Wall clock time and date at job start Mon Mar 30 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99705 * 2 1 4 4 O 1.21551 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.47856 * 119.99744 * 180.02562 * 3 2 1 6 6 C 1.39707 * 120.07442 * 359.97438 * 5 3 2 7 7 C 1.38073 * 120.15931 * 179.77112 * 6 5 3 8 8 C 1.38082 * 120.29827 * 0.51332 * 7 6 5 9 9 C 1.39715 * 120.14041 * 359.48362 * 8 7 6 10 10 C 1.47746 * 120.08070 * 180.23542 * 9 8 7 11 11 O 1.21473 * 120.00069 * 180.02562 * 10 9 8 12 12 O 1.34704 * 119.99900 * 0.02562 * 10 9 8 13 13 C 1.45198 * 117.00031 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46844 * 329.99749 * 13 12 10 15 15 C 1.52993 * 109.47367 * 90.00224 * 13 12 10 16 16 C 1.50707 * 109.46826 * 210.00005 * 13 12 10 17 17 H 1.07993 * 120.00348 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99615 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00391 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46644 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46882 * 120.00020 * 20 18 16 23 23 H 1.48494 * 109.47097 * 240.00552 * 20 18 16 24 24 C 1.39290 * 120.07159 * 179.97438 * 5 3 2 25 25 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47130 * 300.00026 * 1 2 3 27 27 H 1.09003 * 109.46941 * 60.00409 * 1 2 3 28 28 H 0.97002 * 120.00041 * 179.97438 * 2 1 3 29 29 H 1.07999 * 119.91942 * 0.02562 * 6 5 3 30 30 H 1.07994 * 119.85148 * 180.25549 * 7 6 5 31 31 H 1.08002 * 119.93203 * 179.76982 * 8 7 6 32 32 H 1.08999 * 109.46968 * 299.99641 * 15 13 12 33 33 H 1.08997 * 109.47527 * 59.99943 * 15 13 12 34 34 H 1.09003 * 109.47291 * 180.02562 * 15 13 12 35 35 H 0.96997 * 120.00001 * 179.97438 * 19 18 16 36 36 H 1.08003 * 120.14801 * 359.97438 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1672 -0.0006 6 6 4.3176 -0.0417 -0.0006 7 6 5.6983 -0.0438 -0.0059 8 6 6.3967 1.1474 -0.0005 9 6 5.7092 2.3637 -0.0006 10 6 6.4579 3.6374 -0.0001 11 8 5.8587 4.6941 0.0003 12 8 7.8049 3.6270 -0.0002 13 6 8.4741 4.9155 0.0009 14 1 7.8518 5.6485 -0.5123 15 6 8.7093 5.3669 1.4437 16 6 9.7976 4.7947 -0.7097 17 1 10.1052 3.8445 -1.1205 18 6 10.6158 5.8973 -0.8352 19 7 10.2415 7.0544 -0.3344 20 14 12.2567 5.7475 -1.7153 21 1 12.4418 4.3502 -2.1827 22 1 12.2783 6.6662 -2.8818 23 1 13.3539 6.1071 -0.7815 24 6 4.3154 2.3727 -0.0011 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9501 -0.8401 0.0004 29 1 3.7775 -0.9770 -0.0006 30 1 6.2344 -0.9812 -0.0100 31 1 7.4767 1.1388 -0.0010 32 1 7.7520 5.4543 1.9576 33 1 9.3316 4.6339 1.9569 34 1 9.2113 6.3345 1.4445 35 1 10.8173 7.8300 -0.4224 36 1 3.7790 3.3101 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744136072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:31 Heat of formation + Delta-G solvation = -99.700985 kcal Electronic energy + Delta-G solvation = -20504.138932 eV Core-core repulsion = 17146.364137 eV Total energy + Delta-G solvation = -3357.774795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46311 -39.50170 -38.06266 -35.70805 -34.94222 -33.30028 -31.77022 -31.19165 -29.51410 -27.24692 -25.34641 -24.44782 -23.41772 -21.56749 -20.90085 -19.79207 -18.45475 -16.75697 -16.68457 -16.34770 -16.01849 -15.48838 -15.47690 -15.01978 -14.73723 -14.37430 -14.08002 -13.85396 -13.37688 -13.02074 -12.64579 -12.60311 -12.18714 -12.03662 -11.90354 -11.42086 -11.23255 -11.08711 -10.85252 -10.37605 -10.29965 -10.22465 -9.77349 -9.57444 -9.49736 -9.16347 -9.11130 -8.91787 -8.50914 -6.19650 -4.26853 0.54451 0.96784 2.51353 2.86174 3.17818 3.22998 3.29279 3.33735 3.55843 3.89278 4.31238 4.41830 4.60966 4.71489 4.88797 5.12940 5.13667 5.19205 5.19261 5.34363 5.49345 5.68617 5.75875 6.02533 6.09164 6.16761 6.31609 6.60668 6.64675 6.88412 6.89961 7.11876 7.15636 7.57480 7.70719 7.90434 7.95305 8.11337 8.57744 8.84787 9.38549 10.87899 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.003411 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.157780 B = 8206.985805 C = 8624.588754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.735 5.735 3 C 0.561 3.439 4 O -0.530 6.530 5 C -0.155 4.155 6 C -0.064 4.064 7 C -0.140 4.140 8 C -0.035 4.035 9 C -0.116 4.116 10 C 0.494 3.506 11 O -0.511 6.511 12 O -0.350 6.350 13 C 0.215 3.785 14 H 0.048 0.952 15 C -0.155 4.155 16 C -0.521 4.521 17 H 0.070 0.930 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.912 3.088 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.001 4.001 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.401 0.599 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.017 0.983 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.266 0.734 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 -18.480 1.329 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.349 3.651 4 O -0.406 6.406 5 C -0.158 4.158 6 C -0.083 4.083 7 C -0.158 4.158 8 C -0.053 4.053 9 C -0.118 4.118 10 C 0.338 3.662 11 O -0.401 6.401 12 O -0.266 6.266 13 C 0.163 3.837 14 H 0.066 0.934 15 C -0.213 4.213 16 C -0.559 4.559 17 H 0.088 0.912 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.020 4.020 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.236 0.764 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.467 -17.177 1.347 21.868 hybrid contribution 1.046 -0.299 -0.381 1.153 sum -12.421 -17.476 0.966 21.462 Atomic orbital electron populations 1.21556 0.79150 1.02253 1.02626 1.45682 1.07893 1.08535 1.76621 1.18249 0.87130 0.83746 0.76004 1.90810 1.69824 1.31093 1.48915 1.19715 0.92671 0.94145 1.09237 1.21430 0.94793 0.96601 0.95463 1.21103 0.93688 0.98554 1.02432 1.21857 1.01765 0.90937 0.90767 1.19429 0.92977 0.92546 1.06814 1.20906 0.83234 0.88344 0.73742 1.90796 1.70426 1.32893 1.46016 1.86519 1.17366 1.41058 1.81696 1.20703 0.91394 0.76724 0.94875 0.93395 1.22169 0.98687 1.03978 0.96480 1.21045 1.01387 0.96942 1.36488 0.91203 1.24899 0.98789 0.94763 0.95583 1.69911 1.37671 1.00304 1.44709 0.86208 0.82329 0.78379 0.79148 1.19472 1.20746 1.20707 1.21407 0.92299 0.98659 0.89667 0.90559 0.92025 0.92023 0.76423 0.85423 0.84512 0.83369 0.96425 0.94359 0.88153 0.92401 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.85 0.64 1.23 16 2 N -0.73 -5.98 5.66 -68.04 -0.39 -6.37 16 3 C 0.56 7.11 7.77 -12.32 -0.10 7.01 16 4 O -0.53 -8.92 16.34 5.32 0.09 -8.84 16 5 C -0.15 -1.93 5.87 -105.02 -0.62 -2.54 16 6 C -0.06 -0.58 9.54 -39.09 -0.37 -0.95 16 7 C -0.14 -1.34 10.02 -39.70 -0.40 -1.74 16 8 C -0.03 -0.46 9.61 -39.09 -0.38 -0.84 16 9 C -0.12 -1.95 5.87 -105.03 -0.62 -2.57 16 10 C 0.49 10.78 7.87 34.62 0.27 11.05 16 11 O -0.51 -12.63 15.60 -19.25 -0.30 -12.93 16 12 O -0.35 -8.30 9.11 -40.50 -0.37 -8.67 16 13 C 0.22 5.81 2.56 -27.88 -0.07 5.74 16 14 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 15 C -0.16 -3.97 9.33 37.15 0.35 -3.62 16 16 C -0.52 -14.53 8.90 -34.44 -0.31 -14.84 16 17 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 20 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.00 -0.02 9.14 -38.76 -0.35 -0.37 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.40 1.92 6.85 -40.82 -0.28 1.64 16 29 H 0.13 0.61 6.39 -52.49 -0.34 0.28 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.15 1.93 7.60 -52.49 -0.40 1.53 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.15 2.63 7.23 -52.48 -0.38 2.25 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -34.17 317.55 -6.78 -40.95 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.16 Total: 0.64 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.04 Total: -0.84 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.24 Total: -31.03 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.58 Total: -30.44 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.17 -6.78 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.753 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds