Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37093 * 119.99557 * 2 1 4 4 H 1.08007 * 119.99943 * 202.40374 * 3 2 1 5 5 C 1.38948 * 120.00382 * 22.41039 * 3 2 1 6 6 N 1.31419 * 119.99823 * 11.59113 * 5 3 2 7 7 Si 1.86802 * 120.00305 * 191.59494 * 5 3 2 8 8 H 1.48497 * 109.46966 * 59.99417 * 7 5 3 9 9 H 1.48496 * 109.47236 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46655 * 299.99703 * 7 5 3 11 11 C 1.34776 * 120.00296 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99862 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99803 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.47020 * 179.97438 * 13 11 2 15 15 C 1.50696 * 109.47434 * 179.97438 * 14 13 11 16 16 C 1.38367 * 119.84698 * 270.27623 * 15 14 13 17 17 C 1.37946 * 120.14855 * 180.27431 * 16 15 14 18 18 C 1.39628 * 119.84518 * 359.44585 * 17 16 15 19 19 C 1.47727 * 120.14629 * 180.29667 * 18 17 16 20 20 O 1.21478 * 120.00457 * 0.02562 * 19 18 17 21 21 O 1.34714 * 120.00064 * 179.97438 * 19 18 17 22 22 C 1.39620 * 119.70558 * 0.27665 * 18 17 16 23 23 C 1.37942 * 119.84471 * 359.97438 * 22 18 17 24 24 H 1.09004 * 109.46808 * 272.15228 * 1 2 3 25 25 H 1.08997 * 109.47628 * 32.15976 * 1 2 3 26 26 H 1.09003 * 109.46909 * 152.16323 * 1 2 3 27 27 H 0.97001 * 119.99714 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47208 * 59.99771 * 13 11 2 29 29 H 1.09003 * 109.46975 * 299.99026 * 13 11 2 30 30 H 1.08999 * 109.47473 * 59.98996 * 14 13 11 31 31 H 1.09008 * 109.46974 * 299.99504 * 14 13 11 32 32 H 1.07999 * 119.92833 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.07915 * 179.71439 * 17 16 15 34 34 H 0.96699 * 116.99944 * 179.97438 * 21 19 18 35 35 H 1.07996 * 120.08123 * 180.02562 * 22 18 17 36 36 H 1.08009 * 119.92607 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2227 -0.3565 5 6 1.5343 2.3452 0.4587 6 7 0.3894 2.2706 1.0996 7 14 2.3334 4.0078 0.1644 8 1 2.4813 4.2344 -1.2957 9 1 1.4822 5.0762 0.7470 10 1 3.6716 4.0346 0.8076 11 6 2.1390 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3855 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 6 1.6264 -4.9403 0.0012 16 6 1.2775 -5.5335 1.2016 17 6 0.5928 -6.7310 1.2094 18 6 0.2417 -7.3387 0.0023 19 6 -0.4973 -8.6178 0.0030 20 8 -0.8013 -9.1432 1.0553 21 8 -0.8350 -9.2012 -1.1633 22 6 0.5919 -6.7317 -1.2053 23 6 1.2811 -5.5369 -1.1986 24 1 -0.3633 0.0386 1.0270 25 1 -0.3634 0.8699 -0.5470 26 1 -0.3633 -0.9088 -0.4799 27 1 -0.0404 3.0789 1.4202 28 1 0.7591 -2.5302 -0.8896 29 1 0.7586 -2.5299 0.8904 30 1 3.0065 -3.5774 0.8904 31 1 3.0064 -3.5775 -0.8896 32 1 1.5454 -5.0599 2.1345 33 1 0.3251 -7.1953 2.1471 34 1 -1.3177 -10.0376 -1.1122 35 1 0.3230 -7.1962 -2.1425 36 1 1.5530 -5.0664 -2.1321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737387864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = -103.737595 kcal Electronic energy + Delta-G solvation = -20273.712531 eV Core-core repulsion = 16915.762695 eV Total energy + Delta-G solvation = -3357.949836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59902 -39.17273 -38.31580 -36.32884 -34.84475 -33.71940 -31.63689 -31.15476 -29.91190 -26.53440 -25.58270 -24.14226 -22.94438 -22.41287 -20.76167 -18.70026 -18.35484 -17.63796 -16.88696 -16.23193 -15.83885 -15.52257 -15.14922 -14.77791 -14.38099 -14.36158 -14.12221 -13.64530 -13.22830 -13.12835 -12.83654 -12.38123 -11.85982 -11.71619 -11.63071 -11.48639 -11.24477 -11.19680 -11.15217 -10.84695 -10.78202 -10.58575 -10.40063 -10.21888 -9.14085 -9.03207 -8.95684 -8.36753 -7.68783 -6.31379 -3.88235 0.53327 1.24019 2.35960 2.78457 3.18290 3.23915 3.27786 3.62935 3.89563 4.13526 4.60722 4.67336 4.81220 4.91147 5.08874 5.13169 5.24905 5.29736 5.53118 5.57197 5.66558 5.87446 5.88435 6.03960 6.09636 6.19148 6.20245 6.26214 6.39881 6.48280 6.61755 6.74423 6.87975 7.22386 7.56022 7.64308 8.12646 8.48157 9.18626 9.43098 9.98367 10.72176 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043655 B = 0.002977 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.237314 B = 9403.160666 C = 9570.601205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.444 3.556 12 O -0.593 6.593 13 C -0.122 4.122 14 C -0.071 4.071 15 C -0.029 4.029 16 C -0.130 4.130 17 C -0.050 4.050 18 C -0.146 4.146 19 C 0.529 3.471 20 O -0.519 6.519 21 O -0.513 6.513 22 C -0.058 4.058 23 C -0.133 4.133 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.268 0.732 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.412 0.588 35 H 0.136 0.864 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -17.050 -3.991 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.166 5.166 3 C -0.435 4.435 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.754 3.246 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.232 3.768 12 O -0.479 6.479 13 C -0.162 4.162 14 C -0.108 4.108 15 C -0.029 4.029 16 C -0.148 4.148 17 C -0.069 4.069 18 C -0.147 4.147 19 C 0.375 3.625 20 O -0.409 6.409 21 O -0.325 6.325 22 C -0.076 4.076 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.271 0.729 35 H 0.154 0.846 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.632 -16.645 -3.644 17.422 hybrid contribution -0.323 0.337 0.021 0.467 sum -3.955 -16.308 -3.624 17.167 Atomic orbital electron populations 1.21508 0.81138 0.98782 1.01712 1.43605 1.05539 1.04848 1.62588 1.19619 0.99468 0.83930 1.40502 0.88443 1.25344 0.96513 1.00073 0.95393 1.69994 1.17374 1.29367 1.35644 0.85985 0.79019 0.80882 0.78731 1.19945 1.20959 1.19794 1.20031 0.88041 0.84862 0.83836 1.90510 1.14011 1.87218 1.56118 1.21494 0.98449 0.93277 1.03025 1.20468 0.96812 0.88661 1.04873 1.20504 0.93777 0.95718 0.92927 1.21125 0.99735 0.95354 0.98576 1.21244 0.94362 0.94194 0.97068 1.18966 1.06050 0.94422 0.95279 1.20995 0.76063 0.84646 0.80836 1.90881 1.52659 1.64441 1.32950 1.84568 1.71096 1.41497 1.35342 1.21420 0.94545 0.94409 0.97248 1.21150 0.99873 0.95671 0.98423 0.92413 0.91348 0.95484 0.92226 0.90411 0.90196 0.89853 0.89913 0.84687 0.84648 0.72914 0.84623 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.52 59.85 0.51 2.98 16 2 N -0.45 -11.34 3.02 -122.19 -0.37 -11.71 16 3 C -0.31 -8.54 9.29 -14.94 -0.14 -8.68 16 4 H 0.10 2.83 7.41 -52.48 -0.39 2.44 16 5 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 6 N -0.88 -23.48 10.62 55.50 0.59 -22.89 16 7 Si 0.93 20.69 29.57 -169.99 -5.03 15.67 16 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 C 0.44 10.47 7.63 -10.98 -0.08 10.38 16 12 O -0.59 -15.94 15.67 5.55 0.09 -15.85 16 13 C -0.12 -2.09 4.20 -27.88 -0.12 -2.21 16 14 C -0.07 -1.05 4.62 -27.88 -0.13 -1.18 16 15 C -0.03 -0.36 5.14 -104.53 -0.54 -0.90 16 16 C -0.13 -1.52 9.68 -39.64 -0.38 -1.90 16 17 C -0.05 -0.58 9.60 -39.17 -0.38 -0.95 16 18 C -0.15 -1.66 5.87 -104.99 -0.62 -2.28 16 19 C 0.53 5.88 8.27 34.61 0.29 6.17 16 20 O -0.52 -7.12 17.13 -19.25 -0.33 -7.45 16 21 O -0.51 -4.05 12.68 -40.53 -0.51 -4.56 16 22 C -0.06 -0.60 9.62 -39.17 -0.38 -0.98 16 23 C -0.13 -1.47 9.68 -39.64 -0.38 -1.86 16 24 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 25 H 0.07 1.59 7.06 -51.93 -0.37 1.22 16 26 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 29 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 31 H 0.08 1.27 8.04 -51.92 -0.42 0.85 16 32 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 1.45 7.65 -52.49 -0.40 1.05 16 34 H 0.41 1.37 9.11 45.56 0.42 1.78 16 35 H 0.14 1.14 7.61 -52.49 -0.40 0.74 16 36 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -33.12 316.01 -6.72 -39.84 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.48 Total: 2.88 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.44 Total: -0.70 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.22 Total: -34.59 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.76 Total: -27.86 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.12 -6.72 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737387864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.896 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds