Wall clock time and date at job start Mon Mar 30 2020 01:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46850 * 2 1 4 4 O 1.45196 * 109.47142 * 119.99978 * 2 1 3 5 5 C 1.34235 * 117.00319 * 269.99916 * 4 2 1 6 6 O 1.20824 * 119.99561 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00176 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46671 * 179.97438 * 7 5 4 9 9 C 1.37632 * 120.13067 * 264.99771 * 8 7 5 10 10 C 1.38616 * 120.25141 * 180.30341 * 9 8 7 11 11 C 1.38657 * 120.49769 * 359.44449 * 10 9 8 12 12 C 1.37599 * 120.24996 * 0.55619 * 11 10 9 13 13 C 1.40698 * 120.12520 * 85.02739 * 8 7 5 14 14 C 1.41401 * 120.24431 * 359.94844 * 13 8 7 15 15 H 1.07996 * 120.00140 * 329.79416 * 14 13 8 16 16 C 1.39943 * 119.99611 * 149.80024 * 14 13 8 17 17 N 1.30828 * 120.00177 * 162.08912 * 16 14 13 18 18 Si 1.86803 * 120.00186 * 342.08044 * 16 14 13 19 19 H 1.48499 * 109.47049 * 95.39710 * 18 16 14 20 20 H 1.48502 * 109.46957 * 215.39592 * 18 16 14 21 21 H 1.48500 * 109.46884 * 335.39299 * 18 16 14 22 22 C 1.50700 * 109.46993 * 240.00125 * 2 1 3 23 23 N 1.34776 * 120.00171 * 65.00060 * 22 2 1 24 24 O 1.21282 * 120.00014 * 244.99586 * 22 2 1 25 25 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46885 * 299.99896 * 1 2 3 27 27 H 1.08998 * 109.47116 * 60.00135 * 1 2 3 28 28 H 1.08999 * 109.47141 * 60.00043 * 7 5 4 29 29 H 1.08995 * 109.46651 * 299.99989 * 7 5 4 30 30 H 1.08001 * 119.87446 * 0.02562 * 9 8 7 31 31 H 1.07997 * 119.74655 * 179.70453 * 10 9 8 32 32 H 1.07999 * 119.87349 * 180.30786 * 11 10 9 33 33 H 1.07999 * 120.12771 * 179.75037 * 12 11 10 34 34 H 0.96989 * 120.00516 * 179.97438 * 17 16 14 35 35 H 0.97001 * 120.00006 * 0.02562 * 23 22 2 36 36 H 0.96997 * 119.99733 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0640 2.2812 6 8 1.9983 1.2519 2.2503 7 6 2.7194 -0.5771 3.5492 8 6 2.8623 0.4732 4.6204 9 6 4.0789 1.0799 4.8352 10 6 4.2146 2.0417 5.8241 11 6 3.1266 2.4121 6.5997 12 6 1.9008 1.8189 6.4025 13 6 1.7526 0.8369 5.4053 14 6 0.4977 0.2208 5.1933 15 1 0.2268 -0.1277 4.2076 16 6 -0.3933 0.0627 6.2608 17 7 -1.6589 -0.1726 6.0272 18 14 0.2244 0.1873 8.0193 19 1 0.0130 1.5687 8.5215 20 1 -0.5217 -0.7700 8.8750 21 1 1.6728 -0.1379 8.0594 22 6 2.0323 -0.7104 -1.2305 23 7 1.7919 -0.1941 -2.4520 24 8 2.6530 -1.7466 -1.1216 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.6885 -1.0400 3.3631 29 1 2.0105 -1.3372 3.8773 30 1 4.9320 0.8023 4.2341 31 1 5.1742 2.5091 5.9889 32 1 3.2426 3.1662 7.3640 33 1 1.0556 2.1060 7.0104 34 1 -2.2764 -0.2825 6.7670 35 1 1.2958 0.6349 -2.5392 36 1 2.1155 -0.6512 -3.2440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777164308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:54 Heat of formation + Delta-G solvation = -113.435135 kcal Electronic energy + Delta-G solvation = -21309.309415 eV Core-core repulsion = 17950.939063 eV Total energy + Delta-G solvation = -3358.370353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42198 -39.17600 -37.86262 -35.88890 -34.04435 -33.62471 -32.15422 -31.23765 -30.35899 -27.29818 -25.14233 -24.62582 -21.79214 -21.27588 -20.27058 -19.45888 -17.95413 -17.44135 -17.34913 -16.48292 -15.93205 -15.64336 -15.31144 -14.85362 -14.45812 -14.06352 -13.82059 -13.72794 -13.15193 -12.70989 -12.66182 -12.29096 -12.17911 -11.94816 -11.63076 -11.39788 -11.22013 -10.84475 -10.77818 -10.53452 -10.27539 -9.93670 -9.90611 -9.78751 -9.73959 -9.59675 -9.15168 -7.65225 -7.56144 -6.96789 -4.52401 2.37605 2.45428 2.67727 2.80516 2.89270 3.11217 3.21185 3.31751 3.67230 3.97230 4.49309 4.63397 4.87590 4.98199 5.20218 5.43763 5.62890 5.69917 5.83253 5.91262 6.06490 6.12939 6.15971 6.29203 6.51406 6.55990 6.68953 6.83045 6.92019 7.07469 7.16818 7.40001 7.62169 7.71085 7.86010 8.06268 8.10109 8.30491 8.38878 8.63322 8.78180 10.05172 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.005304 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.743028 B = 5277.710899 C = 6128.774916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.337 6.337 5 C 0.462 3.538 6 O -0.492 6.492 7 C -0.044 4.044 8 C -0.181 4.181 9 C -0.064 4.064 10 C -0.243 4.243 11 C -0.077 4.077 12 C -0.232 4.232 13 C 0.111 3.889 14 C -0.445 4.445 15 H 0.089 0.911 16 C 0.086 3.914 17 N -0.806 5.806 18 Si 0.910 3.090 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.243 1.243 22 C 0.523 3.477 23 N -0.852 5.852 24 O -0.521 6.521 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.285 0.715 35 H 0.403 0.597 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 0.649 -10.264 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 H 0.126 0.874 4 O -0.255 6.255 5 C 0.305 3.695 6 O -0.377 6.377 7 C -0.081 4.081 8 C -0.182 4.182 9 C -0.082 4.082 10 C -0.262 4.262 11 C -0.095 4.095 12 C -0.251 4.251 13 C 0.108 3.892 14 C -0.473 4.473 15 H 0.106 0.894 16 C -0.133 4.133 17 N -0.430 5.430 18 Si 0.737 3.263 19 H -0.197 1.197 20 H -0.219 1.219 21 H -0.166 1.166 22 C 0.306 3.694 23 N -0.418 5.418 24 O -0.395 6.395 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.302 0.273 -9.974 10.510 hybrid contribution -0.205 0.578 0.264 0.667 sum 3.097 0.850 -9.710 10.227 Atomic orbital electron populations 1.22148 0.91848 1.04057 1.04204 1.22277 0.96106 0.97573 0.83289 0.87439 1.86696 1.77540 1.41924 1.19309 1.24507 0.74052 0.86392 0.84551 1.90633 1.47043 1.16723 1.83343 1.20008 1.02382 0.98698 0.87004 1.19061 0.93857 1.02942 1.02347 1.20471 0.95702 0.95548 0.96480 1.20340 0.97699 1.05264 1.02898 1.20628 0.93364 0.97868 0.97625 1.21007 0.96886 1.02387 1.04846 1.17487 0.91995 0.89767 0.89997 1.19425 0.96825 1.33547 0.97541 0.89352 1.26158 0.93763 0.91213 1.02212 1.69692 1.03260 1.34582 1.35488 0.86328 0.81345 0.78042 0.80602 1.19710 1.21850 1.16594 1.20312 0.79089 0.85137 0.84813 1.43705 1.60831 1.29575 1.07737 1.90774 1.39151 1.23014 1.86548 0.90895 0.89825 0.90698 0.88841 0.86842 0.88843 0.88851 0.88882 0.88192 0.90450 0.76889 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.50 37.16 0.35 -1.75 16 2 C 0.07 0.98 2.97 -27.88 -0.08 0.89 16 3 H 0.11 1.51 7.16 -51.93 -0.37 1.14 16 4 O -0.34 -6.25 9.42 -45.90 -0.43 -6.68 16 5 C 0.46 9.41 7.54 36.01 0.27 9.68 16 6 O -0.49 -11.15 15.25 -18.75 -0.29 -11.44 16 7 C -0.04 -0.87 5.30 -29.03 -0.15 -1.02 16 8 C -0.18 -4.12 4.43 -103.92 -0.46 -4.58 16 9 C -0.06 -1.35 9.66 -39.66 -0.38 -1.74 16 10 C -0.24 -5.11 10.05 -39.29 -0.39 -5.51 16 11 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 12 C -0.23 -5.66 7.17 -38.87 -0.28 -5.94 16 13 C 0.11 2.78 5.10 -106.82 -0.54 2.24 16 14 C -0.45 -11.76 8.56 -37.74 -0.32 -12.08 16 15 H 0.09 2.45 7.00 -52.49 -0.37 2.08 16 16 C 0.09 2.21 5.41 -17.34 -0.09 2.12 16 17 N -0.81 -21.16 13.93 55.55 0.77 -20.38 16 18 Si 0.91 20.56 24.52 -169.99 -4.17 16.39 16 19 H -0.27 -6.00 6.71 56.52 0.38 -5.62 16 20 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.24 -5.59 6.86 56.52 0.39 -5.21 16 22 C 0.52 7.06 7.45 -10.99 -0.08 6.98 16 23 N -0.85 -6.80 8.84 31.22 0.28 -6.52 16 24 O -0.52 -9.32 17.35 -14.05 -0.24 -9.57 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 28 H 0.09 1.57 8.05 -51.93 -0.42 1.15 16 29 H 0.11 2.27 7.14 -51.93 -0.37 1.89 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.10 2.42 4.77 -52.49 -0.25 2.17 16 34 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 35 H 0.40 2.00 8.61 -40.82 -0.35 1.65 16 36 H 0.40 2.61 8.93 -40.82 -0.36 2.24 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -32.58 311.48 -6.15 -38.73 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.19 Total: 7.57 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.57 Total: -12.79 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 1.05 Total: -26.91 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.96 Total: -27.69 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.17 Total: 16.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.58 -6.15 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.704 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds