16.52110 -15.77294 -15.34012 -15.07156 -14.25077 -14.20821 -13.92072 -13.59995 -13.35166 -13.00814 -12.73008 -12.63612 -12.41768 -12.10545 -12.02999 -11.63559 -11.45917 -11.13363 -10.99569 -10.95134 -10.68335 -10.53195 -10.39996 -10.07408 -9.67205 -9.28502 -8.61657 -8.46293 -7.59220 -7.36245 -6.80435 -4.39515 2.09828 2.32362 2.48423 2.80790 3.10854 3.20175 3.22413 3.86317 3.97743 4.10634 4.62296 4.67151 4.92839 4.99966 5.16207 5.23802 5.33265 5.62951 5.70560 5.83962 6.02683 6.14442 6.16276 6.30521 6.31269 6.60218 6.91807 6.96661 7.12666 7.20962 7.46143 7.62138 7.62941 7.88166 7.97337 8.17439 8.30821 8.65303 8.81391 8.88747 9.30623 10.14889 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.005220 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.122001 B = 5362.318057 C = 6498.194642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.460 3.540 4 O -0.503 6.503 5 C 0.159 3.841 6 H 0.123 0.877 7 C -0.157 4.157 8 N -0.736 5.736 9 C 0.571 3.429 10 O -0.535 6.535 11 C -0.262 4.262 12 C -0.055 4.055 13 C -0.244 4.244 14 C -0.094 4.094 15 C -0.148 4.148 16 C 0.147 3.853 17 C -0.416 4.416 18 H 0.106 0.894 19 C 0.069 3.931 20 N -0.792 5.792 21 Si 0.917 3.083 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -6.826 -2.441 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.302 3.698 4 O -0.389 6.389 5 C 0.051 3.949 6 H 0.141 0.859 7 C -0.215 4.215 8 N -0.395 5.395 9 C 0.366 3.634 10 O -0.413 6.413 11 C -0.267 4.267 12 C -0.074 4.074 13 C -0.264 4.264 14 C -0.113 4.113 15 C -0.167 4.167 16 C 0.143 3.857 17 C -0.444 4.444 18 H 0.124 0.876 19 C -0.149 4.149 20 N -0.417 5.417 21 Si 0.741 3.259 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.927 -7.074 -2.177 12.383 hybrid contribution -0.082 0.067 0.036 0.112 sum -10.010 -7.007 -2.141 12.405 Atomic orbital electron populations 1.23274 0.76369 1.03647 1.02613 1.86509 1.23358 1.33151 1.84094 1.24074 0.92257 0.81479 0.71973 1.90656 1.66911 1.36332 1.45037 1.20186 0.85198 0.86751 1.02728 0.85915 1.22137 1.03515 1.00191 0.95678 1.45987 1.20158 1.06046 1.67276 1.18442 0.79279 0.89668 0.76016 1.90684 1.51862 1.51964 1.46767 1.19349 1.03088 0.90168 1.14093 1.20690 0.96516 0.93375 0.96821 1.20296 0.99981 0.95173 1.10919 1.20814 0.94815 0.97719 0.97981 1.21351 0.99876 0.92437 1.03028 1.17467 0.89115 0.92294 0.86821 1.20210 0.90194 1.07465 1.26546 0.87641 1.26127 0.99208 0.95350 0.94209 1.69726 1.12876 1.28831 1.30277 0.86107 0.79369 0.80401 0.80020 1.18028 1.19895 1.19912 0.91851 0.91882 0.88051 0.89900 0.90833 0.92220 0.76127 0.89116 0.89043 0.89040 0.86427 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.27 10.47 -39.26 -0.41 -4.68 16 3 C 0.46 6.64 7.32 36.01 0.26 6.90 16 4 O -0.50 -8.32 15.59 -18.74 -0.29 -8.61 16 5 C 0.16 2.45 3.09 -69.08 -0.21 2.24 16 6 H 0.12 1.95 7.58 -51.93 -0.39 1.56 16 7 C -0.16 -2.09 9.42 37.16 0.35 -1.74 16 8 N -0.74 -13.59 4.90 -56.00 -0.27 -13.86 16 9 C 0.57 13.08 7.68 -12.52 -0.10 12.98 16 10 O -0.53 -13.51 13.26 5.26 0.07 -13.44 16 11 C -0.26 -6.43 5.92 -104.37 -0.62 -7.04 16 12 C -0.06 -1.21 9.52 -39.22 -0.37 -1.58 16 13 C -0.24 -5.28 10.03 -39.37 -0.39 -5.67 16 14 C -0.09 -2.14 10.01 -39.60 -0.40 -2.53 16 15 C -0.15 -3.75 8.62 -38.88 -0.34 -4.08 16 16 C 0.15 3.93 5.51 -106.54 -0.59 3.34 16 17 C -0.42 -11.30 7.67 -37.81 -0.29 -11.59 16 18 H 0.11 2.95 5.92 -52.48 -0.31 2.64 16 19 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 20 N -0.79 -20.36 11.14 55.56 0.62 -19.74 16 21 Si 0.92 19.41 29.57 -169.99 -5.03 14.38 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.40 7.06 5.86 -40.82 -0.24 6.82 16 32 H 0.09 1.71 6.44 -52.49 -0.34 1.37 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.12 3.03 6.59 -52.49 -0.35 2.69 16 36 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -30.18 312.45 -6.46 -36.64 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.14 Total: 10.35 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.72 Total: -5.74 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.34 Total: -33.60 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.63 Total: -26.74 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.18 -6.46 -36.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.638 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds