Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00051 * 2 1 4 4 O 1.21288 * 120.00003 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00187 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47186 * 179.97438 * 5 3 2 7 7 O 1.45200 * 109.47190 * 179.97438 * 6 5 3 8 8 C 1.34701 * 117.00169 * 179.97438 * 7 6 5 9 9 O 1.21471 * 120.00074 * 0.02562 * 8 7 6 10 10 C 1.47769 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.39960 * 120.03302 * 359.97438 * 10 8 7 12 12 C 1.38317 * 120.35753 * 180.02562 * 11 10 8 13 13 C 1.37755 * 120.41703 * 359.97438 * 12 11 10 14 14 C 1.40757 * 120.05004 * 0.02562 * 13 12 11 15 15 C 1.41439 * 120.17704 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99698 * 24.41558 * 15 14 13 17 17 C 1.39932 * 120.00172 * 204.41934 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.84828 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.84744 * 17 15 14 20 20 H 1.48496 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46953 * 120.00169 * 19 17 15 22 22 H 1.48506 * 109.46942 * 240.00042 * 19 17 15 23 23 C 1.39059 * 120.03051 * 180.02562 * 10 8 7 24 24 H 1.08989 * 109.47438 * 300.00383 * 1 2 3 25 25 H 1.08996 * 109.46754 * 60.00991 * 1 2 3 26 26 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99963 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46833 * 59.99352 * 5 3 2 29 29 H 1.09000 * 109.46451 * 299.99492 * 5 3 2 30 30 H 1.09004 * 109.47581 * 59.99542 * 6 5 3 31 31 H 1.09004 * 109.47091 * 299.99727 * 6 5 3 32 32 H 1.08008 * 119.82112 * 359.97438 * 11 10 8 33 33 H 1.08005 * 119.79035 * 180.02562 * 12 11 10 34 34 H 1.08001 * 119.97827 * 179.97438 * 13 12 11 35 35 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.20114 * 359.70048 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6096 -0.0002 7 8 5.6079 2.6097 0.0010 8 6 6.2194 3.8099 0.0000 9 8 5.5579 4.8286 -0.0014 10 6 7.6951 3.8872 0.0016 11 6 8.4581 2.7138 0.0048 12 6 9.8397 2.7784 0.0069 13 6 10.4809 3.9976 0.0054 14 6 9.7307 5.1886 0.0022 15 6 10.3863 6.4419 0.0011 16 1 11.3919 6.5249 -0.3840 17 6 9.7321 7.5741 0.4992 18 7 8.6846 7.4379 1.2710 19 14 10.3544 9.2804 0.0619 20 1 11.5440 9.1626 -0.8190 21 1 9.2864 10.0302 -0.6469 22 1 10.7271 10.0046 1.3037 23 6 8.3271 5.1259 0.0011 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8400 0.0004 28 1 4.0096 0.6531 -0.8891 29 1 4.0088 0.6536 0.8909 30 1 3.7922 3.1242 0.8893 31 1 3.7929 3.1229 -0.8907 32 1 7.9653 1.7527 0.0065 33 1 10.4195 1.8672 0.0090 34 1 11.5601 4.0398 0.0075 35 1 8.2314 8.2228 1.6165 36 1 7.7425 6.0340 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749058613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = -113.999297 kcal Electronic energy + Delta-G solvation = -20227.801543 eV Core-core repulsion = 16869.406726 eV Total energy + Delta-G solvation = -3358.394817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07743 -39.51917 -37.38853 -35.82993 -34.88664 -33.76417 -32.11483 -30.25715 -29.50650 -27.35645 -25.41341 -24.17448 -22.42716 -20.99016 -20.63920 -19.83597 -17.99452 -17.28534 -16.45249 -16.40868 -16.13453 -15.76367 -15.37367 -14.93039 -14.63302 -13.89810 -13.87780 -13.45181 -13.27156 -12.87522 -12.72835 -12.61710 -12.46679 -11.84723 -11.64929 -11.50735 -11.19515 -11.10690 -10.76533 -10.51445 -10.24724 -10.17578 -10.13407 -9.73096 -9.46901 -9.45962 -9.24837 -7.74922 -7.56643 -6.83315 -4.44230 1.98913 2.38314 2.67670 2.77029 3.07205 3.11656 3.13416 3.45510 3.61246 3.90327 4.49671 4.57514 4.78758 4.90057 4.99249 5.17964 5.34615 5.46793 5.53556 5.59673 5.74297 5.91505 6.05770 6.12935 6.38842 6.63555 6.92374 6.94763 6.99832 7.12390 7.16579 7.30417 7.67567 7.74740 7.90550 7.92727 8.09839 8.43847 8.57088 8.76528 8.78415 10.11960 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.003361 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.009727 B = 8328.493375 C = 9185.286133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.517 3.483 4 O -0.534 6.534 5 C -0.140 4.140 6 C 0.080 3.920 7 O -0.359 6.359 8 C 0.512 3.488 9 O -0.513 6.513 10 C -0.114 4.114 11 C -0.195 4.195 12 C -0.104 4.104 13 C -0.203 4.203 14 C 0.095 3.905 15 C -0.459 4.459 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.785 5.785 19 Si 0.910 3.090 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.274 1.274 23 C -0.089 4.089 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.404 0.596 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.285 0.715 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 -13.610 -1.680 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.390 5.390 3 C 0.303 3.697 4 O -0.410 6.410 5 C -0.180 4.180 6 C 0.006 3.994 7 O -0.277 6.277 8 C 0.359 3.641 9 O -0.402 6.402 10 C -0.115 4.115 11 C -0.215 4.215 12 C -0.122 4.122 13 C -0.222 4.222 14 C 0.093 3.907 15 C -0.488 4.488 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.109 4.109 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.237 0.763 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.420 -12.396 -1.532 16.266 hybrid contribution 0.200 0.322 -0.027 0.380 sum -10.221 -12.074 -1.559 15.895 Atomic orbital electron populations 1.21542 0.79477 1.02203 1.02492 1.45770 1.07861 1.08721 1.76653 1.20485 0.89846 0.83697 0.75625 1.90765 1.70538 1.31184 1.48517 1.21483 0.91435 0.98925 1.06120 1.22471 0.77822 0.95246 1.03900 1.86500 1.21484 1.34521 1.85236 1.21854 0.89969 0.80270 0.72009 1.90786 1.66978 1.35972 1.46505 1.18829 0.86275 0.95861 1.10533 1.20544 0.93581 0.95695 1.11660 1.20505 0.93815 0.96588 1.01278 1.21176 0.98180 0.92326 1.10562 1.17551 0.91013 0.92844 0.89330 1.19602 1.01515 0.91653 1.36019 0.89885 1.25976 0.94163 1.01911 0.92601 1.69782 1.16576 1.32937 1.21678 0.86221 0.79959 0.81029 0.79335 1.18302 1.19544 1.19889 1.21667 0.95003 0.95170 0.99042 0.92149 0.92164 0.90608 0.76251 0.87545 0.87520 0.90696 0.90734 0.87884 0.88545 0.88352 0.90412 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.74 -5.58 5.71 -67.08 -0.38 -5.97 16 3 C 0.52 5.96 7.83 -10.99 -0.09 5.87 16 4 O -0.53 -8.64 15.98 5.55 0.09 -8.55 16 5 C -0.14 -1.48 6.08 -27.88 -0.17 -1.65 16 6 C 0.08 1.28 4.76 37.15 0.18 1.46 16 7 O -0.36 -6.75 9.46 -40.49 -0.38 -7.13 16 8 C 0.51 11.76 7.90 34.63 0.27 12.03 16 9 O -0.51 -13.06 16.12 -19.24 -0.31 -13.37 16 10 C -0.11 -2.75 5.87 -105.05 -0.62 -3.37 16 11 C -0.20 -4.25 9.62 -38.91 -0.37 -4.62 16 12 C -0.10 -2.21 10.01 -39.73 -0.40 -2.61 16 13 C -0.20 -4.76 9.78 -38.81 -0.38 -5.14 16 14 C 0.10 2.50 5.57 -106.87 -0.60 1.90 16 15 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 16 H 0.08 2.04 7.91 -52.48 -0.41 1.63 16 17 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 18 N -0.79 -20.73 10.95 55.55 0.61 -20.12 16 19 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.09 -2.38 8.23 -38.42 -0.32 -2.70 16 24 H 0.06 0.46 8.14 -51.94 -0.42 0.04 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.40 1.70 8.83 -40.82 -0.36 1.34 16 28 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 31 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.10 1.97 7.59 -52.48 -0.40 1.58 16 33 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 36 H 0.14 3.87 5.74 -52.49 -0.30 3.57 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -32.33 321.07 -7.26 -39.58 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.41 Total: 5.22 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.27 Total: -8.15 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.23 Total: -26.09 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.60 Total: -29.05 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.33 -7.26 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749058613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.415 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds