Wall clock time and date at job start Mon Mar 30 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 N 1.41598 * 114.00410 * 2 1 4 4 C 1.29344 * 120.00144 * 180.02562 * 3 2 1 5 5 C 1.47611 * 119.99831 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.99847 * 179.97438 * 5 4 3 7 7 C 1.37642 * 120.00380 * 180.02562 * 6 5 4 8 8 C 1.39738 * 119.99642 * 0.26595 * 7 6 5 9 9 C 1.47675 * 120.00180 * 179.69738 * 8 7 6 10 10 O 1.21473 * 120.00026 * 359.97438 * 9 8 7 11 11 O 1.34724 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.45210 * 116.99615 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47437 * 330.00600 * 12 11 9 14 14 C 1.52997 * 109.46869 * 90.00499 * 12 11 9 15 15 C 1.50704 * 109.46920 * 210.00251 * 12 11 9 16 16 H 1.07991 * 120.00088 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99673 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00220 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00045 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47011 * 59.99976 * 19 17 15 21 21 H 1.48504 * 109.47207 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46902 * 299.99816 * 19 17 15 23 23 C 1.39749 * 119.99592 * 359.43585 * 8 7 6 24 24 C 1.37641 * 119.99578 * 0.57846 * 23 8 7 25 25 H 1.08995 * 109.47656 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47208 * 299.99864 * 1 2 3 27 27 H 1.09008 * 109.47239 * 59.99699 * 1 2 3 28 28 H 1.07991 * 120.00020 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.99745 * 0.02616 * 6 5 4 30 30 H 1.08002 * 119.99878 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.47112 * 300.00139 * 14 12 11 32 32 H 1.09005 * 109.47179 * 59.99659 * 14 12 11 33 33 H 1.08993 * 109.47259 * 179.97438 * 14 12 11 34 34 H 0.96997 * 120.00304 * 180.02562 * 18 17 15 35 35 H 1.08004 * 119.99994 * 180.25938 * 23 8 7 36 36 H 1.08001 * 119.99509 * 179.67467 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.2913 1.4287 -0.0005 5 6 3.8917 2.7771 0.0001 6 6 5.2813 2.9231 0.0001 7 6 5.8413 4.1805 0.0011 8 6 5.0200 5.3110 0.0078 9 6 5.6207 6.6601 0.0157 10 8 6.8287 6.7870 0.0169 11 8 4.8288 7.7500 0.0217 12 6 5.4881 9.0437 0.0299 13 1 6.4456 8.9604 0.5437 14 6 5.7205 9.5067 -1.4097 15 6 4.6193 10.0457 0.7457 16 1 3.6672 9.7407 1.1540 17 6 5.0401 11.3519 0.8793 18 7 6.1998 11.7233 0.3825 19 14 3.9630 12.5941 1.7660 20 1 3.7372 12.1452 3.1634 21 1 4.6373 13.9172 1.7744 22 1 2.6585 12.7073 1.0655 23 6 3.6301 5.1650 0.0015 24 6 3.0704 3.9075 0.0008 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.9260 0.5550 -0.0013 29 1 5.9160 2.0493 -0.0008 30 1 6.9154 4.2932 0.0016 31 1 6.3488 8.7820 -1.9275 32 1 4.7629 9.5901 -1.9237 33 1 6.2150 10.4780 -1.4037 34 1 6.4960 12.6421 0.4768 35 1 2.9953 6.0387 0.0025 36 1 1.9963 3.7947 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:26 Heat of formation + Delta-G solvation = -49.503905 kcal Electronic energy + Delta-G solvation = -20038.707346 eV Core-core repulsion = 16683.109259 eV Total energy + Delta-G solvation = -3355.598087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98729 -38.73705 -37.64235 -35.74524 -34.44320 -33.28045 -31.28163 -30.73143 -29.47151 -26.89349 -25.35599 -24.85029 -22.68843 -22.05830 -20.68194 -19.73763 -17.74834 -17.53777 -16.56680 -16.43727 -15.74469 -15.52164 -15.12104 -15.01616 -14.77819 -14.37606 -14.14305 -13.54495 -13.25588 -13.03873 -12.68159 -12.30165 -12.18044 -11.98794 -11.79072 -11.25782 -11.17723 -11.05880 -10.86265 -10.41341 -10.29665 -10.28047 -10.24015 -9.78869 -9.57192 -9.09048 -8.93891 -8.67561 -8.49959 -6.19583 -4.26804 0.30958 1.32014 1.95622 2.37386 3.10896 3.26011 3.29242 3.31224 3.56255 3.92893 4.31483 4.37063 4.69544 4.85934 5.02221 5.07653 5.07881 5.13359 5.23579 5.29253 5.32574 5.50503 5.73970 5.84385 5.95474 6.24731 6.26952 6.41097 6.62217 6.72946 6.87935 6.89089 7.11617 7.16653 7.56975 7.70265 7.89810 8.11310 8.57327 8.84426 9.38556 10.87837 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.003196 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.250571 B = 8757.748451 C = 9555.652419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.247 6.247 3 N -0.336 5.336 4 C 0.152 3.848 5 C -0.044 4.044 6 C -0.099 4.099 7 C -0.066 4.066 8 C -0.091 4.091 9 C 0.492 3.508 10 O -0.514 6.514 11 O -0.349 6.349 12 C 0.216 3.784 13 H 0.048 0.952 14 C -0.155 4.155 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.913 3.087 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.068 4.068 24 C -0.093 4.093 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.267 0.733 35 H 0.147 0.853 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 -19.725 -1.438 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.261 6.261 3 N -0.081 5.081 4 C -0.058 4.058 5 C -0.045 4.045 6 C -0.119 4.119 7 C -0.084 4.084 8 C -0.094 4.094 9 C 0.336 3.664 10 O -0.405 6.405 11 O -0.265 6.265 12 C 0.164 3.836 13 H 0.066 0.934 14 C -0.213 4.213 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.740 3.260 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.086 4.086 24 C -0.113 4.113 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.083 -19.272 -1.457 20.584 hybrid contribution 0.026 0.225 0.394 0.455 sum -7.057 -19.047 -1.063 20.340 Atomic orbital electron populations 1.22718 0.78557 1.02468 1.01382 1.89823 1.22311 1.20289 1.93665 1.76663 1.13884 1.04104 1.13454 1.24303 0.91971 0.96765 0.92771 1.18564 0.93207 0.90189 1.02585 1.21085 0.93058 0.97601 1.00135 1.21208 1.00891 0.90524 0.95821 1.19662 0.94158 0.91544 1.03993 1.21018 0.85505 0.86226 0.73605 1.90771 1.15717 1.87774 1.46265 1.86543 1.41697 1.16791 1.81518 1.20682 0.94342 0.73751 0.94839 0.93444 1.22170 0.99681 1.02969 0.96483 1.20977 1.05383 0.93145 1.36497 0.91294 1.24886 0.95461 0.98031 0.95578 1.69887 1.19504 1.18561 1.44720 0.86318 0.80113 0.79587 0.80026 1.19968 1.21032 1.19917 1.21578 0.94056 0.98223 0.94746 1.21347 1.00531 0.91109 0.98288 0.88638 0.93050 0.93067 0.85631 0.84542 0.83908 0.96448 0.94361 0.88163 0.92305 0.83528 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 11.47 101.05 1.16 1.51 16 2 O -0.25 -2.75 11.72 -11.47 -0.13 -2.88 16 3 N -0.34 -3.89 10.45 32.13 0.34 -3.55 16 4 C 0.15 1.51 10.90 -14.78 -0.16 1.34 16 5 C -0.04 -0.48 5.87 -104.96 -0.62 -1.09 16 6 C -0.10 -1.00 9.77 -39.24 -0.38 -1.38 16 7 C -0.07 -0.87 9.58 -39.24 -0.38 -1.24 16 8 C -0.09 -1.47 5.88 -104.92 -0.62 -2.09 16 9 C 0.49 10.38 7.87 34.58 0.27 10.66 16 10 O -0.51 -12.06 15.59 -19.24 -0.30 -12.36 16 11 O -0.35 -8.23 9.10 -40.56 -0.37 -8.60 16 12 C 0.22 5.77 2.56 -27.88 -0.07 5.70 16 13 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 14 C -0.16 -3.92 9.33 37.16 0.35 -3.58 16 15 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 16 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 19 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.07 -0.96 9.60 -39.23 -0.38 -1.33 16 24 C -0.09 -1.11 9.56 -39.24 -0.38 -1.49 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.14 1.81 7.64 -52.49 -0.40 1.41 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.15 2.08 7.60 -52.48 -0.40 1.68 16 36 H 0.14 1.51 7.54 -52.49 -0.40 1.11 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -31.66 324.56 -5.96 -37.62 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.39 Total: -0.33 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.60 Total: -6.21 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: 0.96 Total: -28.05 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.80 Total: -23.84 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.66 -5.96 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.887 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds