Wall clock time and date at job start Mon Mar 30 2020 01:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.46717 * 2 1 4 4 C 1.46901 * 110.99850 * 72.64654 * 3 2 1 5 5 C 1.50702 * 109.46435 * 279.89622 * 4 3 2 6 6 H 1.07996 * 120.00597 * 354.37694 * 5 4 3 7 7 C 1.37889 * 119.99704 * 174.38569 * 5 4 3 8 8 N 1.31508 * 119.99904 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99897 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46840 * 89.99873 * 9 7 5 11 11 H 1.48497 * 109.47041 * 209.99659 * 9 7 5 12 12 H 1.48499 * 109.47249 * 330.00014 * 9 7 5 13 13 C 1.46901 * 110.99818 * 196.59167 * 3 2 1 14 14 H 1.09001 * 109.65191 * 199.85500 * 13 3 2 15 15 C 1.55099 * 109.65630 * 320.29978 * 13 3 2 16 16 S 1.83835 * 101.19364 * 161.71098 * 15 13 3 17 17 O 1.42100 * 109.61286 * 77.09858 * 16 15 13 18 18 O 1.42100 * 109.61615 * 210.86970 * 16 15 13 19 19 C 1.83246 * 95.53507 * 323.98318 * 16 15 13 20 20 C 1.52969 * 109.65062 * 79.53358 * 13 3 2 21 21 H 1.09001 * 108.93059 * 89.63135 * 20 13 3 22 22 O 1.42898 * 108.93341 * 330.96676 * 20 13 3 23 23 C 1.42897 * 113.99845 * 150.00003 * 22 20 13 24 24 H 1.09005 * 109.47027 * 285.81149 * 1 2 3 25 25 H 1.08997 * 109.47352 * 45.81459 * 1 2 3 26 26 H 1.08998 * 109.47144 * 165.81763 * 1 2 3 27 27 H 1.08995 * 109.47186 * 240.00348 * 2 1 3 28 28 H 1.08999 * 109.47143 * 120.00375 * 2 1 3 29 29 H 1.08995 * 109.47563 * 39.88997 * 4 3 2 30 30 H 1.08992 * 109.47462 * 159.89895 * 4 3 2 31 31 H 0.97003 * 120.00071 * 180.02562 * 8 7 5 32 32 H 1.09008 * 111.07469 * 43.73371 * 15 13 3 33 33 H 1.09006 * 111.11398 * 279.71113 * 15 13 3 34 34 H 1.09001 * 110.27136 * 139.35879 * 19 16 15 35 35 H 1.08998 * 110.27188 * 261.42576 * 19 16 15 36 36 H 1.09004 * 109.47398 * 299.99598 * 23 22 20 37 37 H 1.08999 * 109.47573 * 60.00277 * 23 22 20 38 38 H 1.09009 * 109.47119 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8094 2.0177 1.3090 5 6 0.3773 2.4730 1.4225 6 1 -0.2843 2.3916 0.5728 7 6 -0.0884 2.9936 2.6114 8 7 0.7170 3.0923 3.6463 9 14 -1.8634 3.5586 2.7519 10 1 -2.7094 2.4249 3.2040 11 1 -1.9536 4.6668 3.7363 12 1 -2.3382 4.0331 1.4273 13 6 3.4343 1.4433 -0.3916 14 1 3.8689 2.3851 -0.0564 15 6 4.2021 0.2574 0.2485 16 16 5.7143 0.2062 -0.7957 17 8 6.5973 1.2497 -0.4077 18 8 6.1874 -1.1307 -0.8848 19 6 4.8679 0.6645 -2.3550 20 6 3.5515 1.3383 -1.9132 21 1 3.5088 2.3398 -2.3412 22 8 2.4512 0.5747 -2.4114 23 6 2.0437 0.9362 -3.7325 24 1 -0.3633 0.2800 0.9888 25 1 -0.3634 0.7162 -0.7369 26 1 -0.3633 -0.9963 -0.2518 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0256 1.2987 2.0991 30 1 2.4727 2.8769 1.4081 31 1 0.3893 3.4583 4.4827 32 1 3.6345 -0.6692 0.1622 33 1 4.4509 0.4666 1.2889 34 1 5.4804 1.3623 -2.9261 35 1 4.6580 -0.2265 -2.9467 36 1 1.7407 1.9832 -3.7455 37 1 2.8751 0.7899 -4.4220 38 1 1.2041 0.3115 -4.0374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696847404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:37 Heat of formation + Delta-G solvation = -116.982281 kcal Electronic energy + Delta-G solvation = -21261.292676 eV Core-core repulsion = 18038.212459 eV Total energy + Delta-G solvation = -3223.080217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40069 -38.15406 -37.91161 -37.12031 -35.00018 -33.89633 -31.18891 -30.27254 -28.39702 -27.48544 -25.71478 -24.31031 -22.52962 -20.82940 -19.90976 -18.60551 -18.10810 -17.67278 -16.98831 -16.82531 -16.64049 -16.26544 -15.95812 -15.54078 -15.26964 -14.94377 -14.34777 -14.22381 -13.87895 -13.72984 -13.29606 -13.17557 -13.12577 -13.09805 -12.86230 -12.75825 -12.66071 -12.30884 -12.28089 -11.98956 -11.88107 -11.68200 -11.37239 -11.18340 -11.02219 -10.50210 -10.46377 -8.97458 -8.12511 -6.18161 -0.95801 1.42922 1.43527 1.50630 1.54387 2.43211 2.54589 2.75789 2.99144 3.10449 3.20226 3.50615 3.70801 3.84561 3.96042 4.14318 4.44874 4.50775 4.54148 4.64282 4.69926 4.74824 4.80084 4.95446 4.99993 5.05380 5.15769 5.23821 5.30411 5.49336 5.71219 5.79412 6.14578 6.31113 6.45451 6.67162 6.96957 7.48556 8.97527 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.005808 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.500886 B = 4819.781165 C = 5447.544889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.065 3.935 3 N -0.504 5.504 4 C 0.201 3.799 5 C -0.499 4.499 6 H 0.071 0.929 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.073 3.927 14 H 0.103 0.897 15 C -0.617 4.617 16 S 2.405 3.595 17 O -0.968 6.968 18 O -0.971 6.971 19 C -0.585 4.585 20 C 0.110 3.890 21 H 0.101 0.899 22 O -0.372 6.372 23 C 0.021 3.979 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.010 0.990 29 H -0.029 1.029 30 H 0.001 0.999 31 H 0.260 0.740 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -5.636 -15.386 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 N -0.227 5.227 4 C 0.074 3.926 5 C -0.538 4.538 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.039 4.039 14 H 0.121 0.879 15 C -0.747 4.747 16 S 2.591 3.409 17 O -0.965 6.965 18 O -0.968 6.968 19 C -0.717 4.717 20 C 0.049 3.951 21 H 0.119 0.881 22 O -0.290 6.290 23 C -0.075 4.075 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.029 0.971 29 H -0.011 1.011 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.190 0.810 35 H 0.187 0.813 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.920 -5.673 -15.235 17.301 hybrid contribution -1.017 0.405 1.183 1.612 sum 4.902 -5.268 -14.051 15.787 Atomic orbital electron populations 1.21728 0.95546 1.00183 1.01436 1.22184 0.96166 0.88284 0.99604 1.62001 1.12764 1.17884 1.30056 1.19588 0.96338 0.92271 0.84358 1.21547 0.96653 1.38564 0.97026 0.91136 1.25821 1.01745 0.96662 0.95679 1.70082 1.37279 1.47764 1.02941 0.85538 0.80210 0.77778 0.78044 1.20268 1.21411 1.18788 1.22640 0.91145 0.96692 0.93394 0.87950 1.31289 1.20431 1.08998 1.14021 1.08423 0.77551 0.74048 0.80837 1.93579 1.62451 1.58300 1.82141 1.93548 1.79956 1.37050 1.86252 1.30950 1.08518 1.13567 1.18703 1.22248 0.84384 0.96608 0.91817 0.88063 1.88024 1.49570 1.59390 1.31995 1.22985 1.00563 1.00670 0.83256 0.94341 0.92960 0.92139 0.87762 0.97137 1.01099 0.98063 0.93117 0.83177 0.85345 0.80956 0.81307 0.94089 0.92144 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.58 71.98 0.62 -4.17 16 2 C 0.06 2.29 3.61 86.30 0.31 2.60 16 3 N -0.50 -19.47 4.01 -871.37 -3.50 -22.96 16 4 C 0.20 10.02 4.68 85.56 0.40 10.42 16 5 C -0.50 -26.82 7.02 25.60 0.18 -26.64 16 6 H 0.07 3.71 6.40 -2.91 -0.02 3.69 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 8 N -0.94 -55.75 13.29 21.45 0.28 -55.47 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.07 2.21 2.52 45.62 0.11 2.33 16 14 H 0.10 3.19 7.47 -2.39 -0.02 3.18 16 15 C -0.62 -16.84 6.24 72.70 0.45 -16.38 16 16 S 2.41 56.12 6.03 -56.49 -0.34 55.78 16 17 O -0.97 -29.07 18.16 -127.50 -2.32 -31.38 16 18 O -0.97 -28.14 18.16 -127.50 -2.32 -30.46 16 19 C -0.58 -8.95 7.02 72.44 0.51 -8.44 16 20 C 0.11 2.40 3.02 31.04 0.09 2.49 16 21 H 0.10 1.95 7.77 -2.39 -0.02 1.93 16 22 O -0.37 -8.61 6.61 -148.98 -0.99 -9.59 16 23 C 0.02 0.36 10.78 113.37 1.22 1.58 16 24 H 0.04 1.65 6.49 -2.38 -0.02 1.63 16 25 H 0.05 1.94 7.65 -2.39 -0.02 1.92 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.10 3.10 5.19 -2.39 -0.01 3.09 16 28 H 0.01 0.39 6.75 -2.39 -0.02 0.38 16 29 H -0.03 -1.59 7.69 -2.39 -0.02 -1.61 16 30 H 0.00 0.07 7.47 -2.39 -0.02 0.05 16 31 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.15 3.90 5.69 -2.38 -0.01 3.89 16 33 H 0.13 3.73 8.14 -2.38 -0.02 3.71 16 34 H 0.17 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.17 1.96 7.93 -2.39 -0.02 1.95 16 36 H 0.04 0.73 8.07 -2.38 -0.02 0.71 16 37 H 0.06 0.71 8.09 -2.39 -0.02 0.69 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -73.38 309.57 -1.73 -75.11 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.05 Total: 9.14 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.36 Total: -35.87 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -3.21 Total: -78.43 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -5.62 Total: -71.44 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.34 Total: 55.78 kcal Total: -73.38 -1.73 -75.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696847404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.868 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds