Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47150 * 2 1 4 4 C 1.36744 * 120.00583 * 264.21006 * 3 2 1 5 5 H 1.07997 * 120.00570 * 142.45162 * 4 3 2 6 6 C 1.39098 * 119.99771 * 322.46390 * 4 3 2 7 7 N 1.31341 * 119.99982 * 337.81775 * 6 4 3 8 8 Si 1.86800 * 119.99913 * 157.82073 * 6 4 3 9 9 H 1.48496 * 109.47230 * 89.99709 * 8 6 4 10 10 H 1.48507 * 109.46981 * 209.99899 * 8 6 4 11 11 H 1.48503 * 109.47047 * 329.99560 * 8 6 4 12 12 C 1.34784 * 119.99977 * 84.21183 * 3 2 1 13 13 O 1.21776 * 120.00242 * 180.02562 * 12 3 2 14 14 C 1.41800 * 119.99697 * 359.97438 * 12 3 2 15 15 C 1.35143 * 119.99882 * 179.97438 * 14 12 3 16 16 C 1.46951 * 119.99906 * 179.97438 * 15 14 12 17 17 C 1.39984 * 120.09823 * 0.02562 * 16 15 14 18 18 C 1.37741 * 119.97400 * 179.97438 * 17 16 15 19 19 C 1.38874 * 120.17388 * 0.02562 * 18 17 16 20 20 O 1.35821 * 119.90079 * 180.02562 * 19 18 17 21 21 C 1.39445 * 120.19645 * 359.97438 * 19 18 17 22 22 O 1.35995 * 119.98426 * 180.02562 * 21 19 18 23 23 C 1.38084 * 120.02963 * 0.02562 * 21 19 18 24 24 H 1.09000 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47434 * 299.99681 * 1 2 3 26 26 H 1.08998 * 109.47395 * 59.99852 * 1 2 3 27 27 H 1.09001 * 109.47434 * 240.00319 * 2 1 3 28 28 H 1.08998 * 109.47395 * 120.00148 * 2 1 3 29 29 H 0.96995 * 120.00289 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.00279 * 0.02562 * 14 12 3 31 31 H 1.07999 * 119.99992 * 0.02562 * 15 14 12 32 32 H 1.07999 * 120.01389 * 0.24512 * 17 16 15 33 33 H 1.07998 * 119.91227 * 179.97438 * 18 17 16 34 34 H 0.96700 * 114.00651 * 89.99463 * 20 19 18 35 35 H 0.96703 * 114.00300 * 90.00013 * 22 21 19 36 36 H 1.07998 * 120.09189 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3589 1.9861 -1.1781 5 1 2.1375 3.0319 -1.3320 6 6 2.9902 1.2544 -2.1785 7 7 3.6438 0.1561 -1.8758 8 14 2.9084 1.8337 -3.9525 9 1 4.0550 2.7350 -4.2322 10 1 2.9688 0.6597 -4.8599 11 1 1.6365 2.5669 -4.1757 12 6 2.1319 2.0558 1.1613 13 8 2.5374 3.2041 1.1613 14 6 1.7783 1.4288 2.3830 15 6 1.8927 2.1050 3.5475 16 6 1.5257 1.4553 4.8135 17 6 1.0579 0.1360 4.8157 18 6 0.7151 -0.4706 6.0039 19 6 0.8317 0.2234 7.2010 20 8 0.4927 -0.3803 8.3695 21 6 1.2970 1.5380 7.2072 22 8 1.4101 2.2135 8.3821 23 6 1.6430 2.1541 6.0208 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.0844 -0.3540 -2.5733 30 1 1.4183 0.4105 2.3830 31 1 2.2531 3.1230 3.5476 32 1 0.9698 -0.4075 3.8866 33 1 0.3538 -1.4884 6.0044 34 1 1.2230 -0.8482 8.7970 35 1 2.2712 2.1152 8.8110 36 1 2.0030 3.1723 6.0244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779498038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -94.003608 kcal Electronic energy + Delta-G solvation = -20638.780093 eV Core-core repulsion = 17281.252355 eV Total energy + Delta-G solvation = -3357.527738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18863 -40.58624 -38.01750 -37.89956 -36.96215 -34.41135 -33.76670 -31.42850 -31.19181 -29.67977 -27.25036 -24.93695 -23.96728 -23.75137 -22.20342 -20.04427 -19.70363 -18.86377 -18.42857 -18.13000 -17.25464 -16.97100 -16.64073 -15.97000 -15.79404 -15.63209 -15.21849 -14.69844 -14.62772 -14.53599 -13.71714 -13.68905 -13.54214 -13.46131 -13.30237 -12.88457 -12.73351 -12.51827 -12.35705 -12.23314 -12.09120 -11.83016 -11.19106 -11.03149 -10.89291 -10.44302 -9.86635 -9.50101 -9.05266 -8.40528 -6.06325 -0.52928 0.22816 0.92266 1.40490 1.41160 1.54267 2.27832 2.44178 2.73309 3.02542 3.11307 3.18286 3.24910 3.74719 3.81607 4.10170 4.23722 4.28141 4.37620 4.49885 4.61194 4.78999 4.81415 4.83706 5.02012 5.09083 5.12131 5.26759 5.27348 5.39957 5.48589 5.53780 5.64347 5.69578 6.19578 6.54054 6.63126 6.95686 7.16224 7.42438 8.06643 8.62396 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.003543 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.978325 B = 7901.643437 C = 8351.572737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.096 3.904 3 N -0.438 5.438 4 C -0.347 4.347 5 H 0.063 0.937 6 C 0.008 3.992 7 N -0.880 5.880 8 Si 0.982 3.018 9 H -0.278 1.278 10 H -0.263 1.263 11 H -0.267 1.267 12 C 0.460 3.540 13 O -0.646 6.646 14 C -0.185 4.185 15 C -0.047 4.047 16 C -0.062 4.062 17 C -0.100 4.100 18 C -0.126 4.126 19 C 0.084 3.916 20 O -0.498 6.498 21 C 0.074 3.926 22 O -0.499 6.499 23 C -0.120 4.120 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.277 0.723 30 H 0.149 0.851 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.410 0.590 35 H 0.408 0.592 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -7.467 15.965 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.154 5.154 4 C -0.476 4.476 5 H 0.081 0.919 6 C -0.196 4.196 7 N -0.517 5.517 8 Si 0.804 3.196 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.191 1.191 12 C 0.254 3.746 13 O -0.537 6.537 14 C -0.205 4.205 15 C -0.068 4.068 16 C -0.062 4.062 17 C -0.118 4.118 18 C -0.144 4.144 19 C 0.038 3.962 20 O -0.311 6.311 21 C 0.029 3.971 22 O -0.312 6.312 23 C -0.139 4.139 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.166 0.834 31 H 0.133 0.867 32 H 0.164 0.836 33 H 0.178 0.822 34 H 0.269 0.731 35 H 0.267 0.733 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.191 -6.738 15.587 17.757 hybrid contribution 1.268 0.269 -0.784 1.514 sum -3.924 -6.469 14.803 16.625 Atomic orbital electron populations 1.22140 0.94934 1.02808 1.01429 1.21693 0.94265 0.83229 1.03497 1.43751 1.53823 1.13004 1.04844 1.19393 1.39145 0.96667 0.92371 0.91930 1.26163 0.92873 0.96426 1.04103 1.69982 1.28630 1.17724 1.35333 0.85139 0.78886 0.78374 0.77158 1.20365 1.18742 1.19107 1.17905 0.83285 0.87649 0.85727 1.90591 1.54106 1.20876 1.88092 1.22249 1.04261 1.01841 0.92124 1.22221 0.94844 0.98884 0.90896 1.18907 1.00859 0.94640 0.91843 1.21545 0.97293 0.93596 0.99335 1.21486 1.00583 1.01716 0.90612 1.19028 0.99617 0.90563 0.86986 1.84802 1.40393 1.71462 1.34428 1.18667 1.01294 0.90924 0.86203 1.84865 1.41009 1.71609 1.33718 1.21642 1.00368 1.00976 0.90873 0.89146 0.92746 0.94037 0.89794 0.91108 0.91319 0.83395 0.86672 0.83631 0.82238 0.73088 0.73310 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 10.05 71.98 0.72 -4.51 16 2 C 0.10 4.06 5.28 86.38 0.46 4.51 16 3 N -0.44 -22.94 2.52 -645.43 -1.63 -24.57 16 4 C -0.35 -20.05 8.88 84.13 0.75 -19.30 16 5 H 0.06 3.88 7.77 -2.91 -0.02 3.86 16 6 C 0.01 0.44 4.87 84.97 0.41 0.86 16 7 N -0.88 -47.04 11.60 21.69 0.25 -46.79 16 8 Si 0.98 41.94 29.61 68.60 2.03 43.97 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 C 0.46 23.92 7.36 85.12 0.63 24.55 16 13 O -0.65 -39.09 15.97 -4.59 -0.07 -39.16 16 14 C -0.18 -7.20 7.94 22.44 0.18 -7.03 16 15 C -0.05 -1.64 9.41 23.84 0.22 -1.42 16 16 C -0.06 -1.70 5.87 -20.15 -0.12 -1.81 16 17 C -0.10 -2.27 9.40 22.58 0.21 -2.06 16 18 C -0.13 -2.39 9.96 22.30 0.22 -2.17 16 19 C 0.08 1.67 6.73 22.71 0.15 1.83 16 20 O -0.50 -8.28 13.27 -77.51 -1.03 -9.31 16 21 C 0.07 1.62 6.71 22.52 0.15 1.78 16 22 O -0.50 -9.50 13.28 -79.46 -1.05 -10.55 16 23 C -0.12 -2.94 9.72 22.66 0.22 -2.72 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.05 1.74 7.48 -2.39 -0.02 1.72 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 3.92 5.63 -2.39 -0.01 3.90 16 28 H 0.07 2.63 6.43 -2.39 -0.02 2.62 16 29 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.15 4.73 3.97 -2.91 -0.01 4.72 16 31 H 0.12 4.40 7.45 -2.91 -0.02 4.38 16 32 H 0.15 2.97 6.15 -2.91 -0.02 2.95 16 33 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.41 2.37 9.06 -74.06 -0.67 1.70 16 35 H 0.41 3.35 9.06 -74.06 -0.67 2.68 16 36 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -77.26 313.48 2.51 -74.75 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.20 Total: 19.17 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.21 Total: -7.50 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.38 Total: -71.36 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -2.16 Total: -59.03 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -77.26 2.51 -74.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779498038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds