Wall clock time and date at job start Mon Mar 30 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47344 * 2 1 4 4 C 1.36676 * 120.00066 * 65.43731 * 3 2 1 5 5 H 1.07998 * 120.00232 * 235.75076 * 4 3 2 6 6 C 1.39191 * 119.99844 * 55.75360 * 4 3 2 7 7 N 1.31272 * 119.99996 * 37.43407 * 6 4 3 8 8 Si 1.86794 * 119.99858 * 217.43637 * 6 4 3 9 9 H 1.48490 * 109.47329 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47188 * 119.99772 * 8 6 4 11 11 H 1.48499 * 109.47122 * 239.99644 * 8 6 4 12 12 C 1.34778 * 119.99569 * 245.44494 * 3 2 1 13 13 O 1.21593 * 119.99605 * 191.43457 * 12 3 2 14 14 C 1.47883 * 120.00622 * 11.43097 * 12 3 2 15 15 C 1.39854 * 119.92280 * 29.55368 * 14 12 3 16 16 C 1.36490 * 120.31648 * 179.97438 * 15 14 12 17 17 C 1.40022 * 120.17218 * 0.02562 * 16 15 14 18 18 C 1.46922 * 120.07708 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99975 * 359.97438 * 18 17 16 20 20 O 1.21286 * 120.00427 * 180.02562 * 18 17 16 21 21 C 1.40441 * 119.85428 * 0.02562 * 17 16 15 22 22 O 1.35625 * 120.16251 * 179.97438 * 21 17 16 23 23 C 1.38570 * 119.68339 * 359.70334 * 21 17 16 24 24 H 1.08999 * 109.47112 * 97.73507 * 1 2 3 25 25 H 1.09004 * 109.46866 * 217.73070 * 1 2 3 26 26 H 1.09001 * 109.46848 * 337.72958 * 1 2 3 27 27 H 1.09003 * 109.47204 * 120.00063 * 2 1 3 28 28 H 1.09000 * 109.46836 * 239.99637 * 2 1 3 29 29 H 0.96994 * 119.99823 * 180.02562 * 7 6 4 30 30 H 1.07996 * 119.84336 * 359.97438 * 15 14 12 31 31 H 1.07999 * 119.91948 * 180.02562 * 16 15 14 32 32 H 1.09003 * 109.47017 * 90.00047 * 19 18 17 33 33 H 1.08994 * 109.47464 * 209.99908 * 19 18 17 34 34 H 1.09000 * 109.47071 * 330.00310 * 19 18 17 35 35 H 0.96695 * 113.99853 * 89.99399 * 22 21 17 36 36 H 1.08010 * 120.08980 * 180.29242 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7823 2.1895 1.0765 5 1 1.2813 3.1366 0.9411 6 6 2.1878 1.7921 2.3474 7 7 3.3211 1.1483 2.5034 8 14 1.1192 2.1748 3.8309 9 1 -0.0970 2.9038 3.3901 10 1 0.7232 0.9074 4.4959 11 1 1.8820 3.0177 4.7862 12 6 2.7003 1.8547 -1.0617 13 8 3.2828 2.9193 -0.9844 14 6 2.7403 1.0797 -2.3205 15 6 1.6681 0.2497 -2.6632 16 6 1.6964 -0.4688 -3.8233 17 6 2.8009 -0.3801 -4.6793 18 6 2.8294 -1.1549 -5.9273 19 6 1.6691 -2.0468 -6.2871 20 8 3.7870 -1.0775 -6.6675 21 6 3.8821 0.4502 -4.3417 22 8 4.9554 0.5404 -5.1660 23 6 3.8446 1.1814 -3.1652 24 1 -0.3633 -0.1383 -1.0183 25 1 -0.3633 -0.8128 0.6289 26 1 -0.3633 0.9510 0.3895 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.6035 0.8711 3.3889 30 1 0.8136 0.1770 -2.0067 31 1 0.8646 -1.1074 -4.0818 32 1 0.9423 -1.4803 -6.8693 33 1 2.0284 -2.8904 -6.8764 34 1 1.1974 -2.4147 -5.3759 35 1 4.8831 1.2388 -5.8308 36 1 4.6704 1.8256 -2.9015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000667135880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:21 Heat of formation + Delta-G solvation = -63.260448 kcal Electronic energy + Delta-G solvation = -21464.022590 eV Core-core repulsion = 18107.827975 eV Total energy + Delta-G solvation = -3356.194615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38603 -39.00414 -37.79044 -36.29426 -35.17621 -32.52759 -31.80327 -29.96426 -29.38091 -29.30328 -25.75087 -23.83790 -22.39329 -22.22080 -20.21611 -19.70170 -17.94995 -16.85142 -16.70953 -16.20114 -15.78227 -15.20902 -14.95634 -14.68804 -14.46768 -14.26324 -13.86483 -13.67394 -13.44518 -13.06564 -12.43377 -12.31557 -12.18187 -12.12081 -11.86409 -11.59051 -11.24054 -11.17296 -11.02306 -10.75885 -10.65751 -10.40233 -10.27121 -9.58722 -8.99801 -8.78437 -8.51364 -8.41444 -7.43407 -6.48700 -4.14215 0.56635 1.43476 2.36461 3.08092 3.21125 3.26538 3.51627 3.98867 4.06403 4.25850 4.29711 4.70355 4.74948 4.86429 4.96221 5.22143 5.29971 5.34714 5.45315 5.52197 5.62947 5.72414 5.86088 5.98682 6.03396 6.13082 6.28786 6.37855 6.45610 6.63552 6.70338 6.83732 6.93822 7.46051 7.55613 7.76984 8.29041 8.43347 9.10701 9.19287 9.93214 10.50013 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031753 B = 0.004708 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.588759 B = 5945.352369 C = 6524.297577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 N -0.426 5.426 4 C -0.342 4.342 5 H 0.086 0.914 6 C 0.068 3.932 7 N -0.819 5.819 8 Si 0.894 3.106 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.280 1.280 12 C 0.491 3.509 13 O -0.559 6.559 14 C -0.049 4.049 15 C -0.139 4.139 16 C -0.070 4.070 17 C -0.208 4.208 18 C 0.394 3.606 19 C -0.200 4.200 20 O -0.452 6.452 21 C 0.160 3.840 22 O -0.481 6.481 23 C -0.120 4.120 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.269 0.731 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 -7.002 -11.143 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.037 4.037 3 N -0.145 5.145 4 C -0.468 4.468 5 H 0.103 0.897 6 C -0.144 4.144 7 N -0.449 5.449 8 Si 0.719 3.281 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.280 3.720 13 O -0.441 6.441 14 C -0.052 4.052 15 C -0.157 4.157 16 C -0.088 4.088 17 C -0.210 4.210 18 C 0.272 3.728 19 C -0.256 4.256 20 O -0.328 6.328 21 C 0.114 3.886 22 O -0.291 6.291 23 C -0.140 4.140 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.249 0.751 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.777 -6.990 -10.989 14.247 hybrid contribution -0.570 0.355 0.732 0.993 sum -6.347 -6.635 -10.257 13.766 Atomic orbital electron populations 1.22255 0.96834 1.03398 1.00046 1.21906 0.93649 0.86159 1.01964 1.43240 1.46013 1.10432 1.14846 1.18977 1.39111 1.05065 0.83662 0.89652 1.25570 0.93417 0.95740 0.99688 1.70236 1.15498 1.34693 1.24500 0.86452 0.81571 0.78587 0.81536 1.18642 1.20295 1.20635 1.18631 0.81076 0.87695 0.84573 1.90645 1.45042 1.24538 1.83849 1.20765 0.93699 0.95239 0.95542 1.21802 1.00163 0.96471 0.97285 1.21007 0.96433 0.98197 0.93161 1.20893 0.96346 1.04773 0.99024 1.22303 0.86956 0.79644 0.83876 1.22233 0.98750 1.00745 1.03921 1.90546 1.33847 1.58906 1.49517 1.18578 0.85479 0.93901 0.90632 1.84731 1.37930 1.58933 1.47548 1.21579 0.99159 0.99411 0.93815 0.93434 0.92809 0.90348 0.91626 0.90988 0.92050 0.82921 0.84711 0.88683 0.89682 0.89499 0.75117 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.78 37.16 0.36 -2.29 16 2 C 0.09 1.70 5.37 -4.04 -0.02 1.68 16 3 N -0.43 -10.29 2.55 -115.88 -0.30 -10.58 16 4 C -0.34 -9.05 7.47 -15.04 -0.11 -9.16 16 5 H 0.09 2.34 8.04 -52.49 -0.42 1.92 16 6 C 0.07 1.77 4.81 -17.44 -0.08 1.68 16 7 N -0.82 -22.31 13.73 55.51 0.76 -21.54 16 8 Si 0.89 19.25 29.68 -169.99 -5.05 14.20 16 9 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 12 C 0.49 12.11 7.32 -12.31 -0.09 12.02 16 13 O -0.56 -16.04 16.68 5.28 0.09 -15.96 16 14 C -0.05 -0.95 5.34 -104.91 -0.56 -1.51 16 15 C -0.14 -2.15 7.32 -39.61 -0.29 -2.44 16 16 C -0.07 -0.88 9.29 -39.54 -0.37 -1.24 16 17 C -0.21 -2.95 5.88 -104.88 -0.62 -3.57 16 18 C 0.39 5.06 7.22 -30.79 -0.22 4.84 16 19 C -0.20 -1.64 9.75 36.01 0.35 -1.29 16 20 O -0.45 -7.20 15.89 -16.42 -0.26 -7.46 16 21 C 0.16 2.59 6.72 -38.63 -0.26 2.33 16 22 O -0.48 -7.40 11.56 -40.55 -0.47 -7.87 16 23 C -0.12 -2.21 9.53 -39.03 -0.37 -2.58 16 24 H 0.05 0.61 6.13 -51.93 -0.32 0.29 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.39 7.18 -51.93 -0.37 1.02 16 27 H 0.07 1.41 7.72 -51.93 -0.40 1.01 16 28 H 0.07 1.26 4.49 -51.93 -0.23 1.03 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.15 2.21 3.30 -52.49 -0.17 2.04 16 31 H 0.14 1.15 6.33 -52.49 -0.33 0.82 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.56 6.45 -51.93 -0.34 0.23 16 35 H 0.39 4.31 9.06 45.56 0.41 4.73 16 36 H 0.14 2.72 7.90 -52.48 -0.41 2.31 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -33.92 306.57 -5.87 -39.79 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.99 Total: 6.33 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.28 Total: -1.52 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.47 Total: -32.13 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.64 Total: -31.29 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.05 Total: 14.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.92 -5.87 -39.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000667135880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.467 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds