Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35485 * 117.00050 * 2 1 4 4 C 1.39156 * 119.51581 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.40369 * 179.97438 * 4 3 2 6 6 C 1.40322 * 118.46536 * 359.97438 * 5 4 3 7 7 C 1.47483 * 120.49973 * 179.97438 * 6 5 4 8 8 O 1.21501 * 120.00041 * 354.79913 * 7 6 5 9 9 O 1.34745 * 119.99779 * 174.80305 * 7 6 5 10 10 C 1.45198 * 116.99609 * 183.71588 * 9 7 6 11 11 C 1.53001 * 109.47034 * 176.78813 * 10 9 7 12 12 C 1.50697 * 115.55158 * 306.73406 * 11 10 9 13 13 H 1.07996 * 120.00001 * 144.09930 * 12 11 10 14 14 C 1.37883 * 119.99700 * 324.10306 * 12 11 10 15 15 N 1.31512 * 119.99884 * 349.50838 * 14 12 11 16 16 Si 1.86801 * 119.99661 * 169.50541 * 14 12 11 17 17 H 1.48496 * 109.47235 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46968 * 120.00446 * 16 14 12 19 19 H 1.48501 * 109.46836 * 239.99968 * 16 14 12 20 20 C 1.53006 * 117.49806 * 161.06322 * 11 10 9 21 21 C 1.53004 * 117.49761 * 92.40654 * 11 10 9 22 22 C 1.39603 * 119.00021 * 0.25352 * 6 5 4 23 23 N 1.31690 * 120.48950 * 359.45103 * 22 6 5 24 24 H 1.09003 * 109.46787 * 60.00553 * 1 2 3 25 25 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47417 * 299.99971 * 1 2 3 27 27 H 1.08000 * 120.29791 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.76897 * 179.97438 * 5 4 3 29 29 H 1.09009 * 109.47215 * 296.78413 * 10 9 7 30 30 H 1.09000 * 109.47786 * 56.78763 * 10 9 7 31 31 H 0.97002 * 119.99780 * 185.03365 * 15 14 12 32 32 H 1.08993 * 117.49769 * 0.02562 * 20 11 10 33 33 H 1.09001 * 117.49668 * 145.02489 * 20 11 10 34 34 H 1.09004 * 117.49220 * 214.97789 * 21 11 10 35 35 H 1.08993 * 117.50060 * 359.97359 * 21 11 10 36 36 H 1.08003 * 119.75590 * 179.74748 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4343 1.2682 0.0005 5 6 4.0537 2.4896 0.0000 6 6 3.2559 3.6440 -0.0016 7 6 3.8758 4.9823 -0.0017 8 8 5.0819 5.0931 0.0951 9 8 3.1046 6.0820 -0.1090 10 6 3.7875 7.3610 -0.1857 11 6 2.7595 8.4769 -0.3831 12 6 1.8109 8.2898 -1.5389 13 1 0.7850 8.6163 -1.4538 14 6 2.2527 7.7016 -2.7051 15 7 3.5378 7.4922 -2.8900 16 14 1.0259 7.2020 -4.0222 17 1 -0.3481 7.5425 -3.5735 18 1 1.3297 7.9268 -5.2821 19 1 1.1208 5.7388 -4.2576 20 6 3.1951 9.9056 -0.0509 21 6 2.2188 9.1691 0.8698 22 6 1.8667 3.5067 0.0028 23 7 1.3134 2.3117 -0.0025 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0196 0.3606 0.0005 28 1 5.1312 2.5627 0.0008 29 1 4.3390 7.5345 0.7385 30 1 4.4809 7.3529 -1.0266 31 1 3.8556 7.1462 -3.7387 32 1 4.2141 10.0504 0.3079 33 1 2.7952 10.7100 -0.6681 34 1 1.1770 9.4893 0.8577 35 1 2.5950 8.8291 1.8346 36 1 1.2410 4.3870 0.0057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = -56.211495 kcal Electronic energy + Delta-G solvation = -21209.315611 eV Core-core repulsion = 17853.426662 eV Total energy + Delta-G solvation = -3355.888950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78355 -39.38683 -37.84463 -36.69010 -35.05880 -32.61450 -32.18117 -31.08783 -27.69293 -26.54154 -25.39926 -24.06725 -23.24754 -21.28558 -20.58242 -19.20858 -18.53078 -17.47407 -17.06137 -16.42450 -16.17054 -15.53516 -15.38031 -14.60915 -14.59041 -14.31613 -13.89491 -13.53528 -13.39226 -13.04618 -12.74537 -12.10185 -12.03905 -11.91099 -11.63485 -11.26554 -11.01472 -10.82504 -10.51918 -10.36518 -10.16212 -10.03913 -9.71042 -9.53249 -9.42146 -9.10135 -8.80061 -8.59347 -8.15157 -6.07725 -4.11901 0.74860 1.20703 2.91559 3.01359 3.24552 3.34372 3.37642 3.44657 3.93427 4.24587 4.34394 4.86822 4.92540 4.95316 4.99896 5.14390 5.18629 5.36992 5.48199 5.53837 5.60094 5.89567 6.00573 6.14763 6.21903 6.29579 6.44657 6.59730 6.63258 6.78316 6.94403 7.05116 7.23743 7.36881 7.47522 7.72240 7.87234 8.31005 8.56122 8.84087 9.48535 10.94151 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.005508 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.854972 B = 5082.572012 C = 5789.338718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.339 3.661 4 C -0.203 4.203 5 C 0.015 3.985 6 C -0.203 4.203 7 C 0.510 3.490 8 O -0.523 6.523 9 O -0.321 6.321 10 C 0.117 3.883 11 C 0.047 3.953 12 C -0.481 4.481 13 H 0.063 0.937 14 C 0.075 3.925 15 N -0.883 5.883 16 Si 0.893 3.107 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.192 4.192 21 C -0.209 4.209 22 C 0.203 3.797 23 N -0.547 5.547 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.028 0.972 30 H 0.114 0.886 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -11.860 5.525 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.213 6.213 3 C 0.160 3.840 4 C -0.223 4.223 5 C -0.010 4.010 6 C -0.207 4.207 7 C 0.354 3.646 8 O -0.415 6.415 9 O -0.235 6.235 10 C 0.044 3.956 11 C 0.047 3.953 12 C -0.519 4.519 13 H 0.082 0.918 14 C -0.128 4.128 15 N -0.520 5.520 16 Si 0.720 3.280 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.208 1.208 20 C -0.230 4.230 21 C -0.246 4.246 22 C 0.047 3.953 23 N -0.271 5.271 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.046 0.954 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.908 -12.277 5.433 13.737 hybrid contribution 0.194 0.077 -0.763 0.791 sum -2.715 -12.200 4.670 13.342 Atomic orbital electron populations 1.22913 0.76933 1.02929 1.02949 1.86187 1.23252 1.24687 1.87129 1.20173 0.89549 0.84893 0.89363 1.20698 0.91793 0.99467 1.10361 1.21260 1.01328 0.89707 0.88683 1.20198 0.95240 0.92439 1.12790 1.20571 0.85203 0.85476 0.73306 1.90759 1.15638 1.87902 1.47216 1.86499 1.40254 1.15541 1.81203 1.22836 0.95143 0.77363 1.00226 1.18893 0.95789 0.87569 0.93088 1.20456 0.95706 1.38876 0.96815 0.91846 1.24929 0.95107 0.94509 0.98260 1.69796 1.12827 1.45051 1.24355 0.86518 0.81676 0.78529 0.81254 1.19514 1.21057 1.20798 1.22964 0.97129 0.98845 1.04059 1.22970 0.98207 1.08602 0.94823 1.23065 0.91990 0.93985 0.86272 1.67499 1.40313 0.98634 1.20652 0.91951 0.88621 0.91990 0.83487 0.82843 0.95358 0.86876 0.92728 0.91460 0.89768 0.90281 0.91258 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.37 101.05 1.05 1.41 16 2 O -0.31 -3.80 10.46 -18.15 -0.19 -3.99 16 3 C 0.34 4.78 7.49 -16.95 -0.13 4.65 16 4 C -0.20 -2.59 9.97 -39.71 -0.40 -2.99 16 5 C 0.02 0.22 9.66 -39.27 -0.38 -0.16 16 6 C -0.20 -3.53 5.89 -104.84 -0.62 -4.15 16 7 C 0.51 10.78 7.88 34.50 0.27 11.05 16 8 O -0.52 -11.93 16.21 -19.27 -0.31 -12.24 16 9 O -0.32 -7.41 9.14 -40.61 -0.37 -7.78 16 10 C 0.12 2.83 4.55 37.16 0.17 3.00 16 11 C 0.05 1.15 2.12 -155.66 -0.33 0.82 16 12 C -0.48 -12.73 8.75 -34.44 -0.30 -13.03 16 13 H 0.06 1.67 7.84 -52.49 -0.41 1.26 16 14 C 0.07 1.99 5.19 -17.82 -0.09 1.90 16 15 N -0.88 -24.23 10.80 55.43 0.60 -23.63 16 16 Si 0.89 20.78 29.55 -169.99 -5.02 15.76 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C -0.19 -4.21 9.96 -26.69 -0.27 -4.47 16 21 C -0.21 -4.41 9.92 -26.69 -0.26 -4.68 16 22 C 0.20 3.35 10.79 -17.10 -0.18 3.17 16 23 N -0.55 -8.46 9.19 -12.94 -0.12 -8.58 16 24 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.15 2.02 7.74 -52.49 -0.41 1.62 16 29 H 0.03 0.64 8.08 -51.92 -0.42 0.22 16 30 H 0.11 3.04 6.05 -51.93 -0.31 2.72 16 31 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.18 2.94 7.63 -52.48 -0.40 2.54 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -29.71 319.83 -6.53 -36.24 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.46 Total: 2.88 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.47 Total: -3.48 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.48 Total: -32.21 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.87 Total: -24.00 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.71 -6.53 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.971 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds