Wall clock time and date at job start Mon Mar 30 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36865 * 119.99894 * 2 1 4 4 H 1.08003 * 120.00284 * 198.83860 * 3 2 1 5 5 C 1.39050 * 120.00088 * 18.84430 * 3 2 1 6 6 N 1.31360 * 119.99931 * 18.68881 * 5 3 2 7 7 Si 1.86798 * 119.99973 * 198.69116 * 5 3 2 8 8 H 1.48497 * 109.47425 * 59.99495 * 7 5 3 9 9 H 1.48503 * 109.47149 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47137 * 299.99528 * 7 5 3 11 11 C 1.34775 * 119.99903 * 180.02562 * 2 1 3 12 12 O 1.21594 * 120.00159 * 183.37149 * 11 2 1 13 13 C 1.47726 * 120.00225 * 3.36555 * 11 2 1 14 14 C 1.39664 * 120.15434 * 137.32423 * 13 11 2 15 15 C 1.37913 * 119.85407 * 179.97438 * 14 13 11 16 16 C 1.38395 * 120.14622 * 0.02562 * 15 14 13 17 17 C 1.38358 * 120.30780 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.92400 * 179.97438 * 17 16 15 19 19 O 1.43756 * 109.62716 * 118.90833 * 18 17 16 20 20 C 1.44585 * 104.91588 * 215.71005 * 19 18 17 21 21 C 1.54916 * 101.63668 * 36.26630 * 20 19 18 22 22 O 1.43362 * 109.63052 * 359.69171 * 18 17 16 23 23 C 1.37959 * 120.14948 * 0.02562 * 17 16 15 24 24 H 1.09001 * 109.46850 * 272.36549 * 1 2 3 25 25 H 1.08996 * 109.47341 * 32.36234 * 1 2 3 26 26 H 1.09005 * 109.47224 * 152.36707 * 1 2 3 27 27 H 0.96999 * 120.00215 * 180.02562 * 6 5 3 28 28 H 1.08003 * 120.07351 * 0.02562 * 14 13 11 29 29 H 1.07996 * 119.92839 * 179.72208 * 15 14 13 30 30 H 1.07998 * 119.84916 * 179.97438 * 16 15 14 31 31 H 1.08998 * 109.62681 * 239.29672 * 18 17 16 32 32 H 1.09001 * 111.08654 * 278.15836 * 20 19 18 33 33 H 1.09000 * 110.98164 * 154.33314 * 20 19 18 34 34 H 1.09000 * 110.69534 * 205.95832 * 21 20 19 35 35 H 1.08997 * 110.83776 * 82.82883 * 21 20 19 36 36 H 1.08004 * 120.07161 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1860 1.2104 -0.3020 5 6 1.5100 2.3572 0.3890 6 7 0.4017 2.2987 1.0917 7 14 2.2270 4.0149 -0.0879 8 1 2.2953 4.1175 -1.5678 9 1 1.3637 5.0994 0.4448 10 1 3.5927 4.1456 0.4808 11 6 2.1389 -1.1672 -0.0005 12 8 3.3532 -1.1682 0.0614 13 6 1.4022 -2.4454 -0.0762 14 6 1.8622 -3.4724 -0.9034 15 6 1.1699 -4.6634 -0.9690 16 6 0.0214 -4.8419 -0.2177 17 6 -0.4400 -3.8288 0.6039 18 6 -1.6919 -4.0324 1.4179 19 8 -1.3814 -3.9221 2.8172 20 6 -2.2393 -4.8883 3.4660 21 6 -2.2553 -6.0385 2.4284 22 8 -2.2221 -5.3406 1.1671 23 6 0.2428 -2.6324 0.6790 24 1 -0.3633 0.0424 1.0268 25 1 -0.3634 0.8680 -0.5501 26 1 -0.3634 -0.9105 -0.4767 27 1 -0.0445 3.1161 1.3627 28 1 2.7586 -3.3345 -1.4899 29 1 1.5220 -5.4566 -1.6116 30 1 -0.5172 -5.7764 -0.2730 31 1 -2.4316 -3.2792 1.1464 32 1 -3.2406 -4.4849 3.6168 33 1 -1.8084 -5.2207 4.4105 34 1 -3.1685 -6.6267 2.5193 35 1 -1.3768 -6.6739 2.5403 36 1 -0.1183 -1.8426 1.3211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758012666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:09 Heat of formation + Delta-G solvation = -97.354269 kcal Electronic energy + Delta-G solvation = -21489.385443 eV Core-core repulsion = 18131.712408 eV Total energy + Delta-G solvation = -3357.673034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67710 -40.83822 -39.00896 -36.79536 -36.07609 -33.91579 -33.15445 -31.98614 -30.18840 -28.29104 -26.88049 -25.99492 -24.45630 -23.82678 -22.79053 -20.74920 -19.09524 -18.41496 -18.30417 -17.70318 -17.21644 -16.84307 -16.63550 -16.28873 -15.98982 -15.63585 -15.40810 -14.87944 -14.54296 -14.32233 -14.19414 -13.83754 -13.73977 -13.54171 -13.35204 -13.18217 -12.69013 -12.62071 -12.41312 -12.31689 -12.20359 -12.12422 -11.16154 -11.08181 -10.84561 -10.50714 -9.90564 -9.80927 -9.77077 -8.44080 -6.02347 0.05306 0.30368 1.37906 1.39501 1.50943 1.95994 2.23783 2.46947 2.70296 2.93215 2.97278 3.12512 3.66003 3.78627 3.85382 3.97788 4.09629 4.16160 4.26587 4.31104 4.44871 4.49878 4.54707 4.65429 4.78568 4.86036 4.89974 4.94055 5.01265 5.22259 5.37260 5.40396 5.45328 5.47886 5.92003 6.00496 6.05897 6.38920 7.05908 7.33293 7.91845 8.59113 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004874 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.585589 B = 5743.732422 C = 6572.279247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.443 5.443 3 C -0.356 4.356 4 H 0.075 0.925 5 C 0.003 3.997 6 N -0.886 5.886 7 Si 0.994 3.006 8 H -0.265 1.265 9 H -0.265 1.265 10 H -0.275 1.275 11 C 0.461 3.539 12 O -0.638 6.638 13 C -0.125 4.125 14 C -0.083 4.083 15 C -0.116 4.116 16 C -0.074 4.074 17 C -0.126 4.126 18 C 0.283 3.717 19 O -0.399 6.399 20 C 0.007 3.993 21 C 0.017 3.983 22 O -0.386 6.386 23 C -0.076 4.076 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.279 0.721 28 H 0.122 0.878 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 -15.898 1.157 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.159 5.159 3 C -0.483 4.483 4 H 0.093 0.907 5 C -0.201 4.201 6 N -0.523 5.523 7 Si 0.817 3.183 8 H -0.190 1.190 9 H -0.190 1.190 10 H -0.200 1.200 11 C 0.252 3.748 12 O -0.527 6.527 13 C -0.128 4.128 14 C -0.102 4.102 15 C -0.134 4.134 16 C -0.092 4.092 17 C -0.126 4.126 18 C 0.188 3.812 19 O -0.320 6.320 20 C -0.068 4.068 21 C -0.058 4.058 22 O -0.307 6.307 23 C -0.095 4.095 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.183 0.817 30 H 0.175 0.825 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.099 0.901 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.034 -15.639 1.184 19.176 hybrid contribution 0.560 1.253 0.179 1.384 sum -10.474 -14.385 1.363 17.847 Atomic orbital electron populations 1.21681 0.79359 1.00067 1.01118 1.43757 1.06866 1.04653 1.60599 1.19660 0.97864 0.84820 1.45983 0.90658 1.26172 0.96820 1.02966 0.94115 1.70073 1.19393 1.30773 1.32076 0.84998 0.78164 0.76101 0.79074 1.19015 1.18965 1.19990 1.18755 0.87227 0.84580 0.84210 1.90536 1.15658 1.87820 1.58725 1.19958 0.96850 0.94795 1.01190 1.21372 0.99270 0.92853 0.96728 1.21397 0.95091 0.96716 1.00177 1.21359 0.95161 0.98751 0.93923 1.20099 0.97969 0.94239 1.00318 1.22570 0.91105 0.86574 0.80950 1.89313 1.63509 1.61010 1.18165 1.24696 0.96345 0.87284 0.98476 1.24468 1.05222 0.95304 0.80852 1.88843 1.84293 1.25812 1.31763 1.21151 0.93356 0.97682 0.97350 0.93002 0.92632 0.91767 0.91158 0.86018 0.81676 0.82459 0.87845 0.88887 0.85570 0.84998 0.90057 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.77 7.22 127.77 0.92 6.69 16 2 N -0.44 -24.91 3.01 -662.32 -2.00 -26.90 16 3 C -0.36 -21.29 9.30 84.10 0.78 -20.51 16 4 H 0.08 4.79 7.41 -2.91 -0.02 4.77 16 5 C 0.00 0.15 4.96 84.96 0.42 0.57 16 6 N -0.89 -47.94 10.82 21.68 0.23 -47.70 16 7 Si 0.99 42.98 29.59 68.60 2.03 45.01 16 8 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 9 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 C 0.46 25.63 7.26 86.75 0.63 26.26 16 12 O -0.64 -40.19 16.64 -4.01 -0.07 -40.26 16 13 C -0.12 -5.49 5.10 -20.09 -0.10 -5.59 16 14 C -0.08 -3.05 9.67 22.54 0.22 -2.83 16 15 C -0.12 -3.16 10.03 22.23 0.22 -2.94 16 16 C -0.07 -1.96 9.38 22.34 0.21 -1.75 16 17 C -0.13 -3.89 5.56 -19.90 -0.11 -4.00 16 18 C 0.28 7.37 4.31 71.24 0.31 7.67 16 19 O -0.40 -10.93 11.22 -126.21 -1.42 -12.35 16 20 C 0.01 0.12 7.95 72.64 0.58 0.70 16 21 C 0.02 0.24 8.07 72.64 0.59 0.82 16 22 O -0.39 -8.20 9.69 -126.21 -1.22 -9.43 16 23 C -0.08 -2.95 7.10 22.54 0.16 -2.79 16 24 H 0.05 2.54 6.77 -2.39 -0.02 2.52 16 25 H 0.05 2.72 7.02 -2.39 -0.02 2.71 16 26 H 0.06 2.67 5.53 -2.38 -0.01 2.65 16 27 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.16 3.27 6.99 -2.91 -0.02 3.25 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 4.90 5.91 -2.91 -0.02 4.88 16 Total: -1.00 -75.77 302.99 3.49 -72.29 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.10 Total: 17.05 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.82 Total: 2.30 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.76 Total: -74.60 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -2.71 Total: -62.04 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -75.77 3.49 -72.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758012666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.068 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds