Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99705 * 2 1 4 4 O 1.21551 * 120.00242 * 359.97438 * 3 2 1 5 5 C 1.47856 * 119.99744 * 180.02562 * 3 2 1 6 6 C 1.39707 * 120.07442 * 359.97438 * 5 3 2 7 7 C 1.38073 * 120.15931 * 179.77112 * 6 5 3 8 8 C 1.38082 * 120.29827 * 0.51332 * 7 6 5 9 9 C 1.39715 * 120.14041 * 359.48362 * 8 7 6 10 10 C 1.47746 * 120.08070 * 180.23542 * 9 8 7 11 11 O 1.21473 * 120.00069 * 180.02562 * 10 9 8 12 12 O 1.34704 * 119.99900 * 0.02562 * 10 9 8 13 13 C 1.45198 * 117.00031 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46844 * 329.99749 * 13 12 10 15 15 C 1.52993 * 109.47367 * 90.00224 * 13 12 10 16 16 C 1.50707 * 109.46826 * 210.00005 * 13 12 10 17 17 H 1.07993 * 120.00348 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99615 * 179.97438 * 16 13 12 19 19 N 1.31520 * 120.00391 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46644 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46882 * 120.00020 * 20 18 16 23 23 H 1.48494 * 109.47097 * 240.00552 * 20 18 16 24 24 C 1.39290 * 120.07159 * 179.97438 * 5 3 2 25 25 H 1.08998 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47130 * 300.00026 * 1 2 3 27 27 H 1.09003 * 109.46941 * 60.00409 * 1 2 3 28 28 H 0.97002 * 120.00041 * 179.97438 * 2 1 3 29 29 H 1.07999 * 119.91942 * 0.02562 * 6 5 3 30 30 H 1.07994 * 119.85148 * 180.25549 * 7 6 5 31 31 H 1.08002 * 119.93203 * 179.76982 * 8 7 6 32 32 H 1.08999 * 109.46968 * 299.99641 * 15 13 12 33 33 H 1.08997 * 109.47527 * 59.99943 * 15 13 12 34 34 H 1.09003 * 109.47291 * 180.02562 * 15 13 12 35 35 H 0.96997 * 120.00001 * 179.97438 * 19 18 16 36 36 H 1.08003 * 120.14801 * 359.97438 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6174 1.1672 -0.0006 6 6 4.3176 -0.0417 -0.0006 7 6 5.6983 -0.0438 -0.0059 8 6 6.3967 1.1474 -0.0005 9 6 5.7092 2.3637 -0.0006 10 6 6.4579 3.6374 -0.0001 11 8 5.8587 4.6941 0.0003 12 8 7.8049 3.6270 -0.0002 13 6 8.4741 4.9155 0.0009 14 1 7.8518 5.6485 -0.5123 15 6 8.7093 5.3669 1.4437 16 6 9.7976 4.7947 -0.7097 17 1 10.1052 3.8445 -1.1205 18 6 10.6158 5.8973 -0.8352 19 7 10.2415 7.0544 -0.3344 20 14 12.2567 5.7475 -1.7153 21 1 12.4418 4.3502 -2.1827 22 1 12.2783 6.6662 -2.8818 23 1 13.3539 6.1071 -0.7815 24 6 4.3154 2.3727 -0.0011 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9501 -0.8401 0.0004 29 1 3.7775 -0.9770 -0.0006 30 1 6.2344 -0.9812 -0.0100 31 1 7.4767 1.1388 -0.0010 32 1 7.7520 5.4543 1.9576 33 1 9.3316 4.6339 1.9569 34 1 9.2113 6.3345 1.4445 35 1 10.8173 7.8300 -0.4224 36 1 3.7790 3.3101 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744136072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -123.462067 kcal Electronic energy + Delta-G solvation = -20505.169290 eV Core-core repulsion = 17146.364137 eV Total energy + Delta-G solvation = -3358.805153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69443 -40.96913 -39.22245 -37.60655 -35.81762 -35.36941 -32.92782 -32.23497 -31.51998 -28.00659 -27.48972 -25.79290 -24.47617 -23.08763 -22.17643 -21.22337 -19.75873 -18.67523 -18.24636 -17.42020 -17.14441 -16.98312 -16.86637 -16.41175 -16.32698 -15.58455 -15.19123 -14.83007 -14.74411 -14.39763 -14.13286 -13.95984 -13.49975 -13.20390 -13.18248 -13.05405 -12.92403 -12.83306 -12.51734 -12.40872 -12.14462 -11.66379 -11.56132 -11.22424 -11.02072 -10.63296 -10.39524 -10.19702 -10.02455 -8.30218 -6.47846 -0.50357 -0.13477 1.35599 1.41990 1.43568 1.57003 1.80085 1.87123 2.17151 2.40523 2.75425 3.00767 3.56897 3.67408 3.78069 3.96853 4.06594 4.29063 4.41504 4.48773 4.62811 4.63134 4.74616 4.78451 4.81533 4.97098 5.01780 5.12334 5.22104 5.24076 5.32860 5.45563 5.57383 5.68100 5.85391 6.00459 6.45382 6.56775 6.84645 7.12523 7.23556 8.78225 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.003411 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.157780 B = 8206.985805 C = 8624.588754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.710 5.710 3 C 0.555 3.445 4 O -0.585 6.585 5 C -0.158 4.158 6 C -0.030 4.030 7 C -0.118 4.118 8 C -0.036 4.036 9 C -0.145 4.145 10 C 0.488 3.512 11 O -0.556 6.556 12 O -0.349 6.349 13 C 0.216 3.784 14 H 0.004 0.996 15 C -0.143 4.143 16 C -0.546 4.546 17 H 0.073 0.927 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.021 4.021 25 H 0.122 0.878 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.422 0.578 29 H 0.187 0.813 30 H 0.189 0.811 31 H 0.149 0.851 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.271 0.729 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -23.346 1.024 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.362 5.362 3 C 0.343 3.657 4 O -0.467 6.467 5 C -0.161 4.161 6 C -0.048 4.048 7 C -0.135 4.135 8 C -0.054 4.054 9 C -0.147 4.147 10 C 0.335 3.665 11 O -0.449 6.449 12 O -0.265 6.265 13 C 0.163 3.837 14 H 0.022 0.978 15 C -0.200 4.200 16 C -0.583 4.583 17 H 0.091 0.909 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.811 3.189 21 H -0.183 1.183 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.041 4.041 25 H 0.140 0.860 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.261 0.739 29 H 0.205 0.795 30 H 0.206 0.794 31 H 0.167 0.833 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.008 -22.123 1.052 25.685 hybrid contribution 0.741 1.090 -0.276 1.347 sum -12.266 -21.034 0.776 24.361 Atomic orbital electron populations 1.21764 0.77964 1.04855 1.01549 1.45540 1.08651 1.07886 1.74156 1.18395 0.87250 0.84272 0.75756 1.90793 1.70731 1.33373 1.51761 1.19799 0.92830 0.94221 1.09293 1.22042 0.94812 0.97045 0.90871 1.21631 0.93901 0.98655 0.99311 1.22009 1.02022 0.90870 0.90491 1.19129 0.92878 0.91244 1.11415 1.21935 0.82411 0.90107 0.72053 1.90758 1.70760 1.35118 1.48279 1.86498 1.18740 1.39065 1.82231 1.20432 0.90911 0.77271 0.95084 0.97841 1.21996 0.98763 1.03303 0.95976 1.21314 1.01882 0.97550 1.37551 0.90879 1.25916 1.02717 0.94053 0.95961 1.70041 1.39215 1.01127 1.45345 0.85058 0.77148 0.78863 0.77861 1.18272 1.20345 1.19594 1.21184 0.91977 0.99079 0.91812 0.86011 0.93167 0.93208 0.73935 0.79545 0.79392 0.83311 0.96208 0.92999 0.89914 0.91964 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.70 127.77 1.37 2.24 16 2 N -0.71 -9.10 5.66 -487.45 -2.76 -11.86 16 3 C 0.56 13.49 7.77 86.79 0.67 14.16 16 4 O -0.59 -20.61 16.34 -3.88 -0.06 -20.67 16 5 C -0.16 -3.70 5.87 -20.12 -0.12 -3.82 16 6 C -0.03 -0.37 9.54 22.59 0.22 -0.16 16 7 C -0.12 -1.62 10.02 22.19 0.22 -1.40 16 8 C -0.04 -0.88 9.61 22.59 0.22 -0.66 16 9 C -0.15 -5.08 5.87 -20.13 -0.12 -5.19 16 10 C 0.49 22.92 7.87 70.34 0.55 23.47 16 11 O -0.56 -30.28 15.60 19.92 0.31 -29.97 16 12 O -0.35 -17.44 9.11 -56.14 -0.51 -17.95 16 13 C 0.22 12.32 2.56 29.85 0.08 12.40 16 14 H 0.00 0.24 7.16 -2.39 -0.02 0.23 16 15 C -0.14 -7.63 9.33 71.98 0.67 -6.96 16 16 C -0.55 -31.26 8.90 25.60 0.23 -31.03 16 17 H 0.07 4.03 7.81 -2.91 -0.02 4.01 16 18 C 0.01 0.72 5.30 84.65 0.45 1.17 16 19 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 20 Si 0.99 42.92 29.54 68.60 2.03 44.95 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 C -0.02 -0.70 9.14 22.80 0.21 -0.49 16 25 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.42 1.58 6.85 -92.71 -0.64 0.94 16 29 H 0.19 0.20 6.39 -2.91 -0.02 0.19 16 30 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.15 3.64 7.60 -2.91 -0.02 3.62 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 4.71 6.07 -2.39 -0.01 4.70 16 35 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.11 4.52 7.23 -2.91 -0.02 4.49 16 Total: -1.00 -83.36 317.55 4.37 -78.99 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.48 Total: 6.34 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.65 Total: 3.73 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -2.52 Total: -65.41 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -0.26 Total: -68.60 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -83.36 4.37 -78.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744136072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.473 kcal (2) G-P(sol) polarization free energy of solvation -83.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds