Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00302 * 2 1 4 4 C 1.50700 * 109.47237 * 269.99972 * 3 2 1 5 5 H 1.08001 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00182 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99961 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00236 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47084 * 59.99995 * 8 6 4 10 10 H 1.48498 * 109.47456 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47103 * 300.00314 * 8 6 4 12 12 C 1.34782 * 120.00088 * 179.97438 * 2 1 3 13 13 O 1.21715 * 120.00027 * 180.02562 * 12 2 1 14 14 C 1.46253 * 119.99627 * 359.97438 * 12 2 1 15 15 C 1.34983 * 120.00079 * 173.69849 * 14 12 2 16 16 C 1.47008 * 119.99819 * 346.30305 * 15 14 12 17 17 C 1.39953 * 120.09366 * 317.01217 * 16 15 14 18 18 C 1.37745 * 119.97458 * 179.74500 * 17 16 15 19 19 C 1.38860 * 120.17394 * 0.55468 * 18 17 16 20 20 O 1.35830 * 119.90442 * 179.72180 * 19 18 17 21 21 C 1.39438 * 120.19139 * 359.69946 * 19 18 17 22 22 O 1.35995 * 119.98698 * 180.02562 * 21 19 18 23 23 C 1.38094 * 120.01985 * 0.02562 * 21 19 18 24 24 H 1.08993 * 109.47617 * 270.00293 * 1 2 3 25 25 H 1.09000 * 109.46561 * 30.00571 * 1 2 3 26 26 H 1.08996 * 109.46985 * 149.99522 * 1 2 3 27 27 H 1.09003 * 109.47273 * 30.00099 * 3 2 1 28 28 H 1.08999 * 109.47477 * 149.99504 * 3 2 1 29 29 H 0.96999 * 120.00114 * 179.97438 * 7 6 4 30 30 H 1.08003 * 120.00319 * 353.42244 * 14 12 2 31 31 H 1.07996 * 120.00403 * 166.29750 * 15 14 12 32 32 H 1.07997 * 120.01124 * 0.02562 * 17 16 15 33 33 H 1.08006 * 119.91304 * 180.25344 * 18 17 16 34 34 H 0.96707 * 113.99718 * 269.98343 * 20 19 18 35 35 H 0.96707 * 113.99475 * 269.97501 * 22 21 19 36 36 H 1.07997 * 120.08250 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6731 8 14 3.4381 3.4167 -3.4339 9 1 2.1409 3.5935 -4.1346 10 1 4.1806 4.7028 -3.4339 11 1 4.2415 2.3819 -4.1332 12 6 2.1389 -1.1672 0.0005 13 8 3.3561 -1.1672 0.0010 14 6 1.4076 -2.4338 0.0017 15 6 2.0763 -3.5994 -0.1261 16 6 3.4796 -3.5975 -0.5641 17 6 3.8856 -2.7673 -1.6151 18 6 5.2022 -2.7636 -2.0200 19 6 6.1268 -3.5904 -1.3955 20 8 7.4225 -3.5865 -1.8030 21 6 5.7289 -4.4242 -0.3512 22 8 6.6380 -5.2319 0.2577 23 6 4.4122 -4.4302 0.0649 24 1 -0.3634 0.0001 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1499 1.1383 0.5139 29 1 4.0295 4.4444 -0.8503 30 1 0.3329 -2.4368 0.1092 31 1 1.5804 -4.5333 0.0934 32 1 3.1678 -2.1265 -2.1055 33 1 5.5153 -2.1195 -2.8284 34 1 7.6170 -4.2262 -2.5016 35 1 6.7200 -6.1066 -0.1465 36 1 4.1029 -5.0759 0.8734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779481573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = -59.819662 kcal Electronic energy + Delta-G solvation = -21256.284994 eV Core-core repulsion = 17900.239583 eV Total energy + Delta-G solvation = -3356.045411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04671 -38.99822 -36.80771 -36.60319 -34.71715 -33.03738 -32.47319 -30.04646 -28.61826 -27.59242 -25.81395 -24.03925 -22.55077 -22.41044 -20.61800 -18.74322 -18.17116 -17.22539 -16.75300 -16.50252 -15.91693 -15.62019 -15.09800 -14.69186 -14.39685 -14.21684 -13.86494 -13.47051 -13.17621 -12.65170 -12.41549 -12.19176 -12.11255 -11.97707 -11.75229 -11.58290 -11.21487 -11.05493 -10.89741 -10.54978 -10.15576 -10.01706 -9.67424 -9.47785 -9.01449 -8.54268 -8.42705 -7.68621 -7.57187 -6.03400 -4.08592 0.87808 1.56711 1.98790 3.31161 3.36347 3.38148 3.87365 3.99036 4.05498 4.21256 4.28207 4.45454 4.91160 5.03385 5.21437 5.31156 5.45006 5.48951 5.68848 5.70006 5.93099 5.97938 6.04355 6.13938 6.24078 6.33094 6.51870 6.59248 6.80952 6.94677 7.10878 7.46608 7.50499 7.54946 7.92507 7.93587 8.23689 8.43359 8.90456 9.11692 9.56349 11.04617 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.005737 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.752494 B = 4879.024652 C = 6091.898189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.596 5.596 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.527 6.527 14 C -0.193 4.193 15 C -0.050 4.050 16 C -0.052 4.052 17 C -0.023 4.023 18 C -0.136 4.136 19 C 0.086 3.914 20 O -0.489 6.489 21 C 0.060 3.940 22 O -0.489 6.489 23 C -0.116 4.116 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.380 0.620 35 H 0.377 0.623 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -18.116 -1.838 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.327 5.327 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.406 6.406 14 C -0.214 4.214 15 C -0.069 4.069 16 C -0.052 4.052 17 C -0.042 4.042 18 C -0.154 4.154 19 C 0.041 3.959 20 O -0.297 6.297 21 C 0.015 3.985 22 O -0.297 6.297 23 C -0.134 4.134 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.235 0.765 35 H 0.231 0.769 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.747 -16.936 -0.982 17.185 hybrid contribution -0.051 -0.175 -1.483 1.494 sum -2.798 -17.110 -2.464 17.512 Atomic orbital electron populations 1.21670 0.81567 1.02525 1.00417 1.48148 1.06131 1.07963 1.70469 1.19285 0.92591 0.78031 0.97505 1.21351 1.36681 1.06248 0.92140 0.92592 1.24932 0.95365 0.96405 0.97345 1.69923 1.38239 1.14336 1.30783 0.86577 0.78313 0.77901 0.84730 1.20272 1.21156 1.20194 1.18275 0.87768 0.84157 0.78726 1.90876 1.13117 1.86822 1.49751 1.23407 1.00144 0.93364 1.04495 1.22200 0.92543 0.97509 0.94686 1.18735 0.93194 0.96910 0.96371 1.21080 0.95624 0.93009 0.94447 1.21171 0.92694 0.99929 1.01655 1.18894 0.83843 0.98195 0.95002 1.84906 1.23392 1.62776 1.58670 1.18485 0.88327 0.95876 0.95807 1.84970 1.59987 1.27995 1.56747 1.21255 0.91530 1.00524 1.00141 0.93772 0.90779 0.92309 0.95128 0.93755 0.92643 0.85121 0.85015 0.85695 0.85164 0.76547 0.76880 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.10 59.85 0.60 1.89 16 2 N -0.60 -12.64 2.86 -184.68 -0.53 -13.17 16 3 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 4 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 10.78 6.63 -13.04 -0.09 10.70 16 13 O -0.53 -12.96 11.96 5.17 0.06 -12.89 16 14 C -0.19 -2.87 8.99 -37.52 -0.34 -3.21 16 15 C -0.05 -0.66 9.80 -37.19 -0.36 -1.02 16 16 C -0.05 -0.82 4.49 -105.06 -0.47 -1.29 16 17 C -0.02 -0.41 6.69 -39.12 -0.26 -0.67 16 18 C -0.14 -2.35 9.96 -39.53 -0.39 -2.74 16 19 C 0.09 1.40 6.72 -38.90 -0.26 1.13 16 20 O -0.49 -7.19 13.27 -33.88 -0.45 -7.64 16 21 C 0.06 0.92 6.71 -39.19 -0.26 0.66 16 22 O -0.49 -6.58 13.28 -34.40 -0.46 -7.03 16 23 C -0.12 -1.71 9.72 -38.99 -0.38 -2.09 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.13 1.48 6.33 -52.48 -0.33 1.15 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 2.33 7.09 -52.49 -0.37 1.96 16 33 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.38 3.24 9.06 45.56 0.41 3.65 16 35 H 0.38 2.81 9.06 45.56 0.41 3.22 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -37.01 315.07 -6.23 -43.24 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.66 Total: 5.71 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.66 Total: -3.71 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.21 Total: -39.31 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.84 Total: -27.56 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.01 -6.23 -43.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779481573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.582 kcal (2) G-P(sol) polarization free energy of solvation -37.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds