Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47188 * 2 1 4 4 C 1.50693 * 109.47136 * 120.00094 * 2 1 3 5 5 H 1.08009 * 120.00052 * 119.99792 * 4 2 1 6 6 C 1.37875 * 120.00201 * 300.00209 * 4 2 1 7 7 N 1.31520 * 120.00504 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99787 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47346 * 90.00502 * 8 6 4 10 10 H 1.48509 * 109.47052 * 210.00488 * 8 6 4 11 11 H 1.48504 * 109.47158 * 329.99921 * 8 6 4 12 12 O 1.45201 * 109.47151 * 240.00181 * 2 1 3 13 13 C 1.34661 * 117.00203 * 89.99699 * 12 2 1 14 14 O 1.21427 * 120.00027 * 0.02562 * 13 12 2 15 15 C 1.48062 * 120.00360 * 180.02562 * 13 12 2 16 16 C 1.39662 * 120.89561 * 0.02562 * 15 13 12 17 17 C 1.38850 * 118.94458 * 179.97438 * 16 15 13 18 18 O 1.35686 * 119.61728 * 180.02562 * 17 16 15 19 19 N 1.32198 * 120.75675 * 0.02562 * 17 16 15 20 20 C 1.31874 * 121.98735 * 359.97438 * 19 17 16 21 21 C 1.50705 * 119.50895 * 180.02562 * 20 19 17 22 22 C 1.52996 * 117.49537 * 163.62203 * 21 20 19 23 23 C 1.53003 * 117.49289 * 95.00150 * 21 20 19 24 24 C 1.38019 * 120.97826 * 0.02562 * 20 19 17 25 25 H 1.09001 * 109.47091 * 300.00156 * 1 2 3 26 26 H 1.08999 * 109.47072 * 59.99975 * 1 2 3 27 27 H 1.09002 * 109.47188 * 180.02562 * 1 2 3 28 28 H 0.96991 * 120.00045 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.52455 * 359.97438 * 16 15 13 30 30 H 0.96696 * 114.00348 * 270.00025 * 18 17 16 31 31 H 1.08998 * 115.55256 * 309.33740 * 21 20 19 32 32 H 1.08994 * 117.50421 * 0.02562 * 22 21 20 33 33 H 1.08997 * 117.49540 * 145.02447 * 22 21 20 34 34 H 1.08998 * 117.49736 * 214.97335 * 23 21 20 35 35 H 1.08999 * 117.50293 * 359.97438 * 23 21 20 36 36 H 1.08003 * 120.43409 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5566 8 14 0.6259 1.2797 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9773 1.9953 3.9071 11 1 0.8492 2.1773 1.4922 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0664 -2.2847 14 8 1.9977 1.2602 -2.2538 15 6 2.7101 -0.5635 -3.5309 16 6 2.9688 -1.9348 -3.5876 17 6 3.4289 -2.4832 -4.7773 18 8 3.6841 -3.8140 -4.8478 19 7 3.6212 -1.7236 -5.8421 20 6 3.3878 -0.4258 -5.8258 21 6 3.6257 0.3869 -7.0724 22 6 2.9952 1.7793 -7.1388 23 6 2.4275 0.6411 -7.9892 24 6 2.9289 0.1991 -4.6840 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9040 -0.5275 4.4375 29 1 2.8134 -2.5586 -2.7198 30 1 4.5911 -4.0535 -4.6134 31 1 4.5997 0.2521 -7.5428 32 1 2.4087 2.1078 -6.2809 33 1 3.5545 2.5610 -7.6529 34 1 2.6133 0.6741 -9.0628 35 1 1.4673 0.2202 -7.6910 36 1 2.7402 1.2626 -4.6805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770874077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -57.067426 kcal Electronic energy + Delta-G solvation = -20845.789497 eV Core-core repulsion = 17489.863432 eV Total energy + Delta-G solvation = -3355.926065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97268 -39.60192 -38.03236 -36.49760 -36.00704 -33.41906 -32.76737 -30.68353 -30.18959 -25.56990 -25.22554 -24.68821 -22.74244 -22.02071 -21.29362 -19.89469 -18.64291 -17.44645 -17.34475 -16.62398 -16.30629 -15.74766 -15.53753 -15.35496 -15.34837 -14.65375 -14.43646 -13.44063 -13.12049 -12.90374 -12.52240 -12.39987 -12.19998 -12.03462 -11.94283 -11.67546 -11.63306 -10.97921 -10.94188 -10.71351 -10.43635 -10.29895 -10.00463 -9.92541 -9.78175 -9.56794 -9.23080 -8.95491 -8.76244 -6.29745 -4.33203 0.51128 0.77906 2.69527 3.05870 3.13489 3.19742 3.26176 3.27334 3.56764 3.69122 4.13448 4.19947 4.56783 4.63672 4.79213 4.84653 4.89830 4.98409 5.01614 5.20455 5.38511 5.45296 5.56480 5.63094 5.82840 5.86344 5.97552 6.05940 6.18961 6.22665 6.30123 6.47987 6.88950 7.18601 7.30547 7.38259 7.68740 8.04820 8.41245 8.75632 9.26327 10.82169 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.004316 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.639446 B = 6485.748158 C = 7340.159572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.192 3.808 3 H 0.049 0.951 4 C -0.528 4.528 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.879 3.121 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.262 1.262 12 O -0.331 6.331 13 C 0.498 3.502 14 O -0.506 6.506 15 C -0.047 4.047 16 C -0.132 4.132 17 C 0.308 3.692 18 O -0.477 6.477 19 N -0.482 5.482 20 C 0.173 3.827 21 C -0.108 4.108 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.124 4.124 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.270 0.730 29 H 0.162 0.838 30 H 0.402 0.598 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 1.374 -19.489 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.138 3.862 3 H 0.066 0.934 4 C -0.566 4.566 5 H 0.106 0.894 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.708 3.292 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.187 1.187 12 O -0.246 6.246 13 C 0.341 3.659 14 O -0.396 6.396 15 C -0.056 4.056 16 C -0.153 4.153 17 C 0.129 3.871 18 O -0.284 6.284 19 N -0.201 5.201 20 C 0.036 3.964 21 C -0.127 4.127 22 C -0.210 4.210 23 C -0.198 4.198 24 C -0.143 4.143 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.180 0.820 30 H 0.260 0.740 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.145 1.210 -20.069 20.220 hybrid contribution -0.450 1.046 1.266 1.703 sum 1.696 2.256 -18.803 19.014 Atomic orbital electron populations 1.22543 0.98220 1.02086 1.00000 1.21035 0.90646 0.94528 0.79955 0.93374 1.20744 1.33696 1.15005 0.87115 0.89377 1.24717 0.95590 0.96729 0.95187 1.69827 1.44486 1.39882 0.98048 0.86977 0.80802 0.83571 0.77892 1.19890 1.21549 1.18699 1.86561 1.75414 1.42259 1.20376 1.20879 0.75241 0.85228 0.84531 1.90777 1.48284 1.15940 1.84579 1.19603 0.99796 0.93530 0.92710 1.22598 0.98729 0.94810 0.99194 1.18923 0.96197 0.84386 0.87641 1.84804 1.35556 1.16788 1.91246 1.66643 1.16522 1.06163 1.30816 1.19900 0.94925 0.88080 0.93510 1.20748 0.99375 0.97151 0.95391 1.23161 1.03602 0.91092 1.03105 1.22993 0.97220 1.02037 0.97593 1.22104 0.98369 1.02396 0.91474 0.92314 0.94338 0.91595 0.91942 0.82020 0.73988 0.85687 0.87885 0.87720 0.87981 0.88558 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.03 37.16 0.34 -3.48 16 2 C 0.19 4.72 2.16 -27.88 -0.06 4.66 16 3 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 4 C -0.53 -14.77 9.48 -34.44 -0.33 -15.10 16 5 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 6 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 7 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 8 Si 0.88 21.16 24.37 -169.99 -4.14 17.02 16 9 H -0.27 -6.29 6.87 56.52 0.39 -5.90 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.26 -6.20 6.53 56.52 0.37 -5.84 16 12 O -0.33 -7.33 9.22 -40.39 -0.37 -7.70 16 13 C 0.50 9.82 7.90 34.76 0.27 10.10 16 14 O -0.51 -10.85 15.70 -19.21 -0.30 -11.16 16 15 C -0.05 -0.75 5.91 -104.69 -0.62 -1.37 16 16 C -0.13 -1.91 9.64 -38.82 -0.37 -2.28 16 17 C 0.31 4.14 7.74 -17.17 -0.13 4.00 16 18 O -0.48 -5.46 13.56 -18.76 -0.25 -5.71 16 19 N -0.48 -6.60 10.27 -9.60 -0.10 -6.70 16 20 C 0.17 2.18 6.45 -82.65 -0.53 1.65 16 21 C -0.11 -1.03 6.21 -91.77 -0.57 -1.60 16 22 C -0.17 -1.37 9.79 -26.73 -0.26 -1.63 16 23 C -0.16 -1.33 10.23 -26.73 -0.27 -1.60 16 24 C -0.12 -1.69 8.92 -39.02 -0.35 -2.04 16 25 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.16 2.29 7.71 -52.49 -0.40 1.88 16 30 H 0.40 2.52 9.06 45.56 0.41 2.94 16 31 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 0.87 6.38 -51.93 -0.33 0.54 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.15 1.94 5.92 -52.48 -0.31 1.63 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -32.42 310.26 -5.97 -38.40 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.27 Total: 3.05 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.99 Total: -6.50 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.68 Total: -32.08 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.93 Total: -24.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.42 -5.97 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770874077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.671 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds