Wall clock time and date at job start Mon Mar 30 2020 02:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00438 * 2 1 4 4 C 1.34774 * 119.99720 * 180.02562 * 2 1 3 5 5 O 1.21288 * 120.00504 * 359.97438 * 4 2 1 6 6 C 1.50701 * 120.00106 * 179.97438 * 4 2 1 7 7 O 1.45196 * 109.47374 * 179.97438 * 6 4 2 8 8 C 1.34780 * 117.00399 * 180.02562 * 7 6 4 9 9 O 1.21505 * 119.99405 * 0.02562 * 8 7 6 10 10 C 1.47501 * 120.00276 * 179.97438 * 8 7 6 11 11 C 1.40072 * 119.90126 * 179.97438 * 10 8 7 12 12 C 1.36300 * 120.10122 * 180.25903 * 11 10 8 13 13 C 1.40903 * 119.89735 * 359.51953 * 12 11 10 14 14 C 1.41086 * 120.09946 * 180.23584 * 13 12 11 15 15 H 1.08001 * 120.00081 * 204.81479 * 14 13 12 16 16 C 1.40248 * 120.00090 * 24.80544 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73033 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73090 * 16 14 13 19 19 H 1.48494 * 109.47173 * 60.00085 * 18 16 14 20 20 H 1.48498 * 109.47155 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47158 * 300.00145 * 18 16 14 22 22 C 1.40902 * 119.79905 * 0.50143 * 13 12 11 23 23 C 1.36295 * 119.90197 * 359.73140 * 22 13 12 24 24 H 1.09001 * 109.46537 * 269.99561 * 1 2 3 25 25 H 1.08998 * 109.47204 * 29.99168 * 1 2 3 26 26 H 1.08997 * 109.47340 * 149.99873 * 1 2 3 27 27 H 1.08999 * 109.47490 * 270.00597 * 3 2 1 28 28 H 1.09001 * 109.46730 * 30.00326 * 3 2 1 29 29 H 1.09003 * 109.47582 * 150.00260 * 3 2 1 30 30 H 1.09003 * 109.47275 * 59.99849 * 6 4 2 31 31 H 1.09002 * 109.47079 * 299.99841 * 6 4 2 32 32 H 1.08002 * 119.94620 * 359.97438 * 11 10 8 33 33 H 1.07995 * 120.04815 * 179.75273 * 12 11 10 34 34 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.04814 * 179.70677 * 22 13 12 36 36 H 1.07997 * 119.95010 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 8 4.1298 -2.5362 -0.0010 8 6 5.4660 -2.7130 -0.0009 9 8 6.2061 -1.7494 -0.0005 10 6 6.0297 -4.0760 -0.0002 11 6 7.4187 -4.2572 -0.0007 12 6 7.9440 -5.5149 -0.0054 13 6 7.0875 -6.6338 0.0005 14 6 7.6267 -7.9375 0.0007 15 1 7.0469 -8.7617 -0.3878 16 6 8.9157 -8.1632 0.5051 17 7 9.4801 -7.2733 1.2770 18 14 9.8255 -9.7364 0.0731 19 1 9.9968 -9.8208 -1.3995 20 1 11.1585 -9.7330 0.7276 21 1 9.0443 -10.9065 0.5484 22 6 5.6910 -6.4466 0.0005 23 6 5.1745 -5.1853 0.0003 24 1 -0.3632 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 2.3792 1.5834 -1.0276 28 1 1.6086 2.0283 0.5139 29 1 3.1501 1.1383 0.5138 30 1 4.0096 -0.6537 0.8889 31 1 4.0089 -0.6533 -0.8911 32 1 8.0743 -3.3990 -0.0020 33 1 9.0150 -5.6536 -0.0098 34 1 10.3715 -7.4295 1.6262 35 1 5.0308 -7.3013 0.0002 36 1 4.1042 -5.0410 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758678083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:37 Heat of formation + Delta-G solvation = -118.418484 kcal Electronic energy + Delta-G solvation = -20365.849458 eV Core-core repulsion = 17007.263011 eV Total energy + Delta-G solvation = -3358.586447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58761 -40.63292 -39.23904 -37.27308 -36.63922 -35.77936 -32.23874 -31.54903 -30.79764 -28.58650 -27.85974 -26.38791 -24.07828 -22.94070 -21.66011 -20.64426 -19.43185 -18.95302 -18.08897 -17.80332 -17.63636 -17.11081 -16.72134 -16.51032 -15.77195 -15.25278 -15.00528 -14.70737 -14.50543 -14.06173 -13.95896 -13.88559 -13.56599 -13.47038 -13.42722 -13.19554 -12.90491 -12.85150 -12.67758 -12.40246 -11.86036 -11.82787 -11.44587 -11.34525 -11.16198 -11.02285 -9.80957 -9.65291 -9.54600 -8.85978 -6.56654 0.20980 1.12774 1.31711 1.33631 1.37036 1.41876 1.53417 1.85859 2.14778 2.29532 2.66625 3.32848 3.61087 3.92702 3.98936 4.18307 4.25819 4.34777 4.39637 4.43833 4.47672 4.74289 4.89709 4.90146 4.91641 4.96493 5.12308 5.19218 5.27151 5.41942 5.54013 5.75609 5.90289 5.96219 6.10724 6.13913 6.47467 6.68643 6.80347 6.90289 6.98062 8.08766 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048430 B = 0.003146 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.010127 B = 8897.265270 C = 9378.741157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.614 5.614 3 C 0.064 3.936 4 C 0.511 3.489 5 O -0.567 6.567 6 C 0.046 3.954 7 O -0.351 6.351 8 C 0.523 3.477 9 O -0.561 6.561 10 C -0.293 4.293 11 C -0.036 4.036 12 C -0.201 4.201 13 C 0.106 3.894 14 C -0.457 4.457 15 H 0.096 0.904 16 C 0.034 3.966 17 N -0.792 5.792 18 Si 0.993 3.007 19 H -0.256 1.256 20 H -0.264 1.264 21 H -0.254 1.254 22 C -0.251 4.251 23 C -0.024 4.024 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.300 0.700 35 H 0.114 0.886 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 12.203 -1.685 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.349 5.349 3 C -0.078 4.078 4 C 0.299 3.701 5 O -0.446 6.446 6 C -0.031 4.031 7 O -0.267 6.267 8 C 0.375 3.625 9 O -0.457 6.457 10 C -0.295 4.295 11 C -0.055 4.055 12 C -0.221 4.221 13 C 0.102 3.898 14 C -0.483 4.483 15 H 0.114 0.886 16 C -0.186 4.186 17 N -0.414 5.414 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.189 1.189 21 H -0.178 1.178 22 C -0.270 4.270 23 C -0.042 4.042 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.080 12.036 -1.520 15.153 hybrid contribution 0.470 -0.313 0.063 0.569 sum -8.610 11.723 -1.457 14.618 Atomic orbital electron populations 1.21842 0.77273 1.04017 1.02798 1.47784 1.08250 1.06036 1.72791 1.22235 0.97785 0.83820 1.03921 1.20313 0.89116 0.84205 0.76503 1.90725 1.70574 1.32784 1.50476 1.22861 0.91685 0.82409 1.06166 1.86625 1.24514 1.30525 1.85084 1.21320 0.79236 0.90243 0.71687 1.90671 1.60543 1.43105 1.51345 1.18399 0.93671 0.88716 1.28763 1.20529 0.92838 0.96917 0.95191 1.20960 0.99718 0.91412 1.09972 1.18192 0.91887 0.94126 0.85550 1.20261 1.00077 0.94765 1.33213 0.88637 1.27095 0.97474 1.02494 0.91565 1.69764 1.15599 1.36274 1.19786 0.85067 0.77343 0.76378 0.79986 1.18053 1.18854 1.17807 1.20926 0.94853 0.96236 1.15006 1.20746 0.98304 0.92076 0.93103 0.91792 0.87372 0.92501 0.90501 0.87656 0.90448 0.86811 0.86746 0.87521 0.86721 0.88840 0.86797 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.44 127.77 1.33 2.57 16 2 N -0.61 -11.67 3.27 -871.89 -2.85 -14.53 16 3 C 0.06 0.63 10.24 127.77 1.31 1.94 16 4 C 0.51 14.89 7.75 87.66 0.68 15.57 16 5 O -0.57 -22.04 16.08 15.74 0.25 -21.79 16 6 C 0.05 1.34 4.51 71.24 0.32 1.66 16 7 O -0.35 -14.27 8.98 -50.52 -0.45 -14.73 16 8 C 0.52 23.50 7.89 70.26 0.55 24.06 16 9 O -0.56 -25.66 16.11 19.82 0.32 -25.34 16 10 C -0.29 -14.34 5.89 -19.95 -0.12 -14.45 16 11 C -0.04 -1.81 9.52 22.26 0.21 -1.59 16 12 C -0.20 -10.56 8.63 22.47 0.19 -10.36 16 13 C 0.11 5.55 5.57 -21.28 -0.12 5.43 16 14 C -0.46 -22.77 9.04 23.46 0.21 -22.56 16 15 H 0.10 4.45 7.91 -2.91 -0.02 4.42 16 16 C 0.03 1.57 5.14 85.36 0.44 2.01 16 17 N -0.79 -38.24 10.95 21.88 0.24 -38.00 16 18 Si 0.99 34.23 29.60 68.60 2.03 36.26 16 19 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 20 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 21 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 22 C -0.25 -12.34 9.73 22.47 0.22 -12.12 16 23 C -0.02 -1.13 9.55 22.26 0.21 -0.92 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 0.82 8.07 -2.39 -0.02 0.80 16 26 H 0.06 1.13 7.42 -2.39 -0.02 1.11 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 29 H 0.08 0.78 6.44 -2.39 -0.02 0.77 16 30 H 0.11 2.88 7.40 -2.39 -0.02 2.86 16 31 H 0.11 2.88 8.10 -2.39 -0.02 2.86 16 32 H 0.11 5.12 7.63 -2.91 -0.02 5.10 16 33 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 34 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 35 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 36 H 0.12 5.24 7.59 -2.91 -0.02 5.22 16 Total: -1.00 -68.26 317.65 6.08 -62.18 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.10 Total: 24.70 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.45 Total: -8.76 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -2.61 Total: -52.53 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: 0.12 Total: -61.85 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -68.26 6.08 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758678083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.240 kcal (2) G-P(sol) polarization free energy of solvation -68.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds