Wall clock time and date at job start Mon Mar 30 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47344 * 2 1 4 4 C 1.36676 * 120.00066 * 65.43731 * 3 2 1 5 5 H 1.07998 * 120.00232 * 235.75076 * 4 3 2 6 6 C 1.39191 * 119.99844 * 55.75360 * 4 3 2 7 7 N 1.31272 * 119.99996 * 37.43407 * 6 4 3 8 8 Si 1.86794 * 119.99858 * 217.43637 * 6 4 3 9 9 H 1.48490 * 109.47329 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47188 * 119.99772 * 8 6 4 11 11 H 1.48499 * 109.47122 * 239.99644 * 8 6 4 12 12 C 1.34778 * 119.99569 * 245.44494 * 3 2 1 13 13 O 1.21593 * 119.99605 * 191.43457 * 12 3 2 14 14 C 1.47883 * 120.00622 * 11.43097 * 12 3 2 15 15 C 1.39854 * 119.92280 * 29.55368 * 14 12 3 16 16 C 1.36490 * 120.31648 * 179.97438 * 15 14 12 17 17 C 1.40022 * 120.17218 * 0.02562 * 16 15 14 18 18 C 1.46922 * 120.07708 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99975 * 359.97438 * 18 17 16 20 20 O 1.21286 * 120.00427 * 180.02562 * 18 17 16 21 21 C 1.40441 * 119.85428 * 0.02562 * 17 16 15 22 22 O 1.35625 * 120.16251 * 179.97438 * 21 17 16 23 23 C 1.38570 * 119.68339 * 359.70334 * 21 17 16 24 24 H 1.08999 * 109.47112 * 97.73507 * 1 2 3 25 25 H 1.09004 * 109.46866 * 217.73070 * 1 2 3 26 26 H 1.09001 * 109.46848 * 337.72958 * 1 2 3 27 27 H 1.09003 * 109.47204 * 120.00063 * 2 1 3 28 28 H 1.09000 * 109.46836 * 239.99637 * 2 1 3 29 29 H 0.96994 * 119.99823 * 180.02562 * 7 6 4 30 30 H 1.07996 * 119.84336 * 359.97438 * 15 14 12 31 31 H 1.07999 * 119.91948 * 180.02562 * 16 15 14 32 32 H 1.09003 * 109.47017 * 90.00047 * 19 18 17 33 33 H 1.08994 * 109.47464 * 209.99908 * 19 18 17 34 34 H 1.09000 * 109.47071 * 330.00310 * 19 18 17 35 35 H 0.96695 * 113.99853 * 89.99399 * 22 21 17 36 36 H 1.08010 * 120.08980 * 180.29242 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7823 2.1895 1.0765 5 1 1.2813 3.1366 0.9411 6 6 2.1878 1.7921 2.3474 7 7 3.3211 1.1483 2.5034 8 14 1.1192 2.1748 3.8309 9 1 -0.0970 2.9038 3.3901 10 1 0.7232 0.9074 4.4959 11 1 1.8820 3.0177 4.7862 12 6 2.7003 1.8547 -1.0617 13 8 3.2828 2.9193 -0.9844 14 6 2.7403 1.0797 -2.3205 15 6 1.6681 0.2497 -2.6632 16 6 1.6964 -0.4688 -3.8233 17 6 2.8009 -0.3801 -4.6793 18 6 2.8294 -1.1549 -5.9273 19 6 1.6691 -2.0468 -6.2871 20 8 3.7870 -1.0775 -6.6675 21 6 3.8821 0.4502 -4.3417 22 8 4.9554 0.5404 -5.1660 23 6 3.8446 1.1814 -3.1652 24 1 -0.3633 -0.1383 -1.0183 25 1 -0.3633 -0.8128 0.6289 26 1 -0.3633 0.9510 0.3895 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.6035 0.8711 3.3889 30 1 0.8136 0.1770 -2.0067 31 1 0.8646 -1.1074 -4.0818 32 1 0.9423 -1.4803 -6.8693 33 1 2.0284 -2.8904 -6.8764 34 1 1.1974 -2.4147 -5.3759 35 1 4.8831 1.2388 -5.8308 36 1 4.6704 1.8256 -2.9015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000667135880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:21 Heat of formation + Delta-G solvation = -87.180939 kcal Electronic energy + Delta-G solvation = -21465.059860 eV Core-core repulsion = 18107.827975 eV Total energy + Delta-G solvation = -3357.231885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68817 -40.49623 -39.07731 -37.64260 -37.02495 -34.33690 -33.06533 -31.48441 -30.74887 -30.24561 -27.49387 -25.29527 -23.85993 -23.52260 -21.66176 -20.96703 -19.42382 -18.61748 -17.93189 -17.62500 -17.28210 -16.80952 -16.28346 -16.09436 -15.72840 -15.53766 -15.35117 -15.03833 -14.97433 -14.55246 -13.84609 -13.62003 -13.50994 -13.21651 -12.98976 -12.91842 -12.88418 -12.71147 -12.42631 -12.31734 -12.05841 -11.89199 -11.75711 -10.93062 -10.69354 -10.39987 -10.11326 -9.72789 -9.35758 -8.43187 -6.19266 -0.67365 0.19007 1.20636 1.37425 1.42686 1.57904 2.07064 2.28207 2.64128 2.82324 2.89688 3.09855 3.21461 3.71582 3.83942 4.04410 4.22598 4.26770 4.27004 4.49296 4.57103 4.66274 4.74339 4.74532 4.86954 5.02580 5.04585 5.16122 5.25642 5.30077 5.37374 5.46249 5.59401 5.64475 6.24326 6.57443 6.58583 6.67727 7.15459 7.31567 8.02439 8.56029 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031753 B = 0.004708 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.588759 B = 5945.352369 C = 6524.297577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.085 3.915 3 N -0.434 5.434 4 C -0.370 4.370 5 H 0.063 0.937 6 C 0.029 3.971 7 N -0.865 5.865 8 Si 0.968 3.032 9 H -0.255 1.255 10 H -0.260 1.260 11 H -0.285 1.285 12 C 0.475 3.525 13 O -0.622 6.622 14 C -0.075 4.075 15 C -0.133 4.133 16 C -0.039 4.039 17 C -0.201 4.201 18 C 0.395 3.605 19 C -0.192 4.192 20 O -0.488 6.488 21 C 0.153 3.847 22 O -0.493 6.493 23 C -0.139 4.139 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.275 0.725 30 H 0.168 0.832 31 H 0.197 0.803 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.408 0.592 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.226 -9.962 -12.634 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.037 4.037 3 N -0.152 5.152 4 C -0.496 4.496 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.497 5.497 8 Si 0.790 3.210 9 H -0.178 1.178 10 H -0.184 1.184 11 H -0.211 1.211 12 C 0.266 3.734 13 O -0.509 6.509 14 C -0.079 4.079 15 C -0.151 4.151 16 C -0.056 4.056 17 C -0.203 4.203 18 C 0.276 3.724 19 C -0.248 4.248 20 O -0.366 6.366 21 C 0.107 3.893 22 O -0.306 6.306 23 C -0.159 4.159 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.185 0.815 31 H 0.214 0.786 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.268 0.732 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.109 -9.982 -12.488 18.400 hybrid contribution 0.543 1.262 1.006 1.703 sum -8.566 -8.719 -11.481 16.770 Atomic orbital electron populations 1.22183 0.93357 1.03105 1.03029 1.22108 0.96478 0.83269 1.01855 1.43553 1.45756 1.11832 1.14109 1.18996 1.39969 1.05469 0.85205 0.91964 1.26444 0.93989 0.95306 1.02221 1.70291 1.17115 1.36717 1.25555 0.85338 0.79498 0.78931 0.77242 1.17836 1.18413 1.21099 1.19497 0.79956 0.87368 0.86560 1.90573 1.47539 1.27390 1.85396 1.20381 0.96164 0.97310 0.94011 1.21919 0.98882 0.95601 0.98677 1.21543 0.96959 0.96576 0.90530 1.21354 0.95566 1.03324 1.00054 1.22952 0.87858 0.79285 0.82350 1.22291 0.96831 0.99955 1.05763 1.90554 1.35740 1.60049 1.50273 1.18651 0.86516 0.94210 0.89922 1.84683 1.38246 1.59730 1.47911 1.21437 0.98689 1.00425 0.95302 0.89470 0.90401 0.92608 0.94128 0.88751 0.91542 0.81527 0.78645 0.86093 0.89026 0.86670 0.73220 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.78 71.98 0.70 -3.90 16 2 C 0.09 3.29 5.37 86.38 0.46 3.76 16 3 N -0.43 -21.81 2.55 -638.80 -1.63 -23.44 16 4 C -0.37 -20.50 7.47 84.17 0.63 -19.87 16 5 H 0.06 3.65 8.04 -2.91 -0.02 3.63 16 6 C 0.03 1.56 4.81 85.01 0.41 1.97 16 7 N -0.86 -48.93 13.73 21.70 0.30 -48.64 16 8 Si 0.97 40.30 29.68 68.60 2.04 42.34 16 9 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 10 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.48 24.83 7.32 86.80 0.64 25.47 16 13 O -0.62 -38.79 16.68 -4.01 -0.07 -38.86 16 14 C -0.08 -2.99 5.34 -20.05 -0.11 -3.10 16 15 C -0.13 -3.73 7.32 22.25 0.16 -3.56 16 16 C -0.04 -0.77 9.29 22.29 0.21 -0.56 16 17 C -0.20 -5.00 5.88 -20.03 -0.12 -5.12 16 18 C 0.40 8.54 7.22 27.96 0.20 8.74 16 19 C -0.19 -1.93 9.75 71.24 0.69 -1.23 16 20 O -0.49 -14.37 15.89 17.96 0.29 -14.09 16 21 C 0.15 4.90 6.72 22.89 0.15 5.05 16 22 O -0.49 -15.26 11.56 -68.37 -0.79 -16.05 16 23 C -0.14 -5.37 9.53 22.63 0.22 -5.16 16 24 H 0.09 1.80 6.13 -2.39 -0.01 1.79 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.90 7.18 -2.39 -0.02 1.89 16 27 H 0.04 1.76 7.72 -2.39 -0.02 1.74 16 28 H 0.09 3.15 4.49 -2.39 -0.01 3.14 16 29 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.17 4.17 3.30 -2.91 -0.01 4.16 16 31 H 0.20 1.60 6.33 -2.91 -0.02 1.58 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.54 6.45 -2.39 -0.02 0.52 16 35 H 0.41 9.10 9.06 -74.06 -0.67 8.43 16 36 H 0.11 4.85 7.90 -2.91 -0.02 4.83 16 Total: -1.00 -82.50 306.57 4.85 -77.64 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.47 Total: 18.61 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.25 Total: 2.47 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.33 Total: -72.07 kcal Atomic # 8 Polarization: -68.42 SS G_CDS: -0.57 Total: -68.99 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.04 Total: 42.34 kcal Total: -82.50 4.85 -77.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000667135880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.537 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds