Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00009 * 2 1 4 4 H 1.07999 * 120.00373 * 202.58907 * 3 2 1 5 5 C 1.38814 * 119.99845 * 22.57957 * 3 2 1 6 6 N 1.31619 * 120.00014 * 11.16557 * 5 3 2 7 7 Si 1.86802 * 120.00165 * 191.15706 * 5 3 2 8 8 H 1.48505 * 109.46827 * 60.00436 * 7 5 3 9 9 H 1.48496 * 109.47408 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47196 * 300.01009 * 7 5 3 11 11 C 1.46495 * 119.99782 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47194 * 269.99731 * 11 2 1 13 13 C 1.38305 * 119.89102 * 105.00485 * 12 11 2 14 14 C 1.38016 * 120.14374 * 179.97438 * 13 12 11 15 15 C 1.39322 * 119.93103 * 359.97438 * 14 13 12 16 16 C 1.48476 * 120.10485 * 179.97438 * 15 14 13 17 17 N 1.34043 * 126.66651 * 359.69036 * 16 15 14 18 18 N 1.28989 * 107.26133 * 179.83519 * 17 16 15 19 19 N 1.28726 * 108.94748 * 0.43213 * 18 17 16 20 20 H 0.96998 * 125.34720 * 179.74943 * 19 18 17 21 21 N 1.28871 * 109.31487 * 359.72333 * 19 18 17 22 22 C 1.39246 * 119.79662 * 359.97438 * 15 14 13 23 23 C 1.38282 * 119.85026 * 359.74965 * 22 15 14 24 24 F 1.35098 * 119.96814 * 180.25581 * 23 22 15 25 25 H 1.09001 * 109.47155 * 274.24528 * 1 2 3 26 26 H 1.08995 * 109.47177 * 34.24973 * 1 2 3 27 27 H 1.09009 * 109.46672 * 154.24740 * 1 2 3 28 28 H 0.97003 * 120.00378 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47808 * 30.00539 * 11 2 1 30 30 H 1.09004 * 109.46884 * 150.00757 * 11 2 1 31 31 H 1.07996 * 119.92493 * 359.95741 * 13 12 11 32 32 H 1.07998 * 120.03256 * 179.97438 * 14 13 12 33 33 H 1.07996 * 120.07812 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1676 1.2218 -0.3593 5 6 1.5354 2.3420 0.4616 6 7 0.3863 2.2671 1.0989 7 14 2.3398 4.0040 0.1785 8 1 2.4936 4.2374 -1.2800 9 1 1.4898 5.0715 0.7641 10 1 3.6758 4.0242 0.8265 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7031 1.4216 13 6 1.7069 -2.7344 1.9684 14 6 1.9330 -3.1368 3.2691 15 6 2.9109 -2.5032 4.0328 16 6 3.1570 -2.9326 5.4326 17 7 2.5166 -3.9057 6.0957 18 7 3.0287 -3.9643 7.2781 19 7 3.9478 -3.0688 7.3804 20 1 4.4843 -2.9031 8.1713 21 7 4.0436 -2.4273 6.2668 22 6 3.6570 -1.4659 3.4792 23 6 3.4271 -1.0736 2.1733 24 9 4.1530 -0.0710 1.6321 25 1 -0.3633 0.0761 1.0248 26 1 -0.3633 0.8494 -0.5783 27 1 -0.3633 -0.9257 -0.4466 28 1 -0.0429 3.0749 1.4218 29 1 1.6085 -2.0286 -0.5130 30 1 3.1500 -1.1386 -0.5132 31 1 0.9489 -3.2256 1.3764 32 1 1.3524 -3.9420 3.6945 33 1 4.4159 -0.9713 4.0672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736778290.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = 110.723389 kcal Electronic energy + Delta-G solvation = -20881.638184 eV Core-core repulsion = 17474.113271 eV Total energy + Delta-G solvation = -3407.524913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.61284 -45.48157 -40.07942 -37.45232 -35.43163 -34.75624 -33.41975 -31.73547 -31.36830 -28.12528 -27.65257 -25.72642 -24.97465 -23.51701 -23.08944 -21.88015 -20.24569 -18.74622 -18.31559 -18.15921 -17.20330 -17.01046 -16.63945 -16.31642 -15.74981 -15.41208 -15.05019 -14.98166 -14.65726 -14.13425 -13.85728 -13.58535 -13.41165 -13.13357 -12.79962 -12.68182 -12.45542 -12.43342 -12.37395 -12.20933 -12.00157 -11.96914 -11.77530 -11.69452 -10.60277 -9.80675 -9.41904 -8.78531 -7.80607 -5.26125 -0.34896 0.16050 0.32737 1.26584 1.40485 1.46165 1.47679 1.53483 2.51604 2.58109 2.73622 3.09008 3.35216 3.62740 3.82154 3.92285 3.98804 4.14162 4.27232 4.39454 4.44199 4.68305 4.83488 4.92182 5.00108 5.19559 5.21921 5.36298 5.40083 5.52797 5.60742 5.68930 5.78920 5.96239 6.35693 7.09350 7.18657 7.88168 8.29528 9.22315 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.004896 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.219805 B = 5717.622751 C = 6182.352351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.606 5.606 3 C -0.243 4.243 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.957 3.043 8 H -0.275 1.275 9 H -0.295 1.295 10 H -0.282 1.282 11 C 0.176 3.824 12 C -0.113 4.113 13 C -0.087 4.087 14 C -0.082 4.082 15 C -0.016 4.016 16 C 0.217 3.783 17 N -0.285 5.285 18 N -0.052 5.052 19 N -0.200 5.200 20 H 0.495 0.505 21 N -0.301 5.301 22 C -0.126 4.126 23 C 0.091 3.909 24 F -0.144 7.144 25 H 0.001 0.999 26 H 0.019 0.981 27 H 0.040 0.960 28 H 0.246 0.754 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 -13.154 8.635 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.327 5.327 3 C -0.374 4.374 4 H 0.086 0.914 5 C -0.245 4.245 6 N -0.584 5.584 7 Si 0.786 3.214 8 H -0.201 1.201 9 H -0.221 1.221 10 H -0.208 1.208 11 C 0.050 3.950 12 C -0.118 4.118 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.020 4.020 16 C -0.062 4.062 17 N -0.157 5.157 18 N -0.047 5.047 19 N -0.050 5.050 20 H 0.354 0.646 21 N -0.153 5.153 22 C -0.147 4.147 23 C 0.071 3.929 24 F -0.122 7.122 25 H 0.019 0.981 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.737 -13.335 9.197 17.185 hybrid contribution 0.908 2.031 0.272 2.241 sum 6.645 -11.304 9.470 16.175 Atomic orbital electron populations 1.20603 0.82022 0.96576 0.97587 1.44326 1.02400 1.01136 1.84838 1.19408 0.97945 0.86162 1.33864 0.91448 1.25676 0.98398 1.01474 0.98916 1.70215 1.19128 1.27283 1.41749 0.85493 0.77617 0.80306 0.78030 1.20097 1.22100 1.20782 1.20131 0.97087 0.88028 0.89720 1.21506 0.93813 0.95190 1.01313 1.21121 0.98888 0.95474 0.95091 1.21341 0.95857 0.99630 0.93403 1.16912 0.99771 0.98114 0.87203 1.23544 0.92595 0.93597 0.96509 1.76048 1.22708 1.18370 0.98615 1.78807 1.01463 1.10580 1.13899 1.47747 1.25047 1.19619 1.12636 0.64614 1.74944 1.23791 1.21761 0.94800 1.21008 1.01830 0.98282 0.93551 1.17613 0.94085 0.88542 0.92621 1.91484 1.75921 1.58662 1.86142 0.98092 0.96207 0.94154 0.94506 0.89164 0.92676 0.81903 0.82464 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.45 9.01 127.77 1.15 9.60 16 2 N -0.61 -29.60 2.91 -731.30 -2.13 -31.73 16 3 C -0.24 -13.32 8.29 84.03 0.70 -12.63 16 4 H 0.07 3.68 7.66 -2.91 -0.02 3.66 16 5 C -0.05 -2.82 5.13 84.86 0.44 -2.39 16 6 N -0.94 -55.85 10.59 21.65 0.23 -55.62 16 7 Si 0.96 46.18 29.57 68.60 2.03 48.21 16 8 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 C 0.18 6.79 5.56 85.63 0.48 7.27 16 12 C -0.11 -4.14 5.47 -19.78 -0.11 -4.25 16 13 C -0.09 -2.55 9.65 22.23 0.21 -2.33 16 14 C -0.08 -2.29 9.70 22.48 0.22 -2.07 16 15 C -0.02 -0.50 5.87 -20.04 -0.12 -0.61 16 16 C 0.22 6.16 7.94 137.39 1.09 7.25 16 17 N -0.28 -7.73 12.23 -52.18 -0.64 -8.37 16 18 N -0.05 -1.16 13.47 37.02 0.50 -0.67 16 19 N -0.20 -3.44 7.90 37.02 0.29 -3.15 16 20 H 0.49 3.18 8.96 -347.54 -3.12 0.07 16 21 N -0.30 -7.39 12.08 -52.12 -0.63 -8.02 16 22 C -0.13 -4.33 9.68 22.52 0.22 -4.11 16 23 C 0.09 3.62 7.20 22.35 0.16 3.78 16 24 F -0.14 -6.45 15.19 44.97 0.68 -5.77 16 25 H 0.00 0.04 7.41 -2.39 -0.02 0.02 16 26 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 27 H 0.04 1.56 7.84 -2.38 -0.02 1.54 16 28 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.09 2.82 7.67 -2.39 -0.02 2.80 16 30 H 0.05 2.14 7.96 -2.38 -0.02 2.13 16 31 H 0.16 3.71 7.99 -2.91 -0.02 3.69 16 32 H 0.16 3.62 7.89 -2.91 -0.02 3.60 16 33 H 0.14 4.53 7.88 -2.91 -0.02 4.50 16 Total: -1.00 -70.16 295.53 2.82 -67.33 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -1.95 Total: -1.73 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 4.44 Total: -0.50 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -2.37 Total: -107.55 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.68 Total: -5.77 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -70.16 2.82 -67.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736778290.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.056 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds