Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 120.00131 * 2 1 4 4 O 1.21280 * 119.99809 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00401 * 179.97438 * 3 2 1 6 6 O 1.45191 * 109.47434 * 179.97438 * 5 3 2 7 7 C 1.34225 * 117.00135 * 179.97438 * 6 5 3 8 8 O 1.20821 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47474 * 180.02562 * 9 7 6 11 11 C 1.37633 * 120.12442 * 264.99900 * 10 9 7 12 12 C 1.38620 * 120.24819 * 179.97438 * 11 10 9 13 13 C 1.38653 * 120.49963 * 0.02562 * 12 11 10 14 14 C 1.37603 * 120.24949 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12861 * 84.72291 * 10 9 7 16 16 C 1.41396 * 120.24692 * 0.02562 * 15 10 9 17 17 H 1.08002 * 119.99440 * 333.89889 * 16 15 10 18 18 C 1.39936 * 120.00256 * 153.89938 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.70459 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.70691 * 18 16 15 21 21 H 1.48494 * 109.47040 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47003 * 120.00050 * 20 18 16 23 23 H 1.48501 * 109.47005 * 240.00090 * 20 18 16 24 24 H 1.09000 * 109.47288 * 60.00396 * 1 2 3 25 25 H 1.09001 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 300.00176 * 1 2 3 27 27 H 0.97002 * 120.00060 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46896 * 59.99795 * 5 3 2 29 29 H 1.08997 * 109.46958 * 300.00462 * 5 3 2 30 30 H 1.09007 * 109.46910 * 300.00002 * 9 7 6 31 31 H 1.08998 * 109.47456 * 59.99778 * 9 7 6 32 32 H 1.08008 * 119.87960 * 0.02562 * 11 10 9 33 33 H 1.07995 * 119.74938 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.87746 * 180.02562 * 13 12 11 35 35 H 1.08001 * 120.12586 * 179.97438 * 14 13 12 36 36 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0006 6 8 4.1299 2.5361 -0.0001 7 6 5.4605 2.7120 0.0008 8 8 6.1966 1.7539 0.0017 9 6 6.0366 4.1046 0.0007 10 6 7.5415 4.0257 0.0012 11 6 8.2364 4.0935 1.1873 12 6 9.6206 4.0207 1.1909 13 6 10.3209 3.8797 0.0025 14 6 9.6470 3.8109 -1.1952 15 6 8.2413 3.8768 -1.2102 16 6 7.5379 3.8008 -2.4344 17 1 6.5203 3.4391 -2.4509 18 6 8.1600 4.1940 -3.6246 19 7 9.2486 4.9185 -3.5853 20 14 7.4361 3.6846 -5.2696 21 1 6.2120 2.8754 -5.0424 22 1 7.0891 4.8967 -6.0543 23 1 8.4316 2.8774 -6.0198 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 4.0095 0.6532 -0.8891 29 1 4.0088 0.6535 0.8908 30 1 5.7013 4.6364 -0.8898 31 1 5.7000 4.6371 0.8902 32 1 7.7010 4.2029 2.1190 33 1 10.1577 4.0751 2.1262 34 1 11.3994 3.8236 0.0170 35 1 10.1945 3.7014 -2.1197 36 1 9.6801 5.1908 -4.4102 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776884102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -126.242843 kcal Electronic energy + Delta-G solvation = -20846.728023 eV Core-core repulsion = 17487.802286 eV Total energy + Delta-G solvation = -3358.925737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67958 -40.54145 -39.37277 -37.33249 -35.71293 -35.52825 -33.62095 -31.39185 -30.80463 -28.75513 -27.10967 -26.53618 -22.95390 -22.77412 -21.77296 -21.09778 -19.12466 -18.76698 -18.62685 -17.85839 -17.26053 -17.09835 -16.46067 -16.32471 -16.13583 -15.46620 -15.41152 -14.80269 -14.46230 -14.37400 -13.77817 -13.66232 -13.56478 -13.36267 -13.09648 -12.93774 -12.80379 -12.74855 -12.53073 -12.12307 -11.83599 -11.51317 -11.35315 -11.26292 -11.09603 -11.04702 -10.24928 -9.24853 -9.22923 -8.62350 -6.33528 0.87355 1.07418 1.29298 1.36103 1.39535 1.46788 1.49125 1.52059 2.19251 2.44959 2.76659 3.61394 3.72882 3.99815 4.03585 4.10589 4.35136 4.36663 4.46591 4.57162 4.61368 4.70281 4.77809 4.93872 4.99294 5.17427 5.27877 5.32961 5.36566 5.51674 5.74514 6.01354 6.13206 6.20396 6.36898 6.39027 6.70258 6.85303 6.95795 7.07161 7.08095 8.34126 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.005076 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.055407 B = 5515.267353 C = 6853.857022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.714 5.714 3 C 0.516 3.484 4 O -0.566 6.566 5 C 0.039 3.961 6 O -0.351 6.351 7 C 0.470 3.530 8 O -0.522 6.522 9 C -0.042 4.042 10 C -0.201 4.201 11 C -0.084 4.084 12 C -0.240 4.240 13 C -0.112 4.112 14 C -0.191 4.191 15 C 0.099 3.901 16 C -0.487 4.487 17 H 0.069 0.931 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.263 1.263 23 H -0.265 1.265 24 H 0.050 0.950 25 H 0.118 0.882 26 H 0.053 0.947 27 H 0.423 0.577 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 -9.394 4.548 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 C 0.301 3.699 4 O -0.445 6.445 5 C -0.038 4.038 6 O -0.268 6.268 7 C 0.314 3.686 8 O -0.410 6.410 9 C -0.079 4.079 10 C -0.203 4.203 11 C -0.102 4.102 12 C -0.259 4.259 13 C -0.130 4.130 14 C -0.210 4.210 15 C 0.097 3.903 16 C -0.516 4.516 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.448 5.448 20 Si 0.792 3.208 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.189 1.189 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.072 0.928 27 H 0.260 0.740 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.342 -8.840 4.399 15.806 hybrid contribution 0.348 -0.587 -0.903 1.132 sum -11.994 -9.427 3.495 15.651 Atomic orbital electron populations 1.21756 0.77611 1.04767 1.01725 1.45541 1.08770 1.07868 1.74687 1.20257 0.88964 0.84567 0.76077 1.90732 1.70664 1.32991 1.50067 1.22861 0.91756 0.82685 1.06528 1.86579 1.24948 1.30705 1.84551 1.24410 0.79286 0.93717 0.71149 1.90623 1.60740 1.43718 1.45900 1.20002 0.92505 0.89488 1.05948 1.19426 0.92707 1.14220 0.93917 1.20768 0.94421 0.98675 0.96343 1.20740 0.94196 1.13889 0.97098 1.20997 0.98668 1.00107 0.93238 1.21317 0.95050 1.07881 0.96786 1.17715 0.92317 0.87643 0.92613 1.19669 1.00235 1.39652 0.92047 0.91298 1.26631 0.94605 0.92024 1.04354 1.69869 1.17804 1.25774 1.31358 0.85334 0.79241 0.79239 0.77020 1.18750 1.18719 1.18937 0.93101 0.86313 0.92790 0.74007 0.87213 0.86198 0.87753 0.85834 0.86170 0.86347 0.87375 0.88273 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.70 127.77 1.37 2.41 16 2 N -0.71 -10.99 5.71 -484.53 -2.77 -13.76 16 3 C 0.52 13.24 7.91 87.66 0.69 13.94 16 4 O -0.57 -20.04 16.50 15.77 0.26 -19.78 16 5 C 0.04 1.02 5.94 71.24 0.42 1.45 16 6 O -0.35 -12.56 9.75 -45.02 -0.44 -13.00 16 7 C 0.47 18.86 7.57 71.24 0.54 19.40 16 8 O -0.52 -23.54 15.78 21.98 0.35 -23.20 16 9 C -0.04 -1.70 5.29 29.10 0.15 -1.55 16 10 C -0.20 -9.56 4.43 -19.41 -0.09 -9.65 16 11 C -0.08 -3.67 9.66 22.22 0.21 -3.45 16 12 C -0.24 -10.52 10.05 22.46 0.23 -10.29 16 13 C -0.11 -5.32 10.02 22.22 0.22 -5.10 16 14 C -0.19 -10.30 8.69 22.73 0.20 -10.10 16 15 C 0.10 5.37 5.56 -21.29 -0.12 5.25 16 16 C -0.49 -26.18 8.14 23.46 0.19 -25.99 16 17 H 0.07 3.64 6.67 -2.91 -0.02 3.62 16 18 C 0.04 1.98 5.16 85.25 0.44 2.42 16 19 N -0.82 -43.15 10.95 21.82 0.24 -42.91 16 20 Si 0.97 39.05 29.59 68.60 2.03 41.08 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.42 3.37 8.83 -92.71 -0.82 2.55 16 28 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 29 H 0.12 2.61 8.13 -2.39 -0.02 2.59 16 30 H 0.10 4.31 7.08 -2.38 -0.02 4.29 16 31 H 0.12 4.06 8.05 -2.39 -0.02 4.04 16 32 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 34 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 35 H 0.10 5.59 6.20 -2.91 -0.02 5.58 16 36 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 Total: -1.00 -72.62 318.75 4.43 -68.19 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.29 Total: 24.63 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 4.46 Total: -21.27 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -2.53 Total: -56.67 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: 0.17 Total: -55.97 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -72.62 4.43 -68.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776884102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.048 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds