Wall clock time and date at job start Mon Mar 30 2020 01:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21265 * 119.99846 * 2 1 4 4 C 1.47017 * 119.99562 * 180.02562 * 2 1 3 5 5 C 1.39968 * 120.08108 * 359.97438 * 4 2 1 6 6 C 1.37550 * 120.03901 * 179.97438 * 5 4 2 7 7 C 1.39748 * 120.20237 * 359.97438 * 6 5 4 8 8 C 1.48094 * 119.92397 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00200 * 200.63639 * 8 7 6 10 10 N 1.34780 * 119.99749 * 20.63508 * 8 7 6 11 11 C 1.46497 * 120.00101 * 7.00052 * 10 8 7 12 12 C 1.46497 * 119.99724 * 186.99830 * 10 8 7 13 13 C 1.50703 * 109.47307 * 269.99899 * 12 10 8 14 14 H 1.08004 * 120.00115 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00234 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00003 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99991 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47146 * 89.99966 * 17 15 13 19 19 H 1.48501 * 109.47448 * 210.00470 * 17 15 13 20 20 H 1.48506 * 109.47246 * 330.00230 * 17 15 13 21 21 C 1.39253 * 120.15436 * 0.24860 * 7 6 5 22 22 C 1.38618 * 119.96222 * 359.51550 * 21 7 6 23 23 O 1.35609 * 120.10474 * 180.22749 * 22 21 7 24 24 H 1.08998 * 109.47109 * 240.00068 * 1 2 3 25 25 H 1.09002 * 109.46734 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47448 * 119.99555 * 1 2 3 27 27 H 1.08000 * 119.98357 * 359.97438 * 5 4 2 28 28 H 1.08008 * 119.89968 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.47303 * 267.70324 * 11 10 8 30 30 H 1.09002 * 109.47082 * 27.70240 * 11 10 8 31 31 H 1.09004 * 109.47130 * 147.69551 * 11 10 8 32 32 H 1.09003 * 109.46680 * 150.00397 * 12 10 8 33 33 H 1.08991 * 109.47478 * 30.00275 * 12 10 8 34 34 H 0.97006 * 119.99928 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.02050 * 179.72673 * 21 7 6 36 36 H 0.96702 * 114.00665 * 270.25933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2420 -1.2733 -0.0006 5 6 1.5438 -2.4864 -0.0006 6 6 2.2324 -3.6771 -0.0016 7 6 3.6298 -3.6811 -0.0033 8 6 4.3649 -4.9668 -0.0038 9 8 5.5219 -5.0054 0.3657 10 7 3.7506 -6.0941 -0.4142 11 6 2.4108 -6.0255 -1.0028 12 6 4.4227 -7.3879 -0.2717 13 6 5.2279 -7.6752 -1.5128 14 1 5.2383 -6.9648 -2.3263 15 6 5.9513 -8.8449 -1.6099 16 7 6.6543 -9.0953 -2.6928 17 14 5.9339 -10.0733 -0.2028 18 1 4.8213 -11.0367 -0.4004 19 1 7.2245 -10.8073 -0.1704 20 1 5.7422 -9.3525 1.0814 21 6 4.3328 -2.4791 0.0014 22 6 3.6457 -1.2752 -0.0025 23 8 4.3273 -0.1029 -0.0026 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 0.4638 -2.4875 0.0003 28 1 1.6913 -4.6119 -0.0012 29 1 1.6633 -6.1624 -0.2216 30 1 2.2702 -5.0525 -1.4737 31 1 2.3022 -6.8104 -1.7513 32 1 3.6774 -8.1711 -0.1328 33 1 5.0856 -7.3597 0.5930 34 1 7.1629 -9.9185 -2.7613 35 1 5.4128 -2.4847 0.0046 36 1 4.5262 0.2367 0.8808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000662537052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:38 Heat of formation + Delta-G solvation = -87.660870 kcal Electronic energy + Delta-G solvation = -20955.154682 eV Core-core repulsion = 17597.901986 eV Total energy + Delta-G solvation = -3357.252697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77559 -40.67559 -39.15161 -37.71984 -36.84881 -34.77418 -33.24997 -31.54782 -30.53255 -29.75929 -27.82532 -25.99067 -24.02819 -23.49894 -21.16969 -20.91716 -19.33516 -19.16556 -17.87771 -17.68796 -17.42100 -16.89815 -16.28951 -16.15042 -15.85313 -15.65645 -15.41459 -15.10844 -14.97321 -14.44307 -14.20968 -13.80546 -13.69404 -13.34442 -13.27535 -13.03777 -12.93695 -12.87660 -12.43654 -12.26600 -12.06949 -11.78768 -11.76021 -10.99989 -10.82712 -10.58939 -10.21041 -9.78698 -9.48262 -8.34631 -6.41024 -0.76242 0.13794 1.12192 1.32741 1.38188 1.48465 1.86842 2.16160 2.31495 2.64909 2.98961 3.01400 3.12847 3.48579 3.68631 3.97946 4.18286 4.21956 4.31871 4.48640 4.57545 4.62935 4.76843 4.77691 4.78437 4.86631 4.96263 5.03661 5.09363 5.18389 5.35044 5.43284 5.50373 5.61262 6.20458 6.53435 6.56035 6.60946 6.65921 7.14481 7.27595 8.82748 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.036709 B = 0.003882 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.573214 B = 7211.538859 C = 7590.909738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.392 3.608 3 O -0.487 6.487 4 C -0.190 4.190 5 C -0.039 4.039 6 C -0.123 4.123 7 C -0.089 4.089 8 C 0.531 3.469 9 O -0.589 6.589 10 N -0.594 5.594 11 C 0.057 3.943 12 C 0.223 3.777 13 C -0.541 4.541 14 H 0.023 0.977 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.953 3.047 18 H -0.246 1.246 19 H -0.285 1.285 20 H -0.253 1.253 21 C -0.128 4.128 22 C 0.145 3.855 23 O -0.495 6.495 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.199 0.801 28 H 0.190 0.810 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.763 13.234 8.947 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.272 3.728 3 O -0.365 6.365 4 C -0.192 4.192 5 C -0.056 4.056 6 C -0.141 4.141 7 C -0.092 4.092 8 C 0.321 3.679 9 O -0.471 6.471 10 N -0.323 5.323 11 C -0.083 4.083 12 C 0.101 3.899 13 C -0.579 4.579 14 H 0.041 0.959 15 C -0.190 4.190 16 N -0.588 5.588 17 Si 0.775 3.225 18 H -0.170 1.170 19 H -0.211 1.211 20 H -0.177 1.177 21 C -0.148 4.148 22 C 0.099 3.901 23 O -0.308 6.308 24 H 0.143 0.857 25 H 0.102 0.898 26 H 0.139 0.861 27 H 0.216 0.784 28 H 0.206 0.794 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -19.797 13.561 8.440 25.437 hybrid contribution 1.582 -0.622 0.382 1.743 sum -18.214 12.939 8.822 24.021 Atomic orbital electron populations 1.22315 0.89271 1.06144 1.07148 1.23060 0.93699 0.86067 0.70009 1.90568 1.73350 1.35193 1.37371 1.21448 0.92712 0.97704 1.07358 1.21854 1.02603 0.88292 0.92897 1.22619 0.91294 1.02372 0.97801 1.19991 0.95720 0.91298 1.02227 1.19026 0.85902 0.84889 0.78120 1.90719 1.18808 1.86634 1.50897 1.47825 1.18930 1.06556 1.59027 1.22742 0.81636 1.04468 0.99501 1.19441 0.93224 0.81777 0.95431 1.21561 1.29653 1.04503 1.02198 0.95858 1.25937 0.93901 1.00332 0.98804 1.70070 1.31825 1.26822 1.30035 0.85642 0.78745 0.78727 0.79402 1.16958 1.21060 1.17661 1.21458 1.00764 0.91426 1.01122 1.18665 0.89927 0.84822 0.96681 1.84702 1.75796 1.35357 1.34951 0.85710 0.89817 0.86135 0.78374 0.79386 0.87509 0.88638 0.91125 0.91923 0.96094 0.92241 0.86569 0.73177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 8.92 71.24 0.64 -0.58 16 2 C 0.39 6.88 7.22 27.99 0.20 7.08 16 3 O -0.49 -12.80 15.88 18.04 0.29 -12.52 16 4 C -0.19 -3.68 5.88 -20.04 -0.12 -3.80 16 5 C -0.04 -0.49 9.45 22.53 0.21 -0.28 16 6 C -0.12 -2.28 7.60 22.47 0.17 -2.11 16 7 C -0.09 -2.73 5.56 -20.05 -0.11 -2.85 16 8 C 0.53 22.29 7.52 86.86 0.65 22.94 16 9 O -0.59 -31.16 16.16 -3.76 -0.06 -31.22 16 10 N -0.59 -23.31 2.86 -854.31 -2.44 -25.76 16 11 C 0.06 1.41 8.64 127.77 1.10 2.52 16 12 C 0.22 10.58 4.19 85.63 0.36 10.94 16 13 C -0.54 -31.91 9.94 25.60 0.25 -31.66 16 14 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 15 C 0.01 0.47 5.47 84.65 0.46 0.94 16 16 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 17 Si 0.95 43.62 27.47 68.60 1.88 45.51 16 18 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 21 C -0.13 -4.07 9.51 22.60 0.22 -3.85 16 22 C 0.14 3.86 6.72 22.88 0.15 4.01 16 23 O -0.49 -13.39 11.55 -68.18 -0.79 -14.18 16 24 H 0.12 0.09 8.08 -2.39 -0.02 0.07 16 25 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 26 H 0.12 0.22 8.08 -2.39 -0.02 0.20 16 27 H 0.20 0.27 7.03 -2.91 -0.02 0.25 16 28 H 0.19 2.39 3.99 -2.91 -0.01 2.38 16 29 H 0.11 1.57 6.89 -2.39 -0.02 1.56 16 30 H 0.10 1.97 5.39 -2.39 -0.01 1.96 16 31 H 0.07 1.89 8.09 -2.38 -0.02 1.87 16 32 H 0.06 2.56 7.50 -2.39 -0.02 2.55 16 33 H 0.02 1.08 6.59 -2.39 -0.02 1.07 16 34 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 35 H 0.12 4.25 7.77 -2.91 -0.02 4.22 16 36 H 0.41 7.63 9.06 -74.06 -0.67 6.96 16 Total: -1.00 -90.48 308.21 3.78 -86.70 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.40 Total: 8.18 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.19 Total: 3.30 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.14 Total: -85.77 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -0.56 Total: -57.92 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -90.48 3.78 -86.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000662537052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.957 kcal (2) G-P(sol) polarization free energy of solvation -90.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds