Wall clock time and date at job start Mon Mar 30 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36865 * 119.99894 * 2 1 4 4 H 1.08003 * 120.00284 * 198.83860 * 3 2 1 5 5 C 1.39050 * 120.00088 * 18.84430 * 3 2 1 6 6 N 1.31360 * 119.99931 * 18.68881 * 5 3 2 7 7 Si 1.86798 * 119.99973 * 198.69116 * 5 3 2 8 8 H 1.48497 * 109.47425 * 59.99495 * 7 5 3 9 9 H 1.48503 * 109.47149 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47137 * 299.99528 * 7 5 3 11 11 C 1.34775 * 119.99903 * 180.02562 * 2 1 3 12 12 O 1.21594 * 120.00159 * 183.37149 * 11 2 1 13 13 C 1.47726 * 120.00225 * 3.36555 * 11 2 1 14 14 C 1.39664 * 120.15434 * 137.32423 * 13 11 2 15 15 C 1.37913 * 119.85407 * 179.97438 * 14 13 11 16 16 C 1.38395 * 120.14622 * 0.02562 * 15 14 13 17 17 C 1.38358 * 120.30780 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.92400 * 179.97438 * 17 16 15 19 19 O 1.43756 * 109.62716 * 118.90833 * 18 17 16 20 20 C 1.44585 * 104.91588 * 215.71005 * 19 18 17 21 21 C 1.54916 * 101.63668 * 36.26630 * 20 19 18 22 22 O 1.43362 * 109.63052 * 359.69171 * 18 17 16 23 23 C 1.37959 * 120.14948 * 0.02562 * 17 16 15 24 24 H 1.09001 * 109.46850 * 272.36549 * 1 2 3 25 25 H 1.08996 * 109.47341 * 32.36234 * 1 2 3 26 26 H 1.09005 * 109.47224 * 152.36707 * 1 2 3 27 27 H 0.96999 * 120.00215 * 180.02562 * 6 5 3 28 28 H 1.08003 * 120.07351 * 0.02562 * 14 13 11 29 29 H 1.07996 * 119.92839 * 179.72208 * 15 14 13 30 30 H 1.07998 * 119.84916 * 179.97438 * 16 15 14 31 31 H 1.08998 * 109.62681 * 239.29672 * 18 17 16 32 32 H 1.09001 * 111.08654 * 278.15836 * 20 19 18 33 33 H 1.09000 * 110.98164 * 154.33314 * 20 19 18 34 34 H 1.09000 * 110.69534 * 205.95832 * 21 20 19 35 35 H 1.08997 * 110.83776 * 82.82883 * 21 20 19 36 36 H 1.08004 * 120.07161 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1860 1.2104 -0.3020 5 6 1.5100 2.3572 0.3890 6 7 0.4017 2.2987 1.0917 7 14 2.2270 4.0149 -0.0879 8 1 2.2953 4.1175 -1.5678 9 1 1.3637 5.0994 0.4448 10 1 3.5927 4.1456 0.4808 11 6 2.1389 -1.1672 -0.0005 12 8 3.3532 -1.1682 0.0614 13 6 1.4022 -2.4454 -0.0762 14 6 1.8622 -3.4724 -0.9034 15 6 1.1699 -4.6634 -0.9690 16 6 0.0214 -4.8419 -0.2177 17 6 -0.4400 -3.8288 0.6039 18 6 -1.6919 -4.0324 1.4179 19 8 -1.3814 -3.9221 2.8172 20 6 -2.2393 -4.8883 3.4660 21 6 -2.2553 -6.0385 2.4284 22 8 -2.2221 -5.3406 1.1671 23 6 0.2428 -2.6324 0.6790 24 1 -0.3633 0.0424 1.0268 25 1 -0.3634 0.8680 -0.5501 26 1 -0.3634 -0.9105 -0.4767 27 1 -0.0445 3.1161 1.3627 28 1 2.7586 -3.3345 -1.4899 29 1 1.5220 -5.4566 -1.6116 30 1 -0.5172 -5.7764 -0.2730 31 1 -2.4316 -3.2792 1.1464 32 1 -3.2406 -4.4849 3.6168 33 1 -1.8084 -5.2207 4.4105 34 1 -3.1685 -6.6267 2.5193 35 1 -1.3768 -6.6739 2.5403 36 1 -0.1183 -1.8426 1.3211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758012666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:09 Heat of formation + Delta-G solvation = -75.121495 kcal Electronic energy + Delta-G solvation = -21488.421357 eV Core-core repulsion = 18131.712408 eV Total energy + Delta-G solvation = -3356.708949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63276 -39.22223 -37.37845 -35.14085 -34.71520 -31.96856 -31.92677 -30.41326 -29.25506 -26.33975 -24.99687 -24.80653 -23.47592 -22.45064 -21.40991 -19.10512 -17.45174 -17.20137 -16.84759 -16.34344 -15.81559 -15.65018 -14.99146 -14.74349 -14.58994 -14.09002 -13.83257 -13.65728 -13.26938 -13.07023 -12.80751 -12.61226 -12.26375 -11.76615 -11.67036 -11.55550 -11.30463 -11.11767 -10.92964 -10.67435 -10.40627 -10.37760 -10.29338 -9.79996 -9.04866 -8.57506 -8.52242 -8.24582 -7.74788 -6.39144 -3.85834 1.48261 1.66412 3.17337 3.23430 3.27672 3.29874 3.73822 3.88621 4.10791 4.34810 4.39151 4.68197 4.82954 4.84541 5.00568 5.12011 5.18360 5.25476 5.33295 5.42914 5.50107 5.64572 5.69935 5.86615 5.89021 6.22909 6.26842 6.39646 6.68108 6.75398 6.82424 6.91800 7.01276 7.14795 7.27227 7.52916 8.08199 8.45264 9.14838 9.37862 9.96650 10.64927 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004874 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.585589 B = 5743.732422 C = 6572.279247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.429 5.429 3 C -0.309 4.309 4 H 0.103 0.897 5 C 0.033 3.967 6 N -0.872 5.872 7 Si 0.927 3.073 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.472 3.528 12 O -0.589 6.589 13 C -0.094 4.094 14 C -0.072 4.072 15 C -0.135 4.135 16 C -0.089 4.089 17 C -0.128 4.128 18 C 0.280 3.720 19 O -0.366 6.366 20 C 0.015 3.985 21 C 0.020 3.980 22 O -0.380 6.380 23 C -0.069 4.069 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 -14.011 1.299 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.145 5.145 3 C -0.436 4.436 4 H 0.120 0.880 5 C -0.172 4.172 6 N -0.510 5.510 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.196 1.196 11 C 0.261 3.739 12 O -0.475 6.475 13 C -0.097 4.097 14 C -0.091 4.091 15 C -0.153 4.153 16 C -0.108 4.108 17 C -0.128 4.128 18 C 0.186 3.814 19 O -0.286 6.286 20 C -0.062 4.062 21 C -0.056 4.056 22 O -0.300 6.300 23 C -0.088 4.088 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.009 -13.734 1.314 16.478 hybrid contribution 0.017 0.832 0.050 0.833 sum -8.992 -12.902 1.364 15.785 Atomic orbital electron populations 1.21789 0.81181 0.99324 1.01658 1.43511 1.05626 1.04743 1.60667 1.19666 0.98060 0.82960 1.42949 0.87972 1.25341 0.96559 1.00084 0.95187 1.70015 1.18915 1.29368 1.32672 0.85991 0.79004 0.80580 0.79134 1.19799 1.20879 1.19645 1.17903 0.87364 0.82990 0.85600 1.90607 1.13438 1.86715 1.56738 1.20259 0.95331 0.96237 0.97906 1.21270 0.98855 0.92156 0.96857 1.21004 0.96051 0.97478 1.00742 1.20945 0.95727 0.98304 0.95799 1.19787 0.97527 0.95283 1.00244 1.22668 0.92279 0.85336 0.81143 1.89338 1.62022 1.59452 1.17829 1.24359 0.96004 0.87940 0.97860 1.24194 1.03232 0.95634 0.82578 1.88863 1.84665 1.26500 1.30022 1.21342 0.93527 0.96527 0.97377 0.92080 0.91485 0.94477 0.91974 0.85516 0.85916 0.85581 0.88466 0.90514 0.87355 0.88274 0.90594 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 7.22 59.85 0.43 2.83 16 2 N -0.43 -11.45 3.01 -123.32 -0.37 -11.82 16 3 C -0.31 -8.77 9.30 -15.00 -0.14 -8.91 16 4 H 0.10 3.03 7.41 -52.48 -0.39 2.64 16 5 C 0.03 0.87 4.96 -17.45 -0.09 0.78 16 6 N -0.87 -23.25 10.82 55.50 0.60 -22.65 16 7 Si 0.93 20.71 29.59 -169.99 -5.03 15.67 16 8 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 C 0.47 12.39 7.26 -12.38 -0.09 12.30 16 12 O -0.59 -17.39 16.64 5.28 0.09 -17.31 16 13 C -0.09 -2.01 5.10 -104.97 -0.54 -2.54 16 14 C -0.07 -1.33 9.67 -39.17 -0.38 -1.71 16 15 C -0.13 -2.04 10.03 -39.64 -0.40 -2.44 16 16 C -0.09 -1.34 9.38 -39.48 -0.37 -1.71 16 17 C -0.13 -2.09 5.56 -104.68 -0.58 -2.67 16 18 C 0.28 3.94 4.31 36.01 0.16 4.09 16 19 O -0.37 -5.28 11.22 -59.05 -0.66 -5.94 16 20 C 0.01 0.14 7.95 38.17 0.30 0.44 16 21 C 0.02 0.18 8.07 38.17 0.31 0.49 16 22 O -0.38 -4.71 9.69 -59.05 -0.57 -5.28 16 23 C -0.07 -1.32 7.10 -39.17 -0.28 -1.59 16 24 H 0.06 1.44 6.77 -51.93 -0.35 1.09 16 25 H 0.07 1.59 7.02 -51.93 -0.36 1.23 16 26 H 0.04 0.75 5.53 -51.93 -0.29 0.46 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 28 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.13 1.64 6.99 -52.49 -0.37 1.27 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 2.68 5.91 -52.48 -0.31 2.37 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -33.06 302.99 -7.21 -40.26 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.16 Total: 3.14 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.66 Total: -0.64 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.23 Total: -34.47 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.15 Total: -28.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.06 -7.21 -40.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758012666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.860 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds