Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 N 1.41598 * 114.00410 * 2 1 4 4 C 1.29344 * 120.00144 * 180.02562 * 3 2 1 5 5 C 1.47611 * 119.99831 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.99847 * 179.97438 * 5 4 3 7 7 C 1.37642 * 120.00380 * 180.02562 * 6 5 4 8 8 C 1.39738 * 119.99642 * 0.26595 * 7 6 5 9 9 C 1.47675 * 120.00180 * 179.69738 * 8 7 6 10 10 O 1.21473 * 120.00026 * 359.97438 * 9 8 7 11 11 O 1.34724 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.45210 * 116.99615 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47437 * 330.00600 * 12 11 9 14 14 C 1.52997 * 109.46869 * 90.00499 * 12 11 9 15 15 C 1.50704 * 109.46920 * 210.00251 * 12 11 9 16 16 H 1.07991 * 120.00088 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99673 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00220 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00045 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47011 * 59.99976 * 19 17 15 21 21 H 1.48504 * 109.47207 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46902 * 299.99816 * 19 17 15 23 23 C 1.39749 * 119.99592 * 359.43585 * 8 7 6 24 24 C 1.37641 * 119.99578 * 0.57846 * 23 8 7 25 25 H 1.08995 * 109.47656 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47208 * 299.99864 * 1 2 3 27 27 H 1.09008 * 109.47239 * 59.99699 * 1 2 3 28 28 H 1.07991 * 120.00020 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.99745 * 0.02616 * 6 5 4 30 30 H 1.08002 * 119.99878 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.47112 * 300.00139 * 14 12 11 32 32 H 1.09005 * 109.47179 * 59.99659 * 14 12 11 33 33 H 1.08993 * 109.47259 * 179.97438 * 14 12 11 34 34 H 0.96997 * 120.00304 * 180.02562 * 18 17 15 35 35 H 1.08004 * 119.99994 * 180.25938 * 23 8 7 36 36 H 1.08001 * 119.99509 * 179.67467 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.2913 1.4287 -0.0005 5 6 3.8917 2.7771 0.0001 6 6 5.2813 2.9231 0.0001 7 6 5.8413 4.1805 0.0011 8 6 5.0200 5.3110 0.0078 9 6 5.6207 6.6601 0.0157 10 8 6.8287 6.7870 0.0169 11 8 4.8288 7.7500 0.0217 12 6 5.4881 9.0437 0.0299 13 1 6.4456 8.9604 0.5437 14 6 5.7205 9.5067 -1.4097 15 6 4.6193 10.0457 0.7457 16 1 3.6672 9.7407 1.1540 17 6 5.0401 11.3519 0.8793 18 7 6.1998 11.7233 0.3825 19 14 3.9630 12.5941 1.7660 20 1 3.7372 12.1452 3.1634 21 1 4.6373 13.9172 1.7744 22 1 2.6585 12.7073 1.0655 23 6 3.6301 5.1650 0.0015 24 6 3.0704 3.9075 0.0008 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.9260 0.5550 -0.0013 29 1 5.9160 2.0493 -0.0008 30 1 6.9154 4.2932 0.0016 31 1 6.3488 8.7820 -1.9275 32 1 4.7629 9.5901 -1.9237 33 1 6.2150 10.4780 -1.4037 34 1 6.4960 12.6421 0.4768 35 1 2.9953 6.0387 0.0025 36 1 1.9963 3.7947 0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = -67.756397 kcal Electronic energy + Delta-G solvation = -20039.498833 eV Core-core repulsion = 16683.109259 eV Total energy + Delta-G solvation = -3356.389574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48637 -39.98945 -38.44408 -37.56935 -35.43549 -35.23440 -32.39956 -31.87982 -31.29388 -27.64005 -27.45412 -26.01343 -23.73882 -23.57603 -22.03326 -21.13643 -19.25901 -18.65346 -18.22549 -17.81876 -17.10212 -16.81606 -16.53703 -16.21938 -15.94548 -15.56384 -15.32288 -14.77831 -14.45768 -14.38711 -14.09098 -13.86906 -13.29115 -13.23539 -13.12057 -12.95594 -12.83580 -12.79746 -12.40248 -12.18405 -12.14057 -11.61612 -11.49357 -11.11934 -11.01955 -10.99018 -10.60331 -10.06176 -9.66348 -8.29112 -6.46272 -0.74068 0.35125 0.95602 1.41995 1.46078 1.53929 1.64014 1.77592 1.93803 2.41023 2.80767 3.01575 3.54912 3.70901 3.90740 3.95291 4.22240 4.28726 4.46032 4.50904 4.51770 4.56944 4.71221 4.77428 4.78702 4.81418 4.98644 5.03509 5.11283 5.24063 5.33574 5.41062 5.47323 5.60883 5.73933 5.88415 6.04102 6.42415 6.57831 6.89374 7.25053 8.78564 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.003196 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.250571 B = 8757.748451 C = 9555.652419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.259 6.259 3 N -0.359 5.359 4 C 0.156 3.844 5 C -0.030 4.030 6 C -0.076 4.076 7 C -0.066 4.066 8 C -0.121 4.121 9 C 0.488 3.512 10 O -0.548 6.548 11 O -0.356 6.356 12 C 0.218 3.782 13 H 0.009 0.991 14 C -0.142 4.142 15 C -0.550 4.550 16 H 0.068 0.932 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.984 3.016 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.072 4.072 24 C -0.093 4.093 25 H 0.122 0.878 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.159 0.841 29 H 0.184 0.816 30 H 0.144 0.856 31 H 0.023 0.977 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.272 0.728 35 H 0.137 0.863 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 -21.896 -1.186 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 N -0.105 5.105 4 C -0.053 4.053 5 C -0.031 4.031 6 C -0.096 4.096 7 C -0.084 4.084 8 C -0.123 4.123 9 C 0.334 3.666 10 O -0.441 6.441 11 O -0.272 6.272 12 C 0.165 3.835 13 H 0.026 0.974 14 C -0.200 4.200 15 C -0.587 4.587 16 H 0.087 0.913 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.090 4.090 24 C -0.112 4.112 25 H 0.140 0.860 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.176 0.824 29 H 0.201 0.799 30 H 0.162 0.838 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.348 -21.466 -1.213 23.064 hybrid contribution 0.389 0.712 0.305 0.867 sum -7.960 -20.754 -0.908 22.247 Atomic orbital electron populations 1.22958 0.77076 1.04263 1.01388 1.89800 1.23944 1.19918 1.93738 1.76616 1.14964 1.04964 1.13910 1.24432 0.92146 0.96896 0.91834 1.18778 0.93504 0.90434 1.00429 1.21451 0.93162 0.97596 0.97355 1.21342 1.00791 0.90745 0.95537 1.19489 0.95257 0.89270 1.08290 1.21959 0.85245 0.87225 0.72143 1.90735 1.17044 1.88255 1.48057 1.86529 1.41857 1.16613 1.82205 1.20390 0.92757 0.75360 0.95021 0.97364 1.21993 0.99975 1.02084 0.95977 1.21260 1.05694 0.94120 1.37638 0.91331 1.25841 0.96761 0.99783 0.95964 1.70008 1.20954 1.19219 1.45253 0.85219 0.78451 0.76843 0.78813 1.19340 1.20190 1.18778 1.21480 0.93101 0.99061 0.95348 1.21434 1.01247 0.90584 0.97956 0.85975 0.93062 0.93032 0.82377 0.79918 0.83802 0.95754 0.93485 0.89896 0.91924 0.84530 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.47 113.37 1.30 1.81 16 2 O -0.26 -5.09 11.72 -38.78 -0.45 -5.55 16 3 N -0.36 -7.32 10.45 -52.27 -0.55 -7.87 16 4 C 0.16 2.51 10.90 87.54 0.95 3.46 16 5 C -0.03 -0.55 5.87 -20.08 -0.12 -0.67 16 6 C -0.08 -1.26 9.77 22.49 0.22 -1.04 16 7 C -0.07 -1.64 9.58 22.49 0.22 -1.42 16 8 C -0.12 -3.94 5.88 -20.06 -0.12 -4.06 16 9 C 0.49 21.52 7.87 70.32 0.55 22.07 16 10 O -0.55 -27.05 15.59 19.92 0.31 -26.74 16 11 O -0.36 -17.58 9.10 -56.34 -0.51 -18.09 16 12 C 0.22 12.19 2.56 29.85 0.08 12.27 16 13 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 14 C -0.14 -7.47 9.33 71.98 0.67 -6.80 16 15 C -0.55 -31.48 8.90 25.60 0.23 -31.25 16 16 H 0.07 3.82 7.81 -2.92 -0.02 3.80 16 17 C 0.02 0.90 5.30 84.65 0.45 1.35 16 18 N -0.92 -52.90 11.32 21.45 0.24 -52.66 16 19 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 23 C -0.07 -2.02 9.60 22.49 0.22 -1.80 16 24 C -0.09 -2.06 9.56 22.49 0.21 -1.85 16 25 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.16 1.53 8.06 -2.92 -0.02 1.51 16 29 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 30 H 0.14 3.53 7.64 -2.91 -0.02 3.51 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.08 4.63 6.07 -2.39 -0.01 4.61 16 34 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.14 4.03 7.60 -2.91 -0.02 4.01 16 36 H 0.15 3.00 7.54 -2.91 -0.02 2.97 16 Total: -1.00 -71.03 324.56 7.01 -64.02 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.09 Total: 9.83 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.86 Total: -7.93 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.30 Total: -60.53 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.66 Total: -50.38 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.03 7.01 -64.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.739 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds