Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00009 * 2 1 4 4 H 1.07999 * 120.00373 * 202.58907 * 3 2 1 5 5 C 1.38814 * 119.99845 * 22.57957 * 3 2 1 6 6 N 1.31619 * 120.00014 * 11.16557 * 5 3 2 7 7 Si 1.86802 * 120.00165 * 191.15706 * 5 3 2 8 8 H 1.48505 * 109.46827 * 60.00436 * 7 5 3 9 9 H 1.48496 * 109.47408 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47196 * 300.01009 * 7 5 3 11 11 C 1.46495 * 119.99782 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47194 * 269.99731 * 11 2 1 13 13 C 1.38305 * 119.89102 * 105.00485 * 12 11 2 14 14 C 1.38016 * 120.14374 * 179.97438 * 13 12 11 15 15 C 1.39322 * 119.93103 * 359.97438 * 14 13 12 16 16 C 1.48476 * 120.10485 * 179.97438 * 15 14 13 17 17 N 1.34043 * 126.66651 * 359.69036 * 16 15 14 18 18 N 1.28989 * 107.26133 * 179.83519 * 17 16 15 19 19 N 1.28726 * 108.94748 * 0.43213 * 18 17 16 20 20 H 0.96998 * 125.34720 * 179.74943 * 19 18 17 21 21 N 1.28871 * 109.31487 * 359.72333 * 19 18 17 22 22 C 1.39246 * 119.79662 * 359.97438 * 15 14 13 23 23 C 1.38282 * 119.85026 * 359.74965 * 22 15 14 24 24 F 1.35098 * 119.96814 * 180.25581 * 23 22 15 25 25 H 1.09001 * 109.47155 * 274.24528 * 1 2 3 26 26 H 1.08995 * 109.47177 * 34.24973 * 1 2 3 27 27 H 1.09009 * 109.46672 * 154.24740 * 1 2 3 28 28 H 0.97003 * 120.00378 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47808 * 30.00539 * 11 2 1 30 30 H 1.09004 * 109.46884 * 150.00757 * 11 2 1 31 31 H 1.07996 * 119.92493 * 359.95741 * 13 12 11 32 32 H 1.07998 * 120.03256 * 179.97438 * 14 13 12 33 33 H 1.07996 * 120.07812 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1676 1.2218 -0.3593 5 6 1.5354 2.3420 0.4616 6 7 0.3863 2.2671 1.0989 7 14 2.3398 4.0040 0.1785 8 1 2.4936 4.2374 -1.2800 9 1 1.4898 5.0715 0.7641 10 1 3.6758 4.0242 0.8265 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.7069 -2.7344 1.9684 14 6 1.9330 -3.1368 3.2691 15 6 2.9109 -2.5032 4.0328 16 6 3.1570 -2.9326 5.4326 17 7 2.5166 -3.9057 6.0957 18 7 3.0287 -3.9643 7.2781 19 7 3.9478 -3.0688 7.3804 20 1 4.4843 -2.9031 8.1713 21 7 4.0436 -2.4273 6.2668 22 6 3.6570 -1.4659 3.4792 23 6 3.4271 -1.0736 2.1733 24 9 4.1530 -0.0710 1.6321 25 1 -0.3633 0.0761 1.0248 26 1 -0.3633 0.8494 -0.5783 27 1 -0.3633 -0.9257 -0.4466 28 1 -0.0429 3.0749 1.4218 29 1 1.6085 -2.0286 -0.5130 30 1 3.1500 -1.1386 -0.5132 31 1 0.9489 -3.2256 1.3764 32 1 1.3524 -3.9420 3.6945 33 1 4.4159 -0.9713 4.0672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736778290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = 131.396792 kcal Electronic energy + Delta-G solvation = -20880.741718 eV Core-core repulsion = 17474.113271 eV Total energy + Delta-G solvation = -3406.628447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.01645 -44.42440 -38.70350 -35.70977 -34.31797 -33.50203 -31.73758 -30.27793 -29.89156 -26.51400 -25.78261 -24.64318 -23.58273 -22.12591 -21.58351 -20.36308 -19.17916 -17.11888 -16.98258 -16.79858 -15.72789 -15.42098 -15.02562 -14.71890 -14.23470 -13.90133 -13.54025 -13.29372 -13.19155 -12.57961 -12.44376 -12.27329 -11.96287 -11.59049 -11.34070 -11.16261 -10.99515 -10.89355 -10.77951 -10.64232 -10.55434 -10.29813 -10.03533 -9.88494 -8.57898 -8.46585 -8.00841 -6.84311 -5.77516 -3.18968 0.85544 1.25219 1.69704 2.23037 2.50748 3.39869 3.43949 3.45508 3.73951 4.05798 4.23636 4.50342 4.98896 5.19308 5.27416 5.35340 5.47110 5.51241 5.61023 5.62042 5.80941 6.11707 6.15958 6.33903 6.50847 6.55752 6.57959 6.69386 6.73005 6.92975 7.33744 7.36638 7.70273 7.81029 8.16175 8.33894 9.18188 9.78624 10.26435 11.26831 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.004896 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.219805 B = 5717.622751 C = 6182.352351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.245 4.245 4 H 0.074 0.926 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.905 3.095 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.177 3.823 12 C -0.096 4.096 13 C -0.100 4.100 14 C -0.088 4.088 15 C -0.024 4.024 16 C 0.236 3.764 17 N -0.270 5.270 18 N -0.056 5.056 19 N -0.232 5.232 20 H 0.473 0.527 21 N -0.298 5.298 22 C -0.120 4.120 23 C 0.120 3.880 24 F -0.123 7.123 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.000 1.000 28 H 0.254 0.746 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 -11.112 7.581 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.305 5.305 3 C -0.375 4.375 4 H 0.092 0.908 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.049 3.951 12 C -0.103 4.103 13 C -0.119 4.119 14 C -0.109 4.109 15 C -0.029 4.029 16 C -0.044 4.044 17 N -0.143 5.143 18 N -0.051 5.051 19 N -0.078 5.078 20 H 0.327 0.673 21 N -0.150 5.150 22 C -0.142 4.142 23 C 0.100 3.900 24 F -0.101 7.101 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.361 -11.239 8.115 14.863 hybrid contribution 0.873 1.661 0.417 1.922 sum 6.234 -9.577 8.532 14.261 Atomic orbital electron populations 1.20879 0.81930 0.95932 0.99564 1.44281 1.02185 1.00299 1.83779 1.19283 0.98443 0.84724 1.35008 0.90817 1.25085 0.97603 0.98776 0.98058 1.70060 1.17674 1.27475 1.39517 0.86311 0.78745 0.83466 0.77980 1.20882 1.21617 1.20691 1.20049 0.97164 0.89085 0.88765 1.21548 0.92821 0.93533 1.02380 1.20773 0.99646 0.96791 0.94673 1.21026 0.96460 0.99628 0.93787 1.16718 1.00534 0.99154 0.86472 1.23705 0.91471 0.92616 0.96564 1.76063 1.22103 1.18185 0.97992 1.78852 1.01219 1.10365 1.14711 1.47688 1.26074 1.21288 1.12721 0.67311 1.74982 1.24219 1.21647 0.94145 1.20951 1.01273 0.97728 0.94203 1.17205 0.93075 0.88309 0.91417 1.91546 1.75298 1.57529 1.85710 0.95184 0.93247 0.98139 0.93563 0.92512 0.92259 0.85066 0.85009 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 9.01 59.85 0.54 4.40 16 2 N -0.59 -14.35 2.91 -182.50 -0.53 -14.88 16 3 C -0.25 -6.60 8.29 -15.06 -0.12 -6.72 16 4 H 0.07 1.97 7.66 -52.49 -0.40 1.57 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.90 -26.12 10.59 55.49 0.59 -25.54 16 7 Si 0.91 21.94 29.57 -169.99 -5.03 16.92 16 8 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.18 3.52 5.56 -5.20 -0.03 3.49 16 12 C -0.10 -1.83 5.47 -104.50 -0.57 -2.40 16 13 C -0.10 -1.60 9.65 -39.64 -0.38 -1.99 16 14 C -0.09 -1.36 9.70 -39.26 -0.38 -1.74 16 15 C -0.02 -0.40 5.87 -104.90 -0.62 -1.02 16 16 C 0.24 3.62 7.94 -156.31 -1.24 2.38 16 17 N -0.27 -4.03 12.23 32.16 0.39 -3.64 16 18 N -0.06 -0.70 13.47 60.35 0.81 0.11 16 19 N -0.23 -2.35 7.90 60.35 0.48 -1.87 16 20 H 0.47 2.30 8.96 -340.37 -3.05 -0.75 16 21 N -0.30 -4.04 12.08 32.17 0.39 -3.65 16 22 C -0.12 -2.12 9.68 -39.19 -0.38 -2.50 16 23 C 0.12 2.39 7.20 -39.46 -0.28 2.11 16 24 F -0.12 -2.69 15.19 2.25 0.03 -2.66 16 25 H 0.03 0.79 7.41 -51.93 -0.38 0.40 16 26 H 0.05 1.27 7.20 -51.93 -0.37 0.90 16 27 H 0.00 0.00 7.84 -51.92 -0.41 -0.41 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 30 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 31 H 0.13 1.79 7.99 -52.49 -0.42 1.37 16 32 H 0.13 1.78 7.89 -52.49 -0.41 1.36 16 33 H 0.13 2.20 7.88 -52.49 -0.41 1.78 16 LS Contribution 295.53 15.07 4.45 4.45 Total: -1.00 -31.93 295.53 -7.78 -39.71 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -5.81 Total: -4.98 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.56 Total: -3.98 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 2.13 Total: -49.47 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.03 Total: -2.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.93 -7.78 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736778290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.108 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds