Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99445 * 2 1 4 4 O 1.20819 * 120.00584 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99699 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47255 * 299.99950 * 5 3 2 7 7 C 1.53002 * 109.47116 * 60.00402 * 5 3 2 8 8 N 1.46502 * 109.46869 * 180.02562 * 5 3 2 9 9 C 1.34783 * 119.99996 * 155.00252 * 8 5 3 10 10 O 1.21616 * 119.99799 * 359.97438 * 9 8 5 11 11 C 1.47429 * 120.00222 * 179.97438 * 9 8 5 12 12 C 1.39226 * 120.27901 * 354.16761 * 11 9 8 13 13 C 1.38229 * 120.08849 * 180.27414 * 12 11 9 14 14 C 1.38828 * 120.67479 * 359.48259 * 13 12 11 15 15 C 1.37597 * 120.56905 * 0.51666 * 14 13 12 16 16 C 1.40705 * 119.88589 * 359.74761 * 15 14 13 17 17 C 1.40884 * 120.33250 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00408 * 145.82129 * 17 16 15 19 19 C 1.40278 * 119.99860 * 325.82989 * 17 16 15 20 20 N 1.30632 * 119.99663 * 350.75751 * 19 17 16 21 21 Si 1.86797 * 119.99957 * 170.75803 * 19 17 16 22 22 H 1.48493 * 109.47391 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47092 * 120.00249 * 21 19 17 24 24 H 1.48498 * 109.47180 * 239.99693 * 21 19 17 25 25 H 1.08998 * 109.47382 * 299.99479 * 1 2 3 26 26 H 1.08994 * 109.47440 * 60.00235 * 1 2 3 27 27 H 1.09002 * 109.46754 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47063 * 180.02562 * 7 5 3 29 29 H 1.09005 * 109.46778 * 299.99491 * 7 5 3 30 30 H 1.08991 * 109.47070 * 59.99473 * 7 5 3 31 31 H 0.96996 * 120.00200 * 334.99478 * 8 5 3 32 32 H 1.07997 * 119.95767 * 359.97438 * 12 11 9 33 33 H 1.08003 * 119.65862 * 179.72058 * 13 12 11 34 34 H 1.08003 * 119.71238 * 180.28016 * 14 13 12 35 35 H 1.07997 * 120.05574 * 179.76566 * 15 14 13 36 36 H 0.97000 * 119.99650 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9556 0.7811 0.8908 7 6 4.1138 0.5813 -1.2484 8 7 3.9815 2.6799 0.0011 9 6 5.1868 3.0262 0.4949 10 8 5.9295 2.1724 0.9404 11 6 5.6050 4.4400 0.4949 12 6 4.8144 5.4059 -0.1218 13 6 5.2131 6.7294 -0.1244 14 6 6.3952 7.1142 0.4936 15 6 7.1974 6.1825 1.1112 16 6 6.8173 4.8278 1.1234 17 6 7.6313 3.8660 1.7535 18 1 7.1810 3.0199 2.2512 19 6 9.0268 4.0074 1.7346 20 7 9.5803 4.9235 0.9857 21 14 10.0934 2.8858 2.7803 22 1 9.2294 1.9406 3.5322 23 1 11.0172 2.1222 1.9033 24 1 10.8818 3.7031 3.7371 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 5.2024 0.6380 -1.2477 29 1 3.8048 -0.4641 -1.2482 30 1 3.7244 1.0752 -2.1385 31 1 3.3890 3.3609 -0.3540 32 1 3.8908 5.1200 -0.6031 33 1 4.5966 7.4723 -0.6088 34 1 6.6895 8.1534 0.4861 35 1 8.1172 6.4905 1.5861 36 1 10.5453 5.0215 0.9729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -119.730655 kcal Electronic energy + Delta-G solvation = -21214.408500 eV Core-core repulsion = 17855.765153 eV Total energy + Delta-G solvation = -3358.643347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.87380 -40.62172 -38.70569 -37.69699 -36.12947 -35.47971 -32.67556 -31.68713 -30.68990 -28.64306 -27.34060 -25.73488 -24.00908 -22.82381 -21.78462 -21.20287 -19.53340 -18.85012 -18.36110 -17.61464 -17.29709 -17.11149 -16.50884 -15.92060 -15.75570 -15.47211 -14.97441 -14.77620 -14.48707 -14.38832 -14.06258 -13.69429 -13.47923 -13.29995 -13.00803 -12.86623 -12.83959 -12.60637 -12.49631 -12.29709 -11.89072 -11.86044 -11.60078 -11.47003 -11.13232 -10.34884 -10.15723 -9.41848 -9.23948 -8.66639 -6.35817 0.49503 0.95559 1.01384 1.36631 1.37954 1.50121 1.52424 2.23153 2.30409 2.42678 2.79262 3.57013 3.71444 3.95858 4.03011 4.29403 4.33463 4.33799 4.35086 4.58922 4.67169 4.71019 4.75034 4.90874 5.09694 5.12669 5.21463 5.24351 5.34044 5.46645 5.61396 5.82118 6.03887 6.10581 6.33519 6.50684 6.60380 6.75187 6.90256 6.98527 7.55325 8.31107 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.005220 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.122001 B = 5362.318057 C = 6498.194642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.472 3.528 4 O -0.526 6.526 5 C 0.151 3.849 6 H 0.116 0.884 7 C -0.148 4.148 8 N -0.723 5.723 9 C 0.570 3.430 10 O -0.566 6.566 11 C -0.282 4.282 12 C -0.055 4.055 13 C -0.237 4.237 14 C -0.091 4.091 15 C -0.176 4.176 16 C 0.118 3.882 17 C -0.455 4.455 18 H 0.085 0.915 19 C 0.032 3.968 20 N -0.821 5.821 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.266 1.266 24 H -0.256 1.256 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.408 0.592 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.190 -7.146 -3.378 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.315 3.685 4 O -0.415 6.415 5 C 0.045 3.955 6 H 0.133 0.867 7 C -0.207 4.207 8 N -0.380 5.380 9 C 0.364 3.636 10 O -0.447 6.447 11 C -0.287 4.287 12 C -0.074 4.074 13 C -0.256 4.256 14 C -0.109 4.109 15 C -0.195 4.195 16 C 0.114 3.886 17 C -0.483 4.483 18 H 0.102 0.898 19 C -0.183 4.183 20 N -0.448 5.448 21 Si 0.802 3.198 22 H -0.192 1.192 23 H -0.191 1.191 24 H -0.181 1.181 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.695 -7.398 -3.137 14.189 hybrid contribution 0.210 0.180 0.237 0.364 sum -11.485 -7.218 -2.900 13.871 Atomic orbital electron populations 1.23652 0.74070 1.06116 1.02780 1.86489 1.25435 1.31403 1.83355 1.23627 0.91491 0.81910 0.71495 1.90650 1.67218 1.37212 1.46377 1.20350 0.86634 0.84872 1.03634 0.86658 1.22073 1.01887 1.01860 0.94849 1.45724 1.18676 1.07809 1.65778 1.18328 0.80247 0.89023 0.76005 1.90662 1.53219 1.52576 1.48194 1.19743 1.03015 0.91865 1.14079 1.21051 0.97233 0.93157 0.95946 1.20779 0.99542 0.95866 1.09453 1.21181 0.94571 0.98690 0.96468 1.21310 1.00454 0.92721 1.05009 1.17839 0.90290 0.92975 0.87525 1.20177 0.91523 1.07721 1.28905 0.89751 1.26813 0.99715 0.96741 0.94990 1.69750 1.13549 1.30170 1.31294 0.85178 0.77543 0.78505 0.78591 1.19152 1.19104 1.18074 0.92041 0.91423 0.84484 0.92188 0.87924 0.91132 0.75432 0.85782 0.85183 0.86124 0.87974 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.58 10.47 -51.41 -0.54 -8.11 16 3 C 0.47 12.79 7.32 71.24 0.52 13.31 16 4 O -0.53 -16.48 15.59 21.98 0.34 -16.14 16 5 C 0.15 4.55 3.09 44.25 0.14 4.69 16 6 H 0.12 3.68 7.58 -2.39 -0.02 3.66 16 7 C -0.15 -3.76 9.42 71.98 0.68 -3.09 16 8 N -0.72 -26.30 4.90 -449.34 -2.20 -28.50 16 9 C 0.57 26.59 7.68 86.66 0.67 27.26 16 10 O -0.57 -29.78 13.26 -4.08 -0.05 -29.83 16 11 C -0.28 -14.00 5.92 -19.70 -0.12 -14.12 16 12 C -0.06 -2.32 9.52 22.51 0.21 -2.11 16 13 C -0.24 -9.60 10.03 22.41 0.22 -9.37 16 14 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 15 C -0.18 -9.10 8.62 22.72 0.20 -8.91 16 16 C 0.12 6.50 5.51 -21.11 -0.12 6.38 16 17 C -0.45 -25.96 7.67 23.41 0.18 -25.78 16 18 H 0.08 5.04 5.92 -2.91 -0.02 5.02 16 19 C 0.03 1.71 5.25 85.37 0.45 2.16 16 20 N -0.82 -43.61 11.14 21.88 0.24 -43.37 16 21 Si 0.98 41.11 29.57 68.60 2.03 43.14 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 25 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 26 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.10 2.00 8.11 -2.38 -0.02 1.98 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.41 13.73 5.86 -92.71 -0.54 13.19 16 32 H 0.12 4.30 6.44 -2.91 -0.02 4.28 16 33 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 34 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.10 5.50 6.59 -2.91 -0.02 5.48 16 36 H 0.29 13.82 8.29 -92.71 -0.77 13.05 16 Total: -1.00 -67.76 312.45 4.84 -62.92 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.57 Total: 31.64 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.45 Total: -11.75 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.96 Total: -71.87 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.25 Total: -54.08 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -67.76 4.84 -62.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.815 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds