Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00131 * 2 1 4 4 O 1.21280 * 119.99809 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00401 * 179.97438 * 3 2 1 6 6 O 1.45191 * 109.47434 * 179.97438 * 5 3 2 7 7 C 1.34225 * 117.00135 * 179.97438 * 6 5 3 8 8 O 1.20821 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47474 * 180.02562 * 9 7 6 11 11 C 1.37633 * 120.12442 * 264.99900 * 10 9 7 12 12 C 1.38620 * 120.24819 * 179.97438 * 11 10 9 13 13 C 1.38653 * 120.49963 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.24949 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12861 * 84.72291 * 10 9 7 16 16 C 1.41396 * 120.24692 * 0.02562 * 15 10 9 17 17 H 1.08002 * 119.99440 * 333.89889 * 16 15 10 18 18 C 1.39936 * 120.00256 * 153.89938 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.70459 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.70691 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47003 * 120.00050 * 20 18 16 23 23 H 1.48501 * 109.47005 * 240.00090 * 20 18 16 24 24 H 1.09000 * 109.47288 * 60.00396 * 1 2 3 25 25 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 300.00176 * 1 2 3 27 27 H 0.97002 * 120.00060 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46896 * 59.99795 * 5 3 2 29 29 H 1.08997 * 109.46958 * 300.00462 * 5 3 2 30 30 H 1.09007 * 109.46910 * 300.00002 * 9 7 6 31 31 H 1.08998 * 109.47456 * 59.99778 * 9 7 6 32 32 H 1.08008 * 119.87960 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.74938 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.87746 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.12586 * 179.97438 * 14 13 12 36 36 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 8 4.1299 2.5361 -0.0001 7 6 5.4605 2.7120 0.0008 8 8 6.1966 1.7539 0.0017 9 6 6.0366 4.1046 0.0007 10 6 7.5415 4.0257 0.0012 11 6 8.2364 4.0935 1.1873 12 6 9.6206 4.0207 1.1909 13 6 10.3209 3.8797 0.0025 14 6 9.6470 3.8109 -1.1952 15 6 8.2413 3.8768 -1.2102 16 6 7.5379 3.8008 -2.4344 17 1 6.5203 3.4391 -2.4509 18 6 8.1600 4.1940 -3.6246 19 7 9.2486 4.9185 -3.5853 20 14 7.4361 3.6846 -5.2696 21 1 6.2120 2.8754 -5.0424 22 1 7.0891 4.8967 -6.0543 23 1 8.4316 2.8774 -6.0198 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 4.0095 0.6532 -0.8891 29 1 4.0088 0.6535 0.8908 30 1 5.7013 4.6364 -0.8898 31 1 5.7000 4.6371 0.8902 32 1 7.7010 4.2029 2.1190 33 1 10.1577 4.0751 2.1262 34 1 11.3994 3.8236 0.0170 35 1 10.1945 3.7014 -2.1197 36 1 9.6801 5.1908 -4.4102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776884102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -105.898132 kcal Electronic energy + Delta-G solvation = -20845.845810 eV Core-core repulsion = 17487.802286 eV Total energy + Delta-G solvation = -3358.043524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26711 -39.31958 -37.60719 -35.81142 -34.76904 -33.66418 -31.89109 -29.71331 -29.47320 -27.18190 -25.85464 -24.98009 -21.36437 -20.96108 -20.72608 -19.38710 -17.67772 -17.22434 -17.17971 -16.52813 -15.96401 -15.50943 -15.18817 -15.03209 -14.48573 -13.90675 -13.67193 -13.62191 -13.25181 -12.64063 -12.58783 -12.44537 -12.26401 -11.80635 -11.59054 -11.23404 -11.11004 -11.01619 -10.73525 -10.45341 -10.41207 -10.06199 -9.79201 -9.52908 -9.41363 -9.40759 -9.19653 -7.38119 -7.35071 -6.77480 -4.39561 2.39438 2.43309 2.78066 2.88423 2.97234 3.07012 3.12450 3.24121 3.62108 3.92317 4.52215 4.62852 4.94982 5.06373 5.12140 5.24826 5.46465 5.51603 5.74785 5.96476 6.02661 6.09459 6.25655 6.41592 6.47734 6.69778 6.86536 7.05115 7.16631 7.25183 7.37238 7.59911 7.86922 7.99376 8.01473 8.08688 8.26445 8.39054 8.60761 8.86691 8.95913 10.16465 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.005076 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.055407 B = 5515.267353 C = 6853.857022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.737 5.737 3 C 0.515 3.485 4 O -0.515 6.515 5 C 0.046 3.954 6 O -0.343 6.343 7 C 0.461 3.539 8 O -0.492 6.492 9 C -0.040 4.040 10 C -0.195 4.195 11 C -0.076 4.076 12 C -0.240 4.240 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.130 3.870 16 C -0.458 4.458 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.791 5.791 20 Si 0.904 3.096 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.272 1.272 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.404 0.596 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 -8.220 3.811 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.391 5.391 3 C 0.300 3.700 4 O -0.389 6.389 5 C -0.032 4.032 6 O -0.261 6.261 7 C 0.303 3.697 8 O -0.378 6.378 9 C -0.077 4.077 10 C -0.197 4.197 11 C -0.094 4.094 12 C -0.259 4.259 13 C -0.122 4.122 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.487 4.487 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.417 5.417 20 Si 0.728 3.272 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.197 1.197 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.238 0.762 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.176 -7.617 3.648 14.008 hybrid contribution 0.038 -0.886 -0.803 1.196 sum -11.138 -8.503 2.845 14.299 Atomic orbital electron populations 1.21539 0.79010 1.02282 1.02551 1.45641 1.07915 1.08439 1.77120 1.20288 0.89288 0.84044 0.76391 1.90749 1.69964 1.31036 1.47102 1.22495 0.91186 0.84671 1.04812 1.86635 1.26373 1.27944 1.85107 1.24682 0.78789 0.94290 0.71906 1.90640 1.59906 1.42919 1.44291 1.19998 0.94327 0.88761 1.04616 1.19053 0.90795 1.15615 0.94229 1.20335 0.94053 0.99653 0.95400 1.20317 0.93744 1.15513 0.96347 1.20707 0.97390 1.00692 0.93457 1.21310 0.94605 1.05379 0.96472 1.17354 0.91867 0.86673 0.91308 1.19533 1.00129 1.38103 0.90982 0.90746 1.25879 0.94294 0.92493 1.01325 1.69821 1.16677 1.25035 1.30128 0.86328 0.80198 0.79405 0.81259 1.18472 1.19851 1.19661 0.92060 0.90484 0.92103 0.76237 0.88314 0.88505 0.87215 0.89100 0.89486 0.89492 0.89441 0.86393 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.54 5.71 -67.08 -0.38 -6.92 16 3 C 0.51 6.94 7.91 -10.99 -0.09 6.85 16 4 O -0.51 -9.18 16.50 -14.10 -0.23 -9.41 16 5 C 0.05 0.64 5.94 36.01 0.21 0.86 16 6 O -0.34 -6.27 9.75 -45.89 -0.45 -6.72 16 7 C 0.46 9.38 7.57 36.01 0.27 9.65 16 8 O -0.49 -11.20 15.78 -18.75 -0.30 -11.50 16 9 C -0.04 -0.81 5.29 -29.03 -0.15 -0.96 16 10 C -0.20 -4.67 4.43 -103.91 -0.46 -5.13 16 11 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 12 C -0.24 -5.48 10.05 -39.29 -0.39 -5.87 16 13 C -0.10 -2.49 10.02 -39.66 -0.40 -2.89 16 14 C -0.16 -4.16 8.69 -38.87 -0.34 -4.50 16 15 C 0.13 3.45 5.56 -106.82 -0.59 2.85 16 16 C -0.46 -11.99 8.14 -37.75 -0.31 -12.30 16 17 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 18 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 19 N -0.79 -20.22 10.95 55.55 0.61 -19.62 16 20 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.40 2.25 8.83 -40.82 -0.36 1.89 16 28 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 29 H 0.10 1.16 8.13 -51.93 -0.42 0.73 16 30 H 0.11 2.24 7.08 -51.92 -0.37 1.87 16 31 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 32 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 3.18 6.20 -52.49 -0.33 2.85 16 36 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 318.75 15.07 4.80 4.80 Total: -1.00 -32.75 318.75 -7.39 -40.14 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.34 Total: 5.84 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.08 Total: -10.40 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.23 Total: -26.54 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.98 Total: -27.63 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.75 -7.39 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776884102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.754 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds