Wall clock time and date at job start Mon Mar 30 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35485 * 117.00050 * 2 1 4 4 C 1.39156 * 119.51581 * 179.97438 * 3 2 1 5 5 C 1.36945 * 119.40369 * 179.97438 * 4 3 2 6 6 C 1.40322 * 118.46536 * 359.97438 * 5 4 3 7 7 C 1.47483 * 120.49973 * 179.97438 * 6 5 4 8 8 O 1.21501 * 120.00041 * 354.79913 * 7 6 5 9 9 O 1.34745 * 119.99779 * 174.80305 * 7 6 5 10 10 C 1.45198 * 116.99609 * 183.71588 * 9 7 6 11 11 C 1.53001 * 109.47034 * 176.78813 * 10 9 7 12 12 C 1.50697 * 115.55158 * 306.73406 * 11 10 9 13 13 H 1.07996 * 120.00001 * 144.09930 * 12 11 10 14 14 C 1.37883 * 119.99700 * 324.10306 * 12 11 10 15 15 N 1.31512 * 119.99884 * 349.50838 * 14 12 11 16 16 Si 1.86801 * 119.99661 * 169.50541 * 14 12 11 17 17 H 1.48496 * 109.47235 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46968 * 120.00446 * 16 14 12 19 19 H 1.48501 * 109.46836 * 239.99968 * 16 14 12 20 20 C 1.53006 * 117.49806 * 161.06322 * 11 10 9 21 21 C 1.53004 * 117.49761 * 92.40654 * 11 10 9 22 22 C 1.39603 * 119.00021 * 0.25352 * 6 5 4 23 23 N 1.31690 * 120.48950 * 359.45103 * 22 6 5 24 24 H 1.09003 * 109.46787 * 60.00553 * 1 2 3 25 25 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47417 * 299.99971 * 1 2 3 27 27 H 1.08000 * 120.29791 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.76897 * 179.97438 * 5 4 3 29 29 H 1.09009 * 109.47215 * 296.78413 * 10 9 7 30 30 H 1.09000 * 109.47786 * 56.78763 * 10 9 7 31 31 H 0.97002 * 119.99780 * 185.03365 * 15 14 12 32 32 H 1.08993 * 117.49769 * 0.02562 * 20 11 10 33 33 H 1.09001 * 117.49668 * 145.02489 * 20 11 10 34 34 H 1.09004 * 117.49220 * 214.97789 * 21 11 10 35 35 H 1.08993 * 117.50060 * 359.97359 * 21 11 10 36 36 H 1.08003 * 119.75590 * 179.74748 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4343 1.2682 0.0005 5 6 4.0537 2.4896 0.0000 6 6 3.2559 3.6440 -0.0016 7 6 3.8758 4.9823 -0.0017 8 8 5.0819 5.0931 0.0951 9 8 3.1046 6.0820 -0.1090 10 6 3.7875 7.3610 -0.1857 11 6 2.7595 8.4769 -0.3831 12 6 1.8109 8.2898 -1.5389 13 1 0.7850 8.6163 -1.4538 14 6 2.2527 7.7016 -2.7051 15 7 3.5378 7.4922 -2.8900 16 14 1.0259 7.2020 -4.0222 17 1 -0.3481 7.5425 -3.5735 18 1 1.3297 7.9268 -5.2821 19 1 1.1208 5.7388 -4.2576 20 6 3.1951 9.9056 -0.0509 21 6 2.2188 9.1691 0.8698 22 6 1.8667 3.5067 0.0028 23 7 1.3134 2.3117 -0.0025 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0196 0.3606 0.0005 28 1 5.1312 2.5627 0.0008 29 1 4.3390 7.5345 0.7385 30 1 4.4809 7.3529 -1.0266 31 1 3.8556 7.1462 -3.7387 32 1 4.2141 10.0504 0.3079 33 1 2.7952 10.7100 -0.6681 34 1 1.1770 9.4893 0.8577 35 1 2.5950 8.8291 1.8346 36 1 1.2410 4.3870 0.0057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:30 Heat of formation + Delta-G solvation = -73.938940 kcal Electronic energy + Delta-G solvation = -21210.084331 eV Core-core repulsion = 17853.426662 eV Total energy + Delta-G solvation = -3356.657669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99371 -40.94232 -39.01936 -38.41179 -36.80754 -34.17468 -33.79219 -32.30389 -28.82627 -28.10109 -27.34799 -25.38459 -24.39696 -22.99548 -22.08204 -21.10198 -19.59882 -18.92650 -18.67034 -17.93453 -17.33166 -17.14459 -17.05503 -16.49047 -15.77495 -15.58376 -15.27455 -15.03552 -14.56884 -14.46309 -14.05944 -13.80062 -13.66897 -13.49486 -12.89427 -12.80008 -12.75069 -12.32852 -12.24426 -12.11278 -11.83355 -11.42396 -11.29387 -11.19320 -11.04355 -10.83258 -10.65332 -10.06031 -9.75673 -8.07382 -6.16933 -0.51761 0.06888 1.38518 1.43593 1.50684 1.53093 1.84439 1.98038 2.41282 2.64526 3.02756 3.11233 3.55050 3.68244 3.75323 3.92916 4.02124 4.23955 4.39273 4.42388 4.42869 4.54248 4.59733 4.70087 4.76435 4.78276 4.93129 4.95267 5.07413 5.17343 5.20886 5.42426 5.54179 5.73533 5.83608 6.00830 6.34640 6.53769 6.77923 6.90823 7.45200 8.92705 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.005508 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.854972 B = 5082.572012 C = 5789.338718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.339 3.661 4 C -0.187 4.187 5 C 0.018 3.982 6 C -0.227 4.227 7 C 0.507 3.493 8 O -0.548 6.548 9 O -0.332 6.332 10 C 0.126 3.874 11 C 0.008 3.992 12 C -0.493 4.493 13 H 0.058 0.942 14 C 0.034 3.966 15 N -0.907 5.907 16 Si 0.945 3.055 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.285 1.285 20 C -0.186 4.186 21 C -0.185 4.185 22 C 0.202 3.798 23 N -0.556 5.556 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.061 0.939 27 H 0.185 0.815 28 H 0.166 0.834 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.259 0.741 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -13.553 6.032 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.210 6.210 3 C 0.159 3.841 4 C -0.207 4.207 5 C -0.006 4.006 6 C -0.230 4.230 7 C 0.354 3.646 8 O -0.442 6.442 9 O -0.247 6.247 10 C 0.053 3.947 11 C 0.008 3.992 12 C -0.530 4.530 13 H 0.076 0.924 14 C -0.166 4.166 15 N -0.546 5.546 16 Si 0.771 3.229 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.211 1.211 20 C -0.224 4.224 21 C -0.222 4.222 22 C 0.046 3.954 23 N -0.280 5.280 24 H 0.074 0.926 25 H 0.149 0.851 26 H 0.079 0.921 27 H 0.202 0.798 28 H 0.183 0.817 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.713 -13.976 5.949 15.637 hybrid contribution 0.383 0.493 -0.873 1.073 sum -3.330 -13.484 5.076 14.787 Atomic orbital electron populations 1.23189 0.75336 1.05188 1.02594 1.86213 1.24796 1.23470 1.86481 1.20519 0.90297 0.85048 0.88193 1.21026 0.91522 0.99995 1.08152 1.21435 1.01806 0.89333 0.88035 1.20094 0.95904 0.91198 1.15853 1.21204 0.85046 0.86170 0.72222 1.90726 1.16570 1.88264 1.48615 1.86500 1.40727 1.15808 1.81618 1.22558 0.94776 0.78194 0.99210 1.19022 0.96868 0.88826 0.94518 1.20680 0.95803 1.38830 0.97727 0.92422 1.25533 0.96342 0.94687 1.00060 1.69942 1.14110 1.46000 1.24521 0.85693 0.80200 0.77782 0.79185 1.18755 1.20757 1.21144 1.22967 0.98232 0.97202 1.03983 1.22988 0.98498 1.06276 0.94426 1.22925 0.91586 0.94405 0.86530 1.67500 1.40641 0.98625 1.21247 0.92595 0.85129 0.92055 0.79818 0.81676 0.94505 0.90001 0.93120 0.90085 0.89993 0.89588 0.89324 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.37 113.37 1.18 1.69 16 2 O -0.30 -6.64 10.46 -87.85 -0.92 -7.56 16 3 C 0.34 8.76 7.49 84.82 0.64 9.40 16 4 C -0.19 -4.26 9.97 22.19 0.22 -4.04 16 5 C 0.02 0.51 9.66 22.47 0.22 0.73 16 6 C -0.23 -7.88 5.89 -20.00 -0.12 -8.00 16 7 C 0.51 21.90 7.88 70.26 0.55 22.46 16 8 O -0.55 -25.55 16.21 19.83 0.32 -25.23 16 9 O -0.33 -15.70 9.14 -56.55 -0.52 -16.21 16 10 C 0.13 6.21 4.55 71.98 0.33 6.53 16 11 C 0.01 0.39 2.12 -52.93 -0.11 0.28 16 12 C -0.49 -26.27 8.75 25.60 0.22 -26.04 16 13 H 0.06 3.05 7.84 -2.91 -0.02 3.03 16 14 C 0.03 1.82 5.19 84.66 0.44 2.26 16 15 N -0.91 -50.94 10.80 21.45 0.23 -50.71 16 16 Si 0.95 42.98 29.55 68.60 2.03 45.01 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.19 -8.00 9.96 30.62 0.30 -7.70 16 21 C -0.18 -7.55 9.92 30.62 0.30 -7.24 16 22 C 0.20 6.65 10.79 85.04 0.92 7.57 16 23 N -0.56 -16.55 9.19 -307.72 -2.83 -19.37 16 24 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 25 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 28 H 0.17 4.12 7.74 -2.91 -0.02 4.10 16 29 H 0.04 1.69 8.08 -2.38 -0.02 1.67 16 30 H 0.08 4.55 6.05 -2.39 -0.01 4.54 16 31 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 32 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 35 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.18 5.83 7.63 -2.91 -0.02 5.80 16 Total: -1.00 -63.91 319.83 4.50 -59.41 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.09 Total: 16.77 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.09 Total: -2.10 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -2.60 Total: -70.08 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.11 Total: -49.01 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.91 4.50 -59.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.529 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds