Wall clock time and date at job start Mon Mar 30 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47319 * 2 1 4 4 O 1.45204 * 109.47075 * 240.00200 * 2 1 3 5 5 C 1.34234 * 117.00094 * 89.99701 * 4 2 1 6 6 O 1.20823 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00243 * 180.02562 * 5 4 2 8 8 C 1.50700 * 109.47466 * 180.02562 * 7 5 4 9 9 C 1.37638 * 120.12553 * 265.00069 * 8 7 5 10 10 C 1.38619 * 120.24914 * 179.97438 * 9 8 7 11 11 C 1.38655 * 120.49787 * 0.02610 * 10 9 8 12 12 C 1.37601 * 120.25167 * 0.02562 * 11 10 9 13 13 C 1.40695 * 120.13018 * 84.72539 * 8 7 5 14 14 C 1.41399 * 120.23964 * 359.97438 * 13 8 7 15 15 H 1.07994 * 120.00355 * 333.90041 * 14 13 8 16 16 C 1.39952 * 119.99575 * 153.90219 * 14 13 8 17 17 N 1.30822 * 119.99933 * 343.70644 * 16 14 13 18 18 Si 1.86799 * 119.99788 * 163.70822 * 16 14 13 19 19 H 1.48500 * 109.47070 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47137 * 119.99842 * 18 16 14 21 21 H 1.48497 * 109.47167 * 239.99952 * 18 16 14 22 22 C 1.50696 * 109.47440 * 120.00394 * 2 1 3 23 23 N 1.34779 * 119.99938 * 299.99829 * 22 2 1 24 24 O 1.21282 * 120.00259 * 119.99366 * 22 2 1 25 25 H 1.09002 * 109.47392 * 300.00190 * 1 2 3 26 26 H 1.09000 * 109.47487 * 59.99847 * 1 2 3 27 27 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47131 * 300.00510 * 7 5 4 29 29 H 1.09006 * 109.46979 * 59.99937 * 7 5 4 30 30 H 1.08003 * 119.87679 * 0.02562 * 9 8 7 31 31 H 1.07990 * 119.74888 * 179.97438 * 10 9 8 32 32 H 1.07999 * 119.87431 * 179.97438 * 11 10 9 33 33 H 1.07994 * 120.13019 * 179.97438 * 12 11 10 34 34 H 0.97003 * 119.99516 * 180.02562 * 17 16 14 35 35 H 0.97004 * 119.99707 * 0.02562 * 23 22 2 36 36 H 0.96995 * 120.00078 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2170 0.0641 -2.2812 6 8 1.9981 1.2519 -2.2504 7 6 2.7181 -0.5771 -3.5496 8 6 2.8612 0.4732 -4.6208 9 6 1.8416 0.6854 -5.5207 10 6 1.9702 1.6512 -6.5068 11 6 3.1250 2.4131 -6.5991 12 6 4.1575 2.2174 -5.7108 13 6 4.0351 1.2445 -4.7014 14 6 5.0865 1.0396 -3.7784 15 1 4.8745 0.6371 -2.7989 16 6 6.4020 1.3584 -4.1342 17 7 6.7142 1.5378 -5.3919 18 14 7.7118 1.5277 -2.8133 19 1 7.1061 1.2782 -1.4806 20 1 8.7932 0.5399 -3.0589 21 1 8.2775 2.9003 -2.8501 22 6 2.0323 -0.7105 1.2304 23 7 1.7068 -0.2501 2.4545 24 8 2.7295 -1.6966 1.1190 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.6870 -1.0408 -3.3641 29 1 2.0085 -1.3368 -3.8775 30 1 0.9375 0.0979 -5.4578 31 1 1.1654 1.8106 -7.2089 32 1 3.2147 3.1625 -7.3716 33 1 5.0562 2.8117 -5.7848 34 1 7.6260 1.7585 -5.6385 35 1 1.1488 0.5384 2.5435 36 1 2.0299 -0.7075 3.2464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777164312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:56 Heat of formation + Delta-G solvation = -135.905829 kcal Electronic energy + Delta-G solvation = -21293.197486 eV Core-core repulsion = 17933.852730 eV Total energy + Delta-G solvation = -3359.344755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81406 -40.43086 -39.36252 -37.37414 -35.54177 -35.08862 -33.67274 -32.36817 -31.38128 -28.83968 -27.01189 -25.89069 -23.12743 -22.82741 -21.48104 -21.07562 -19.13542 -19.04472 -18.73255 -17.66488 -17.29551 -17.12068 -16.65355 -16.22351 -16.07082 -15.47313 -15.38317 -14.97669 -14.42175 -14.30369 -14.00763 -13.59504 -13.44078 -13.37420 -12.96092 -12.88151 -12.77026 -12.65182 -12.53114 -12.14814 -11.90513 -11.46795 -11.36052 -11.25960 -11.06451 -11.00746 -10.79502 -9.25387 -9.23298 -8.64216 -6.34942 0.87668 1.06707 1.28545 1.33195 1.40408 1.45898 1.49182 1.60405 2.17232 2.55352 2.74861 3.66351 3.73749 3.77410 3.93156 4.03123 4.28685 4.34179 4.56702 4.64502 4.65286 4.71143 4.76696 4.99426 5.06490 5.16144 5.33314 5.37104 5.50881 5.73630 5.79353 6.00587 6.12418 6.19874 6.27348 6.38241 6.69551 6.86037 6.94593 7.06159 7.19087 8.32202 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.006261 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.157201 B = 4471.342524 C = 5942.349440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.052 3.948 3 H 0.107 0.893 4 O -0.347 6.347 5 C 0.469 3.531 6 O -0.521 6.521 7 C -0.043 4.043 8 C -0.201 4.201 9 C -0.083 4.083 10 C -0.238 4.238 11 C -0.112 4.112 12 C -0.190 4.190 13 C 0.098 3.902 14 C -0.487 4.487 15 H 0.065 0.935 16 C 0.040 3.960 17 N -0.821 5.821 18 Si 0.967 3.033 19 H -0.268 1.268 20 H -0.261 1.261 21 H -0.262 1.262 22 C 0.524 3.476 23 N -0.820 5.820 24 O -0.574 6.574 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.288 0.712 35 H 0.421 0.579 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -1.602 11.959 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.006 4.006 3 H 0.125 0.875 4 O -0.264 6.264 5 C 0.313 3.687 6 O -0.409 6.409 7 C -0.080 4.080 8 C -0.202 4.202 9 C -0.101 4.101 10 C -0.257 4.257 11 C -0.130 4.130 12 C -0.209 4.209 13 C 0.096 3.904 14 C -0.516 4.516 15 H 0.083 0.917 16 C -0.175 4.175 17 N -0.447 5.447 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.185 1.185 21 H -0.187 1.187 22 C 0.307 3.693 23 N -0.387 5.387 24 O -0.452 6.452 25 H 0.136 0.864 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.553 -1.796 11.586 15.124 hybrid contribution 0.819 0.590 0.655 1.203 sum -8.734 -1.206 12.241 15.085 Atomic orbital electron populations 1.22166 0.89132 1.04501 1.05479 1.22724 0.98140 0.97465 0.82293 0.87500 1.86649 1.77595 1.42159 1.19997 1.24408 0.73140 0.85938 0.85197 1.90602 1.48457 1.17577 1.84241 1.20002 1.03458 0.97647 0.86885 1.19430 0.97919 1.02201 1.00692 1.20759 0.96909 0.97552 0.94835 1.20750 0.99030 1.02652 1.03314 1.20999 0.94264 0.99324 0.98407 1.21299 0.98874 1.01065 0.99684 1.17711 0.91892 0.89118 0.91649 1.19636 0.92081 1.39568 1.00352 0.91720 1.26590 1.01539 0.91730 0.97665 1.69864 1.21631 1.34647 1.18532 0.85388 0.77740 0.79274 0.78772 1.19232 1.18545 1.18670 1.20252 0.79349 0.83766 0.85928 1.43426 1.55159 1.34057 1.06071 1.90773 1.39065 1.28017 1.87377 0.86398 0.91485 0.90568 0.88151 0.85634 0.86022 0.86219 0.87323 0.88331 0.90164 0.74630 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.44 71.98 0.68 -2.24 16 2 C 0.05 1.43 2.98 29.84 0.09 1.52 16 3 H 0.11 3.02 7.16 -2.39 -0.02 3.00 16 4 O -0.35 -12.62 9.42 -45.10 -0.42 -13.05 16 5 C 0.47 19.13 7.54 71.23 0.54 19.67 16 6 O -0.52 -23.74 15.25 21.97 0.34 -23.41 16 7 C -0.04 -1.74 5.29 29.10 0.15 -1.59 16 8 C -0.20 -9.61 4.43 -19.41 -0.09 -9.70 16 9 C -0.08 -3.58 9.66 22.22 0.21 -3.37 16 10 C -0.24 -10.38 10.05 22.46 0.23 -10.15 16 11 C -0.11 -5.31 10.02 22.22 0.22 -5.09 16 12 C -0.19 -10.29 8.69 22.73 0.20 -10.09 16 13 C 0.10 5.38 5.56 -21.29 -0.12 5.26 16 14 C -0.49 -26.78 8.14 23.46 0.19 -26.59 16 15 H 0.06 3.55 6.67 -2.91 -0.02 3.53 16 16 C 0.04 2.07 5.16 85.26 0.44 2.51 16 17 N -0.82 -43.61 10.96 21.83 0.24 -43.37 16 18 Si 0.97 40.23 29.59 68.60 2.03 42.26 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 C 0.52 13.68 7.51 87.66 0.66 14.34 16 23 N -0.82 -11.10 8.77 -173.53 -1.52 -12.62 16 24 O -0.57 -21.12 17.34 15.76 0.27 -20.84 16 25 H 0.12 1.17 7.56 -2.39 -0.02 1.15 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 4.28 7.08 -2.39 -0.02 4.26 16 29 H 0.13 4.11 8.05 -2.38 -0.02 4.09 16 30 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.12 4.37 8.06 -2.92 -0.02 4.35 16 32 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.10 5.60 6.20 -2.91 -0.02 5.58 16 34 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 35 H 0.42 2.57 8.25 -92.71 -0.76 1.81 16 36 H 0.42 4.47 8.93 -92.71 -0.83 3.64 16 Total: -1.00 -74.22 315.77 3.88 -70.34 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.46 Total: 26.19 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 3.41 Total: -25.51 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -1.28 Total: -55.99 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: 0.18 Total: -57.30 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -74.22 3.88 -70.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.563 kcal (2) G-P(sol) polarization free energy of solvation -74.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds