Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00051 * 2 1 4 4 O 1.21288 * 120.00003 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00187 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47186 * 179.97438 * 5 3 2 7 7 O 1.45200 * 109.47190 * 179.97438 * 6 5 3 8 8 C 1.34701 * 117.00169 * 179.97438 * 7 6 5 9 9 O 1.21471 * 120.00074 * 0.02562 * 8 7 6 10 10 C 1.47769 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.39960 * 120.03302 * 359.97438 * 10 8 7 12 12 C 1.38317 * 120.35753 * 180.02562 * 11 10 8 13 13 C 1.37755 * 120.41703 * 359.97438 * 12 11 10 14 14 C 1.40757 * 120.05004 * 0.02562 * 13 12 11 15 15 C 1.41439 * 120.17704 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99698 * 24.41558 * 15 14 13 17 17 C 1.39932 * 120.00172 * 204.41934 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.84828 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.84744 * 17 15 14 20 20 H 1.48496 * 109.47243 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46953 * 120.00169 * 19 17 15 22 22 H 1.48506 * 109.46942 * 240.00042 * 19 17 15 23 23 C 1.39059 * 120.03051 * 180.02562 * 10 8 7 24 24 H 1.08989 * 109.47438 * 300.00383 * 1 2 3 25 25 H 1.08996 * 109.46754 * 60.00991 * 1 2 3 26 26 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99963 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46833 * 59.99352 * 5 3 2 29 29 H 1.09000 * 109.46451 * 299.99492 * 5 3 2 30 30 H 1.09004 * 109.47581 * 59.99542 * 6 5 3 31 31 H 1.09004 * 109.47091 * 299.99727 * 6 5 3 32 32 H 1.08008 * 119.82112 * 359.97438 * 11 10 8 33 33 H 1.08005 * 119.79035 * 180.02562 * 12 11 10 34 34 H 1.08001 * 119.97827 * 179.97438 * 13 12 11 35 35 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 36 36 H 1.07997 * 120.20114 * 359.70048 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1559 2.6096 -0.0002 7 8 5.6079 2.6097 0.0010 8 6 6.2194 3.8099 0.0000 9 8 5.5579 4.8286 -0.0014 10 6 7.6951 3.8872 0.0016 11 6 8.4581 2.7138 0.0048 12 6 9.8397 2.7784 0.0069 13 6 10.4809 3.9976 0.0054 14 6 9.7307 5.1886 0.0022 15 6 10.3863 6.4419 0.0011 16 1 11.3919 6.5249 -0.3840 17 6 9.7321 7.5741 0.4992 18 7 8.6846 7.4379 1.2710 19 14 10.3544 9.2804 0.0619 20 1 11.5440 9.1626 -0.8190 21 1 9.2864 10.0302 -0.6469 22 1 10.7271 10.0046 1.3037 23 6 8.3271 5.1259 0.0011 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8400 0.0004 28 1 4.0096 0.6531 -0.8891 29 1 4.0088 0.6536 0.8909 30 1 3.7922 3.1242 0.8893 31 1 3.7929 3.1229 -0.8907 32 1 7.9653 1.7527 0.0065 33 1 10.4195 1.8672 0.0090 34 1 11.5601 4.0398 0.0075 35 1 8.2314 8.2228 1.6165 36 1 7.7425 6.0340 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749058613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = -135.295494 kcal Electronic energy + Delta-G solvation = -20228.725015 eV Core-core repulsion = 16869.406726 eV Total energy + Delta-G solvation = -3359.318289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53765 -40.72692 -39.18493 -37.54102 -35.69935 -35.61958 -33.28859 -32.04138 -31.34734 -28.20469 -27.26808 -25.56061 -23.88131 -22.83457 -21.64048 -21.44042 -19.70952 -18.53154 -17.81775 -17.76962 -17.69260 -16.97973 -16.60324 -16.52256 -16.39238 -15.26193 -15.08252 -15.01217 -14.67749 -14.37800 -14.16703 -13.93199 -13.52681 -13.12453 -13.03293 -12.87643 -12.82596 -12.78516 -12.56693 -12.20524 -12.05254 -11.66185 -11.53563 -11.36791 -11.10674 -11.09670 -10.19540 -9.61469 -9.43724 -8.68991 -6.39654 0.12611 0.97009 1.37246 1.44319 1.45320 1.50238 1.53631 1.78992 2.18584 2.39398 2.72303 3.55812 3.63449 3.78405 3.85641 4.10979 4.34714 4.44329 4.50187 4.58487 4.64537 4.65885 4.68513 4.89007 4.94526 5.05592 5.14411 5.26781 5.28695 5.37862 5.45197 5.82877 5.89941 6.01991 6.23886 6.46498 6.53596 6.78581 6.86332 6.89667 7.17446 8.28539 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.003361 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.009727 B = 8328.493375 C = 9185.286133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.514 3.486 4 O -0.592 6.592 5 C -0.125 4.125 6 C 0.075 3.925 7 O -0.341 6.341 8 C 0.514 3.486 9 O -0.550 6.550 10 C -0.128 4.128 11 C -0.176 4.176 12 C -0.098 4.098 13 C -0.202 4.202 14 C 0.064 3.936 15 C -0.493 4.493 16 H 0.088 0.912 17 C 0.028 3.972 18 N -0.828 5.828 19 Si 0.983 3.017 20 H -0.249 1.249 21 H -0.272 1.272 22 H -0.264 1.264 23 C -0.126 4.126 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.116 0.884 27 H 0.424 0.576 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.116 0.884 35 H 0.287 0.713 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -16.847 -2.012 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.369 5.369 3 C 0.301 3.699 4 O -0.473 6.473 5 C -0.165 4.165 6 C 0.001 3.999 7 O -0.258 6.258 8 C 0.362 3.638 9 O -0.442 6.442 10 C -0.130 4.130 11 C -0.196 4.196 12 C -0.116 4.116 13 C -0.222 4.222 14 C 0.062 3.938 15 C -0.522 4.522 16 H 0.107 0.893 17 C -0.187 4.187 18 N -0.453 5.453 19 Si 0.804 3.196 20 H -0.172 1.172 21 H -0.197 1.197 22 H -0.189 1.189 23 C -0.146 4.146 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.134 0.866 27 H 0.262 0.738 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.687 -15.737 -1.865 18.573 hybrid contribution -0.105 1.065 0.071 1.072 sum -9.793 -14.672 -1.794 17.731 Atomic orbital electron populations 1.21701 0.78675 1.04483 1.01335 1.45642 1.08425 1.08426 1.74405 1.20669 0.90210 0.83918 0.75104 1.90756 1.71554 1.33391 1.51562 1.21445 0.90717 0.95266 1.09035 1.22702 0.75789 0.99072 1.02359 1.86457 1.23195 1.31864 1.84280 1.21784 0.89829 0.80893 0.71286 1.90769 1.67689 1.37543 1.48167 1.19065 0.87271 0.96110 1.10509 1.21003 0.93967 0.96036 1.08552 1.20995 0.93939 0.97517 0.99152 1.21522 0.99160 0.92348 1.09130 1.17910 0.91226 0.94345 0.90332 1.19887 1.02159 0.92651 1.37504 0.89349 1.26877 0.94089 1.05808 0.91877 1.69880 1.18225 1.34007 1.23214 0.85138 0.79394 0.75789 0.79302 1.17210 1.19741 1.18914 1.21467 0.95415 0.95192 1.02516 0.93399 0.93353 0.86553 0.73835 0.84455 0.84609 0.92579 0.92309 0.84240 0.83746 0.86587 0.90258 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.70 127.77 1.37 2.29 16 2 N -0.72 -8.87 5.71 -484.53 -2.77 -11.64 16 3 C 0.51 11.08 7.83 87.66 0.69 11.76 16 4 O -0.59 -19.47 15.98 -3.05 -0.05 -19.52 16 5 C -0.13 -2.32 6.08 29.85 0.18 -2.14 16 6 C 0.08 2.37 4.76 71.98 0.34 2.71 16 7 O -0.34 -12.40 9.46 -56.11 -0.53 -12.93 16 8 C 0.51 23.99 7.90 70.34 0.56 24.54 16 9 O -0.55 -29.41 16.12 19.93 0.32 -29.09 16 10 C -0.13 -6.24 5.87 -20.14 -0.12 -6.36 16 11 C -0.18 -7.16 9.62 22.71 0.22 -6.94 16 12 C -0.10 -3.83 10.01 22.17 0.22 -3.61 16 13 C -0.20 -9.19 9.78 22.77 0.22 -8.97 16 14 C 0.06 3.44 5.57 -21.32 -0.12 3.32 16 15 C -0.49 -26.41 9.05 23.47 0.21 -26.19 16 16 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 17 C 0.03 1.47 5.14 85.25 0.44 1.90 16 18 N -0.83 -46.08 10.95 21.82 0.24 -45.84 16 19 Si 0.98 39.41 29.60 68.60 2.03 41.44 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.13 -7.01 8.23 23.02 0.19 -6.82 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.42 1.82 8.83 -92.71 -0.82 1.00 16 28 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.98 8.09 -2.38 -0.02 1.96 16 31 H 0.06 2.04 8.09 -2.38 -0.02 2.02 16 32 H 0.14 4.64 7.59 -2.91 -0.02 4.61 16 33 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 35 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 36 H 0.10 6.29 5.74 -2.91 -0.02 6.27 16 Total: -1.00 -75.86 321.07 3.93 -71.93 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.29 Total: 20.14 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.40 Total: -14.50 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -2.53 Total: -57.48 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -0.26 Total: -61.54 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -75.86 3.93 -71.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749058613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.368 kcal (2) G-P(sol) polarization free energy of solvation -75.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds