Wall clock time and date at job start Mon Mar 30 2020 01:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46850 * 2 1 4 4 O 1.45196 * 109.47142 * 119.99978 * 2 1 3 5 5 C 1.34235 * 117.00319 * 269.99916 * 4 2 1 6 6 O 1.20824 * 119.99561 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00176 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46671 * 179.97438 * 7 5 4 9 9 C 1.37632 * 120.13067 * 264.99771 * 8 7 5 10 10 C 1.38616 * 120.25141 * 180.30341 * 9 8 7 11 11 C 1.38657 * 120.49769 * 359.44449 * 10 9 8 12 12 C 1.37599 * 120.24996 * 0.55619 * 11 10 9 13 13 C 1.40698 * 120.12520 * 85.02739 * 8 7 5 14 14 C 1.41401 * 120.24431 * 359.94844 * 13 8 7 15 15 H 1.07996 * 120.00140 * 329.79416 * 14 13 8 16 16 C 1.39943 * 119.99611 * 149.80024 * 14 13 8 17 17 N 1.30828 * 120.00177 * 162.08912 * 16 14 13 18 18 Si 1.86803 * 120.00186 * 342.08044 * 16 14 13 19 19 H 1.48499 * 109.47049 * 95.39710 * 18 16 14 20 20 H 1.48502 * 109.46957 * 215.39592 * 18 16 14 21 21 H 1.48500 * 109.46884 * 335.39299 * 18 16 14 22 22 C 1.50700 * 109.46993 * 240.00125 * 2 1 3 23 23 N 1.34776 * 120.00171 * 65.00060 * 22 2 1 24 24 O 1.21282 * 120.00014 * 244.99586 * 22 2 1 25 25 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46885 * 299.99896 * 1 2 3 27 27 H 1.08998 * 109.47116 * 60.00135 * 1 2 3 28 28 H 1.08999 * 109.47141 * 60.00043 * 7 5 4 29 29 H 1.08995 * 109.46651 * 299.99989 * 7 5 4 30 30 H 1.08001 * 119.87446 * 0.02562 * 9 8 7 31 31 H 1.07997 * 119.74655 * 179.70453 * 10 9 8 32 32 H 1.07999 * 119.87349 * 180.30786 * 11 10 9 33 33 H 1.07999 * 120.12771 * 179.75037 * 12 11 10 34 34 H 0.96989 * 120.00516 * 179.97438 * 17 16 14 35 35 H 0.97001 * 120.00006 * 0.02562 * 23 22 2 36 36 H 0.96997 * 119.99733 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2172 0.0640 2.2812 6 8 1.9983 1.2519 2.2503 7 6 2.7194 -0.5771 3.5492 8 6 2.8623 0.4732 4.6204 9 6 4.0789 1.0799 4.8352 10 6 4.2146 2.0417 5.8241 11 6 3.1266 2.4121 6.5997 12 6 1.9008 1.8189 6.4025 13 6 1.7526 0.8369 5.4053 14 6 0.4977 0.2208 5.1933 15 1 0.2268 -0.1277 4.2076 16 6 -0.3933 0.0627 6.2608 17 7 -1.6589 -0.1726 6.0272 18 14 0.2244 0.1873 8.0193 19 1 0.0130 1.5687 8.5215 20 1 -0.5217 -0.7700 8.8750 21 1 1.6728 -0.1379 8.0594 22 6 2.0323 -0.7104 -1.2305 23 7 1.7919 -0.1941 -2.4520 24 8 2.6530 -1.7466 -1.1216 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.6885 -1.0400 3.3631 29 1 2.0105 -1.3372 3.8773 30 1 4.9320 0.8023 4.2341 31 1 5.1742 2.5091 5.9889 32 1 3.2426 3.1662 7.3640 33 1 1.0556 2.1060 7.0104 34 1 -2.2764 -0.2825 6.7670 35 1 1.2958 0.6349 -2.5392 36 1 2.1155 -0.6512 -3.2440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777164308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:54 Heat of formation + Delta-G solvation = -136.001323 kcal Electronic energy + Delta-G solvation = -21310.287959 eV Core-core repulsion = 17950.939063 eV Total energy + Delta-G solvation = -3359.348896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84927 -40.47184 -39.54691 -37.41796 -35.50064 -35.06743 -33.75779 -32.46138 -32.16469 -28.95417 -26.85808 -25.90489 -23.39138 -22.93039 -21.49926 -21.09917 -19.27353 -19.06184 -18.78081 -17.63790 -17.58523 -17.14572 -16.69192 -16.27557 -16.08858 -15.67947 -15.45846 -15.05653 -14.62094 -14.33924 -14.05103 -13.85428 -13.75337 -13.45736 -13.17238 -12.91669 -12.71421 -12.68542 -12.52778 -12.00848 -11.92675 -11.55272 -11.50643 -11.41564 -11.03054 -10.97534 -10.79993 -9.41802 -9.35566 -8.87421 -6.47414 0.70215 0.89184 1.25661 1.28622 1.37929 1.39146 1.50851 1.54940 2.14232 2.52765 2.65762 3.51069 3.68751 3.74688 3.86502 3.95191 4.20140 4.23252 4.45391 4.52060 4.57560 4.60283 4.70089 4.89989 4.93126 5.03000 5.14405 5.32123 5.35679 5.65231 5.78975 5.85232 5.92636 6.03452 6.25621 6.27135 6.43797 6.76582 6.82173 6.88221 7.17693 8.20354 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.005304 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.743028 B = 5277.710899 C = 6128.774916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.056 3.944 3 H 0.115 0.885 4 O -0.348 6.348 5 C 0.468 3.532 6 O -0.522 6.522 7 C -0.047 4.047 8 C -0.186 4.186 9 C -0.072 4.072 10 C -0.229 4.229 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.087 3.913 14 C -0.472 4.472 15 H 0.057 0.943 16 C 0.050 3.950 17 N -0.849 5.849 18 Si 0.962 3.038 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.250 1.250 22 C 0.529 3.471 23 N -0.819 5.819 24 O -0.571 6.571 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.292 0.708 35 H 0.421 0.579 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 1.638 -10.845 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.002 4.002 3 H 0.133 0.867 4 O -0.264 6.264 5 C 0.312 3.688 6 O -0.410 6.410 7 C -0.084 4.084 8 C -0.187 4.187 9 C -0.090 4.090 10 C -0.248 4.248 11 C -0.103 4.103 12 C -0.273 4.273 13 C 0.085 3.915 14 C -0.502 4.502 15 H 0.075 0.925 16 C -0.165 4.165 17 N -0.475 5.475 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.174 1.174 22 C 0.312 3.688 23 N -0.386 5.386 24 O -0.449 6.449 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.281 1.289 -10.610 11.921 hybrid contribution -0.671 0.364 0.268 0.809 sum 4.609 1.652 -10.341 11.442 Atomic orbital electron populations 1.22154 0.90579 1.04030 1.04988 1.22672 0.97220 0.97856 0.82456 0.86690 1.86647 1.77398 1.42294 1.20110 1.24420 0.73362 0.85901 0.85088 1.90604 1.48513 1.17898 1.84002 1.20063 1.04000 0.97921 0.86453 1.19425 0.93977 1.03150 1.02184 1.20916 0.96047 0.95205 0.96853 1.20879 0.98862 1.03864 1.01170 1.21024 0.92637 0.98146 0.98481 1.21152 0.98047 1.02925 1.05147 1.17703 0.92218 0.90318 0.91310 1.19350 0.98425 1.35743 0.96649 0.92512 1.26778 0.93734 0.90867 1.05095 1.69725 1.04124 1.36982 1.36665 0.85529 0.80313 0.78474 0.77039 1.18977 1.20576 1.17356 1.20085 0.78650 0.84397 0.85673 1.43412 1.59246 1.29721 1.06255 1.90761 1.41735 1.25131 1.87259 0.91322 0.92818 0.86070 0.85372 0.87759 0.85464 0.85150 0.85769 0.88838 0.89752 0.74676 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.50 71.98 0.68 -3.34 16 2 C 0.06 1.62 2.97 29.85 0.09 1.71 16 3 H 0.12 3.13 7.16 -2.39 -0.02 3.12 16 4 O -0.35 -13.06 9.42 -45.12 -0.43 -13.48 16 5 C 0.47 19.33 7.54 71.24 0.54 19.87 16 6 O -0.52 -24.05 15.25 21.97 0.34 -23.72 16 7 C -0.05 -1.88 5.30 29.10 0.15 -1.73 16 8 C -0.19 -8.36 4.43 -19.41 -0.09 -8.45 16 9 C -0.07 -2.85 9.66 22.22 0.21 -2.64 16 10 C -0.23 -8.74 10.05 22.46 0.23 -8.51 16 11 C -0.08 -3.50 10.02 22.22 0.22 -3.28 16 12 C -0.25 -12.21 7.17 22.73 0.16 -12.05 16 13 C 0.09 4.44 5.10 -21.29 -0.11 4.33 16 14 C -0.47 -26.15 8.56 23.46 0.20 -25.95 16 15 H 0.06 3.38 7.00 -2.91 -0.02 3.36 16 16 C 0.05 2.67 5.41 85.26 0.46 3.13 16 17 N -0.85 -46.54 13.93 21.83 0.30 -46.23 16 18 Si 0.96 43.01 24.52 68.60 1.68 44.70 16 19 H -0.26 -11.35 6.71 99.48 0.67 -10.68 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.25 -11.31 6.86 99.48 0.68 -10.62 16 22 C 0.53 13.57 7.45 87.66 0.65 14.22 16 23 N -0.82 -10.83 8.84 -173.53 -1.53 -12.37 16 24 O -0.57 -20.16 17.35 15.71 0.27 -19.89 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.12 1.83 7.93 -2.39 -0.02 1.81 16 28 H 0.13 4.10 8.05 -2.39 -0.02 4.08 16 29 H 0.10 4.35 7.14 -2.39 -0.02 4.33 16 30 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 32 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.09 4.53 4.77 -2.91 -0.01 4.52 16 34 H 0.29 14.45 8.30 -92.72 -0.77 13.68 16 35 H 0.42 2.71 8.61 -92.71 -0.80 1.91 16 36 H 0.42 4.17 8.93 -92.71 -0.83 3.34 16 Total: -1.00 -73.53 311.48 3.49 -70.04 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.55 Total: 23.63 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.41 Total: -22.68 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -1.23 Total: -58.60 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: 0.18 Total: -57.08 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.68 Total: 44.70 kcal Total: -73.53 3.49 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.964 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds