Wall clock time and date at job start Mon Mar 30 2020 02:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00438 * 2 1 4 4 C 1.34774 * 119.99720 * 180.02562 * 2 1 3 5 5 O 1.21288 * 120.00504 * 359.97438 * 4 2 1 6 6 C 1.50701 * 120.00106 * 179.97438 * 4 2 1 7 7 O 1.45196 * 109.47374 * 179.97438 * 6 4 2 8 8 C 1.34780 * 117.00399 * 180.02562 * 7 6 4 9 9 O 1.21505 * 119.99405 * 0.02562 * 8 7 6 10 10 C 1.47501 * 120.00276 * 179.97438 * 8 7 6 11 11 C 1.40072 * 119.90126 * 179.97438 * 10 8 7 12 12 C 1.36300 * 120.10122 * 180.25903 * 11 10 8 13 13 C 1.40903 * 119.89735 * 359.51953 * 12 11 10 14 14 C 1.41086 * 120.09946 * 180.23584 * 13 12 11 15 15 H 1.08001 * 120.00081 * 204.81479 * 14 13 12 16 16 C 1.40248 * 120.00090 * 24.80544 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73033 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73090 * 16 14 13 19 19 H 1.48494 * 109.47173 * 60.00085 * 18 16 14 20 20 H 1.48498 * 109.47155 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47158 * 300.00145 * 18 16 14 22 22 C 1.40902 * 119.79905 * 0.50143 * 13 12 11 23 23 C 1.36295 * 119.90197 * 359.73140 * 22 13 12 24 24 H 1.09001 * 109.46537 * 269.99561 * 1 2 3 25 25 H 1.08998 * 109.47204 * 29.99168 * 1 2 3 26 26 H 1.08997 * 109.47340 * 149.99873 * 1 2 3 27 27 H 1.08999 * 109.47490 * 270.00597 * 3 2 1 28 28 H 1.09001 * 109.46730 * 30.00326 * 3 2 1 29 29 H 1.09003 * 109.47582 * 150.00260 * 3 2 1 30 30 H 1.09003 * 109.47275 * 59.99849 * 6 4 2 31 31 H 1.09002 * 109.47079 * 299.99841 * 6 4 2 32 32 H 1.08002 * 119.94620 * 359.97438 * 11 10 8 33 33 H 1.07995 * 120.04815 * 179.75273 * 12 11 10 34 34 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.04814 * 179.70677 * 22 13 12 36 36 H 1.07997 * 119.95010 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 8 4.1298 -2.5362 -0.0010 8 6 5.4660 -2.7130 -0.0009 9 8 6.2061 -1.7494 -0.0005 10 6 6.0297 -4.0760 -0.0002 11 6 7.4187 -4.2572 -0.0007 12 6 7.9440 -5.5149 -0.0054 13 6 7.0875 -6.6338 0.0005 14 6 7.6267 -7.9375 0.0007 15 1 7.0469 -8.7617 -0.3878 16 6 8.9157 -8.1632 0.5051 17 7 9.4801 -7.2733 1.2770 18 14 9.8255 -9.7364 0.0731 19 1 9.9968 -9.8208 -1.3995 20 1 11.1585 -9.7330 0.7276 21 1 9.0443 -10.9065 0.5484 22 6 5.6910 -6.4466 0.0005 23 6 5.1745 -5.1853 0.0003 24 1 -0.3632 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 2.3792 1.5834 -1.0276 28 1 1.6086 2.0283 0.5139 29 1 3.1501 1.1383 0.5138 30 1 4.0096 -0.6537 0.8889 31 1 4.0089 -0.6533 -0.8911 32 1 8.0743 -3.3990 -0.0020 33 1 9.0150 -5.6536 -0.0098 34 1 10.3715 -7.4295 1.6262 35 1 5.0308 -7.3013 0.0002 36 1 4.1042 -5.0410 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758678083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:38 Heat of formation + Delta-G solvation = -101.184330 kcal Electronic energy + Delta-G solvation = -20365.102129 eV Core-core repulsion = 17007.263011 eV Total energy + Delta-G solvation = -3357.839118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18849 -39.22609 -37.41327 -35.81627 -35.44836 -33.96037 -30.48829 -29.83576 -29.42368 -27.71659 -26.26878 -25.31958 -22.33020 -21.06361 -19.90864 -19.58951 -17.60494 -17.44450 -16.75257 -16.55490 -16.27465 -15.54124 -15.32938 -15.30300 -14.04678 -13.68509 -13.54471 -13.36828 -13.01385 -12.96337 -12.86562 -12.48001 -12.39118 -12.22705 -12.17771 -11.83818 -11.38348 -11.25568 -11.01980 -10.69101 -10.32787 -10.14717 -9.91759 -9.56577 -9.49733 -9.37780 -8.95505 -7.73848 -7.63210 -7.09043 -4.67213 2.04425 2.46400 2.47140 2.88273 2.92812 2.96023 3.05503 3.52092 3.61095 3.71215 4.37045 4.46907 4.74897 4.97413 5.04542 5.13957 5.14198 5.34716 5.38041 5.53144 5.57244 5.86157 6.16351 6.24451 6.29327 6.74965 6.82201 6.90770 7.03988 7.07256 7.08732 7.42856 7.63140 7.79494 7.87017 8.00268 8.02290 8.36472 8.57155 8.67175 8.71480 9.82196 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048430 B = 0.003146 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.010127 B = 8897.265270 C = 9378.741157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.625 5.625 3 C 0.074 3.926 4 C 0.515 3.485 5 O -0.512 6.512 6 C 0.052 3.948 7 O -0.338 6.338 8 C 0.515 3.485 9 O -0.552 6.552 10 C -0.275 4.275 11 C -0.031 4.031 12 C -0.185 4.185 13 C 0.132 3.868 14 C -0.434 4.434 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.763 5.763 18 Si 0.917 3.083 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.240 4.240 23 C -0.025 4.025 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.290 0.710 35 H 0.100 0.900 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 11.398 -1.546 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.362 5.362 3 C -0.069 4.069 4 C 0.302 3.698 5 O -0.385 6.385 6 C -0.026 4.026 7 O -0.255 6.255 8 C 0.368 3.632 9 O -0.446 6.446 10 C -0.277 4.277 11 C -0.050 4.050 12 C -0.204 4.204 13 C 0.129 3.871 14 C -0.461 4.461 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.386 5.386 18 Si 0.740 3.260 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.259 4.259 23 C -0.044 4.044 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.813 11.150 -1.386 14.280 hybrid contribution 0.477 -0.229 -0.010 0.529 sum -8.336 10.921 -1.396 13.810 Atomic orbital electron populations 1.21637 0.78641 1.03231 1.01966 1.47651 1.07236 1.06082 1.75268 1.21899 0.97495 0.85213 1.02337 1.20303 0.89383 0.83573 0.76556 1.90748 1.69845 1.30669 1.47285 1.22464 0.91100 0.84784 1.04228 1.86688 1.26028 1.27174 1.85618 1.21702 0.78489 0.91054 0.71969 1.90693 1.60017 1.43003 1.50899 1.18168 0.93622 0.87322 1.28636 1.20442 0.92245 0.97050 0.95286 1.20973 1.00031 0.90839 1.08589 1.17855 0.91113 0.93423 0.84725 1.19913 0.98638 0.94824 1.32676 0.89446 1.26173 0.97377 0.99012 0.92455 1.69732 1.14853 1.34410 1.19573 0.86207 0.78517 0.80963 0.80316 1.18347 1.19949 1.18554 1.20731 0.95004 0.95441 1.14706 1.20621 0.97752 0.92328 0.93704 0.92634 0.91129 0.90348 0.92116 0.90619 0.90616 0.88759 0.88757 0.88000 0.85897 0.89899 0.88139 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.44 59.85 0.62 1.37 16 2 N -0.63 -6.61 3.27 -189.52 -0.62 -7.23 16 3 C 0.07 0.49 10.24 59.84 0.61 1.10 16 4 C 0.51 7.69 7.75 -10.99 -0.09 7.61 16 5 O -0.51 -9.80 16.08 -14.11 -0.23 -10.02 16 6 C 0.05 0.80 4.51 36.01 0.16 0.96 16 7 O -0.34 -6.91 8.98 -47.39 -0.43 -7.34 16 8 C 0.52 11.60 7.89 34.51 0.27 11.87 16 9 O -0.55 -12.77 16.11 -19.27 -0.31 -13.08 16 10 C -0.27 -6.64 5.89 -104.75 -0.62 -7.25 16 11 C -0.03 -0.77 9.52 -39.59 -0.38 -1.15 16 12 C -0.19 -4.72 8.63 -39.27 -0.34 -5.06 16 13 C 0.13 3.40 5.57 -106.80 -0.60 2.80 16 14 C -0.43 -10.73 9.04 -37.75 -0.34 -11.07 16 15 H 0.09 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 17 N -0.76 -18.37 10.95 55.56 0.61 -17.76 16 18 Si 0.92 17.13 29.60 -169.99 -5.03 12.10 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 C -0.24 -5.79 9.73 -39.27 -0.38 -6.18 16 23 C -0.03 -0.60 9.55 -39.59 -0.38 -0.98 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 26 H 0.08 0.80 7.42 -51.93 -0.39 0.41 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 29 H 0.08 0.50 6.44 -51.93 -0.33 0.16 16 30 H 0.09 1.28 7.40 -51.93 -0.38 0.89 16 31 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.10 2.39 7.63 -52.49 -0.40 1.99 16 33 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 34 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.11 2.33 7.59 -52.49 -0.40 1.94 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -31.02 317.65 -7.05 -38.07 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.30 Total: 4.84 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.53 Total: -4.37 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: -0.01 Total: -24.99 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.96 Total: -30.44 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.02 -7.05 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758678083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.110 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds